|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017490 ID=TCONS_00017490|Name=TCONS_00017490|organism=Clytia hemisphaerica|type=transcript|length=4369bp
TcacaatcttaaaaatctttatttcaaattaaagTGCGTTAAAATAATTC
TATAAAACCCTattaagaaaaacttaaaaattttctatttttaaacgATT
CTATGAGTGCATGTCTATAGCTATAGGTTTCTGTCACAATTAAGTCAATA
AAATCATttctaaaaatcataaaatctatAATCCTTAAGACTGCTTAAGA
CTAAATTATTATACTATAAAATTAACCTATCAGACCAGCCCTACAGTATA
GTTGATAATAGAtcactatttaaaaaaaagaaagagaaaaatatatgTCT
TTTCAATGAAGAAATATAGCTTATGTCGAAGTAGTGAAATTATTATCGGG
GACAAAAGAACGGAGGAATACTTCGAACTTTCCACAATTTTACCAATTGG
TTGAGAACATTGTATAAAGTGTATGTTATCAAGACCGTAAAAGTAAAgta
taaaatttgtaaaaaatatgaaattattttgttgCATTGTATTATAAGTA
TAAATAGTGAATGTAAGTattaaaaaaggtcaaaaagaaataaagttCAC
ACCATAGCTACAAAAGCTGATCCAAGCATATCCTGAACTATTTCCCTCTT
TAGATAATGtgatttttttctaagaaaatagaCTGGATTAGACACTCTAA
AATACAGATAAGTAACACTctataaaacaaagaaatagaAACACAAGTta
gtgaaagttttaaaaaacgaagaaaaaaatctgaaaatcagcCAGTCAAA
AAGGGGAAACTTTTATCTACTGAGAAATACTTTCAGCCATCTGATCCttg
tattttgataattttacgTCGGATTTTGCCTAACAGCATAACCATCGCAA
TCAATCCAACGATACAAAAACATAACATACTAGCTGAGAACTGCAAACGA
TGCTCAAAAGCTGCTGCAGCTATGATGGGTCCTAGAATCAATGAAACACG
ACTGATTGATGAATATACAGCTTGAGTGAATCCTTGAGTCTCTCTCGGTG
TCAGTTTTGTGGTCAAGGATTTGCCAGCCACAAGGTTAAGCGGGATGGCC
GAAAAAACAAATACACATATAATAACAAATACTGCCACTCGAGCATGTTT
GGGTACAACAACTTCAACCATCAGTAGCAGAAGAGCCAGACTGGTCAAAA
TTAAGGAGATTATGATATAATGCTGGTCTTTGATTTTGGACTTTCCTGAA
AATTTATACATTAGGAAAAAGACAAACATTAGCCAAACACCACCAACCAT
ATAAACACCACTTGTTTCGGTTTCTTTCCAACCATAACCTTCTTGTGTAA
TCAAGGGCAAGAAAACTTCAAATTCAGTTTGAATTAAAGACAAAATCAAA
TCAGAATAAAATATAGCAACAATTTCGATTGTGGTGATCAGCTCTAGAGC
TTGTTGGAATGCGCTTTTCTTTTGAACAAGTTTGATTGAATCGCCATAGT
CAGTTGTTGTCATTTGCGATTCATCGTCATTGTAAAATTCTTCATCATCC
TCAGTTACAATATTATCATCAATGAAGGTTCGACCATTTGCTGCTTTATA
ACATTTGAAATGTTTACGATACTCCTTTGGTACTAATGGTTTCTCGTCAC
CATAGGTCACATCTAGTACAGATTCACATAATGAAGTTTCTCTGACCCTC
TTGAAATCAATTTCATACTCTGTGGGAGGAACATTTCCTCTTCTATCTAA
CTGCATGTTAGGGTGATACTTTGCACGTTCTTCAATTAATAATGAGAGGT
TTGAGATGTAGAACACACTTATTAGTTGAGCTAGTAACCATAAAATAGCC
ATGAATAAACCAGGTGCTGTTCCATTGTCTATGGTCCATTTTCCCATAGT
GAAATCAACCTTTACTAAAAAGAAGTTCAGAGCTGGNaaaaattttctat
ttttaaacgATTCTATGAGTGCATGTCTATAGCTATAGGTTTCTGTCACA
ATTAAGTCAATAAAATCATttctaaaaatcataaaatctatAATCCTTAA
GACTGCTTAAGACTAAATTATTATACTATAAAATTAACCTATCAGACCAG
CCCTACAGTATAGTTGATAATAGAtcactatttaaaaaaaagaaagagaa
