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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017530 ID=TCONS_00017530|Name=TCONS_00017530|organism=Clytia hemisphaerica|type=transcript|length=2106bp
GTGCTTCTCAACTTTGATCATAACGTCCGTGCTGGCGATAAAGAATTTGT
AAGCGAAAATCATCAAGACTGTGAACGCATACGGGTACTTGCTTGCTAAA
GTTTGCTGAGGTTTACCGTTATCCATTTCACCGTATTGTTTAGAAAGAGC
CGTAGTACGGGGGCTTTTACGTACACCAGGTTTGGAGGCGGGTGACTTTT
CAGAGTAACACGCATACATCGATTGTGACGGTTTGGACGATAATGCTTGA
GCGTCGGGTTGAGCGTCATTTGCTTGATGGATGTCACTGAAACTCTTGAT
AAGTGGCATGGTGATTTTTCGTTTTAAGAAATTTGGTAAATAGTCATTAA
TGCCACTAGCTTGGCTATTTGCTGGGGTGGACTCTAAAGGACCACCGCAG
GAGTCAATCGGCACTGAAGGGTCGCTGTGGGAGTTTTCCGACAATGAAGG
GCCACCGTAGGAGTCGATCGGTGCTAAAGGCCCACCGGAAGAATTGTTTG
ACCCCGAGGAGCCGCTGCGAGATTTGTTACGAGGTGATCTTCTAAGGGTT
GAAGGGCTGCTGTAAGTATTGTCTGACGGTGGAGGGTTGAGAGAGTTGTT
ACGGGTTGAAGGGCCGCCGTAAGAATTGTTACGGGTTGAAGGGCCGCTGT
GAGAGTTGTTACGAGTTGTAAGGCCGCCGTAAGAGTTGTTCGACACTGGA
AGGTCGTCGTAAGATTTATTCGACGCTGAAGAACCTCCGTAAGAGTTATT
ACGGGTTGAAGGTCCGTCGTAAGAATTGTTACGGGTTGAAGGTCCGCCGT
AAGAATTGTTCGACACTGGAAGGTCGTCGCAAGAGTTATTCGACGCTGAA
GAACCTCCGTAAGAGTTATTACGGGTTGAAGGTCCGTCGTAAGAATTGTT
ACGGGTTGAAGGTCCGCCGTAAGAATTGTTGCGGGTTGAAGGTCCGCCGT
AAGAATTGTTGCGGGTTGAAGGGCCACTGTGAGAGTTGTTACGAGTTGTA
AGGCCGCCGTAAGAGTTGTTCGACACTGGAGGGTCGTCGTAAGAGTTGTT
CGACACTGGAAGGTCGTCGCAAGAGTTATTCGACGCTGAAGAACCTCCGT
AAGAGTTATTACGGGTTGAAGGTCCGTCGTAAGAATTGTTACGGGTTGAA
GGTCCGCTTTGTGAGTTGTTACGACTTGTAGGACCGCCGTAAGAGTTGTT
CGACGCTGAAGAACCTCCGTAAGAGTTATTACGGGTTGAAGGTCCGCCGT
AAGAATTGTTACGGGTTGAAGGTCCGCCGTAAGAATTGTTACGGGCGGAA
GGGTCGCTGTGAGAGTTTTCTGACAATGAAGATTCACCGTAGGAGTCGAT
CGGTGCTAAAGGTCCGCTTAGTGAGCTGTTACGACTTGTAGGTCCGCCGT
AAGAATTGTTACGGGCTGAAGGGCCACTTTGAGAGTTGTTGCGACTTGTA
GAGCCGCCGTAAGAATAGTTACGGGCTGAAGGGTCGATGTGAGAGTTGTT
ACGACTTGCAGGGCCGCCGTACGAATTATTACGGGCTGAAGGGCCGCTTT
GAGAGTTGTTACGACTTGTAGAGCCACCGTAAGAATAGTTACGGGCTGAA
GGGTCGATGTGAGAGTTGTTGCGACTTGCAGGGCCTCCGTACGAATTGTT
ACGGGCTAAAGGGTCACTGTGAGAGTTGTTACGACTTGTAGGACCGCCGT
AAGAGTTGTTCGACGCTGAAGAGCTGACGATAGAGTTGTTCGACGCTGAA
GAACCGTCATACGAGTCGATCTCTTCATCTGGAACGTAGTCATTGTTTGA
GTTTTGATAGCTTCGGAATGGATTCCACAGTCCGAAGGGTGAGCGAAGTA
ATCGGTTGAAAACGCTTGCTTGAAATGAATGGACTGTTTTCCCATCTCGT
AGAATCATATGTTGGCTTTCAAAAGGTGAATAAAAACTTCCATCCCGCAA
TATCATCGGCATGCTTGCTGTTGAAGTATAGAAGACAGGTTGGTGTCTGT
ATCAGCTGGATGCAAAATTTGTGTTGCAAtgtgaataaaattaaaaaact
ttttcacgaATCAATGTTTCATGTCTGCAGATATTCAGCtttccgccatc
ttgaat Run BLAST on NCBI transcript from alignment at sc0000269:52926..55151- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017530 ID=TCONS_00017530|Name=TCONS_00017530|organism=Clytia hemisphaerica|type=transcript|length=2226bp|location=Sequence derived from alignment at sc0000269:52926..55151- (Clytia hemisphaerica)
GTGCTTCTCAACTTTGATCATAACGTCCGTGCTGGCGATAAAGAATTTGT
AAGCGAAAATCATCAAGACTGTGAACGCATACGGGTACTTGCTTGCTAAA
GTTTGCTGAGGTTTACCGTTATCCATTTCACCGTATTGTTTAGAAAGAGC
CGTAGTACGGGGGCTTTTACGTACACCAGGTTTGGAGGCGGGTGACTTTT
CAGAGTAACACGCATACATCGATTGTGACGGTTTGGACGATAATGCTTGA
GCGTCGGGTTGAGCGTCATTTGCTTGATGGATGTCACTGAAACTCTTGAT
AAGTGGCATGGTGATTTTTCGTTTTAAGAAATTTGGTAAATAGTCATTAA
TGCCACTAGCTTGGCTATTTGCTGGGGTGGACTCTAAAGGACCACCGCAG
GAGTCAATCGGCACTGAAGGGTCGCTGTGGGAGTTTTCCGACAATGAAGG
GCCACCGTAGGAGTCGATCGGTGCTAAAGGCCCACCGGAAGAATTGTTTG
ACCCCGAGGAGCCGCTGCGAGATTTGTTACGAGGTGATCTTCTAAGGGTT
GAAGGGCTGCTGTAAGTATTGTCTGACGGTGGAGGGTTGAGAGAGTTGTT
ACGGGTTGAAGGGCCGCCGTAAGAATTGTTACGGGTTGAAGGGCCGCTGT
GAGAGTTGTTACGAGTTGTAAGGCCGCCGTAAGAGTTGTTCGACACTGGA
AGGTCGTCGTAAGATTTATTCGACGCTGAAGAACCTCCGTAAGAGTTATT
ACGGGTTGAAGGTCCGTCGTAAGAATTGTTACGGGTTGAAGGTCCGCCGT
AAGAATTGTTCGACACTGGAAGGTCGTCGCAAGAGTTATTCGACGCTGAA
GAACCTCCGTAAGAGTTATTACGGGTTGAAGGTCCGTCGTAAGAATTGTT
ACGGGTTGAAGGTCCGCCGTAAGAATTGTTGCGGGTTGAAGGTCCGCCGT
AAGAATTGTTGCGGGTTGAAGGGCCACTGTGAGAGTTGTTACGAGTTGTA
AGGCCGCCGTAAGAGTTGTTCGACACTGGAGGGTCGTCGTAAGAGTTGTT
CGACACTGGAAGGTCGTCGCAAGAGTTATTCGACGCTGAAGAACCTCCGT
AAGAGTTATTACGGGTTGAAGGTCCGTCGTAAGAATTGTTACGGGTTGAA
GGTCCGCTTTGTGAGTTGTTACGACTTGTAGGACCGCCGTAAGAGTTGTT
CGACGCTGAAGAACCTCCGTAAGAGTTATTACGGGTTGAAGGTCCGTCGT
AAGAATTGTTACGGGTTGAAGGTCCGCCGTAAGAATTGTTACGGGTTGAA
GGTCCGCTTTGTGAGTTGTTACGACTTGTAGGACCGCCGTAAGAATTGTT
ACGGGCTGAAGGATCGCTGTAAGAGTTGTTACGACTTGTAGGTCCGCCGT
AAGAATTGTTACGGGCGGAAGGGTCGCTGTGAGAGTTTTCTGACAATGAA
GATTCACCGTAGGAGTCGATCGGTGCTAAAGGTCCGCTTAGTGAGCTGTT
ACGACTTGTAGGTCCGCCGTAAGAATTGTTACGGGCTGAAGGGCCACTTT
GAGAGTTGTTGCGACTTGTAGAGCCGCCGTAAGAATAGTTACGGGCTGAA
GGGTCGATGTGAGAGTTGTTACGACTTGCAGGGCCGCCGTACGAATTATT
ACGGGCTGAAGGGCCGCTTTGAGAGTTGTTACGACTTGTAGAGCCACCGT
AAGAATAGTTACGGGCTGAAGGGTCGATGTGAGAGTTGTTGCGACTTGCA
GGGCCTCCGTACGAATTGTTACGGGCTAAAGGGTCACTGTGAGAGTTGTT
ACGACTTGTAGGACCGCCGTAAGAGTTGTTCGACGCTGAAGAGCTGACGA
TAGAGTTGTTCGACGCTGAAGAACCGTCATACGAGTCGATCTCTTCATCT
GGAACGTAGTCATTGTTTGAGTTTTGATAGCTTCGGAATGGATTCCACAG
TCCGAAGGGTGAGCGAAGTAATCGGTTGAAAACGCTTGCTTGAAATGAAT
GGACTGTTTTCCCATCTCGTAGAATCATATGTTGGCTTTCAAAAGGTGAA
TAAAAACTTCCATCCCGCAATATCATCGGCATGCTTGCTGTTGAAGTATA
GAAGACAGGTTGGTGTCTGTATCAGCTGGATGCAAAATTTGTGTTGCAAT
GTGAATAAAATTAAAAAACTTTTTCACGAATCAATGTTTCATGTCTGCAG
ATATTCAGCTTTCCGCCATCTTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017530-exon-sc0000269-1575043694:53911..55151 | TCONS_00017530-exon-sc0000269-1575043694:53911..55151 | Clytia hemisphaerica | exon |
| TCONS_00017530-exon-sc0000269-1575043694:53851..53880 | TCONS_00017530-exon-sc0000269-1575043694:53851..53880 | Clytia hemisphaerica | exon |
| TCONS_00017530-exon-sc0000269-1575043694:52926..53760 | TCONS_00017530-exon-sc0000269-1575043694:52926..53760 | Clytia hemisphaerica | exon |
| TCONS_00017530-exon-sc0000269-1510915933:53911..55151 | TCONS_00017530-exon-sc0000269-1510915933:53911..55151 | Clytia hemisphaerica | exon |
| TCONS_00017530-exon-sc0000269-1510915933:53851..53880 | TCONS_00017530-exon-sc0000269-1510915933:53851..53880 | Clytia hemisphaerica | exon |
| TCONS_00017530-exon-sc0000269-1510915933:52926..53760 | TCONS_00017530-exon-sc0000269-1510915933:52926..53760 | Clytia hemisphaerica | exon |
| TCONS_00017530-exon-sc0000269-1491911889:53911..55151 | TCONS_00017530-exon-sc0000269-1491911889:53911..55151 | Clytia hemisphaerica | exon |
| TCONS_00017530-exon-sc0000269-1491911889:53851..53880 | TCONS_00017530-exon-sc0000269-1491911889:53851..53880 | Clytia hemisphaerica | exon |
| TCONS_00017530-exon-sc0000269-1491911889:52926..53760 | TCONS_00017530-exon-sc0000269-1491911889:52926..53760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000269 | supercontig | sc0000269:52926..55151 - |
Blast
The following BLAST results are available for this feature:
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