aaatatatgTCTTTTCAATGAAGAAATATAGCTTATGTCGAAGTAGTGAA
ATTATTATCGGGGACAAAAGAACGGAGGAATACTTCGAACTTTCCACAAT
TTTACCAATTGGTTGAGAACATTGTATAAAGTGTATGTTATCAAGACCGT
AAAAGTAAAgtataaaatttgtaaaaaatatgaaattattttgttgCATT
GTATTATAAGTATAAATAGTGAATGTAAGTattaaaaaaggtcaaaaaga
aataaagttCAAACCATAGCTACAAAAGCTGATCCAAGCATATGAAGAAT
ATCCTGAACTATTTCCCTCTTTAGATTATGtgatttttttctaagaaaat
agaCTGGATTAGACACTCTAAAATACAGATAAGTAACACTctataaaaca
aagaaatagaAACACAAGTtagtgaaagttttaaaaaacgaagaaaaaaa
tctgaaaattagcCAGTCAAAAAGGGGAAACTTTTATCTACTGAGAAATA
CTTTCAGCCGTCTCAACCttgtattttgataattttacgTCGGATTTTGC
CTAACAACATAACCATCGCAATCAATCCAACGATACAAAAACATAACATA
CTAGCTGAGAACTGCAAACGATGCTCAAAAGCTGCTGCAGCTATGATGGG
TCCTAGAATCAATGAAACACGACTGATTGATGAATATACAGCTTGAGTGA
ATCCTTGAGTCTCTCTCGGTGTCAGTTTTGTGGTCAAGGATTTGCCAGCC
ACAAGGTTAAGCGGGATGGCCGAAAAAACAAATACACATATAATAACAAA
TACTGCCACTCGAGCATGTTTGGGTACAACAACTTCAACCATCAGTAGCA
GAAGAGCCAGACTGGTCAAAATTAAGGAGATTATGATATAATGCTGGTCT
TTGATTTTGGACTTTCCTGAAAATTTATACATTAGGAAAAAGACAAACAT
TAGCCAAACACCACCAACCATATAAACACCACTTGTTTCGGTTTCTTTCC
AACCATAACCTTCTTGTGTAATCAAGGGCAAGAAAACTTCAAATTCAGTT
TGAATTAAAGACAAAATCAAATCAGAATAAAATATAGCAACAATTTCGAT
TGTGGTGATCAGCTCTAGAGCTTGTTGGAATGCGCTTTTCTTTTGAACAA
GTTTGATTGAATCGCCATAGTCAGTTGTTGTCATTTGCGATTCATCGTCA
TTGTAAAATTCTTCATCATCCTCAGTTACAATATTATCATCAATGAAGGT
TCGACCATTTGCTGCTTTATAACATTTGAAATGTTTACGATACTCCTTTG
GTACTAATGGTTTCTCGTCACCATAGGTCACATCTAGTACAGATTCACAT
AATGAAGTTTCTCTGACCCTCTTGAAATCAATTTCATACTCTGTGGGAGG
AACATTTCCTCTTCTGTCTAACTGCATGTTAGGGTGATACTTTGCACGTT
CTTCAATTAATAATGAGAGGTTTGAGATGTAGAACACACTTATTAGTTGA
GCTAGTAACCATAAAATAGCCATGAATAAACCAGGTGCTGTTCCATTGTC
TATGGTCCATTTTCCCATAGTGAAATCAACCTTTACTAAAAAGAAGTTCA
GAGCTGGCCCAAAAGTAAGACCTAAAACTCTACCCAGTTCCAGCAGAGCC
AGCGCCCCTGTGCGACTTGATAAAGGATATGTATGAACAATTTCTGAAGT
TGCACAAGCATAAAATCCATCGCCAAGTCCAGCAAAGAAACGACCAGCAA
AGATGAgccattttgaaaatggtaaggCATAGATGATATTACCTACTATT
TCAAAGGTATTCAAAACGATGATTAATTCTTTTGAGCGTTttgttttgtc
aaaaattcgaCCAACAACAGGTAAAGACAACACAGCTGAAGTAGGGTATA
TTGCAACCACAATACCCAAAAACCATGTTTTGACGTCAGGGTATCTCTTC
AAATAAAGCCAAATTGAAGGTAATATGATCGCATATTCAGCTCCCAATAA
GAACATACGAATGAAGAAACATATCAGTGTTGCTTTTCGTTTCCGCAAAA
AAACTGGATCTTTTTCCAGGCCTTCAAAACGGTCATCAAAGTTTATTGGG
TTTTTATCtggcatttttttgcatttttattcATTACACTATTACAAACA
TGatcatttttataagcaagttaTTTCTGTTAATAATACAGGTCAAATCA
GGATCTAGATACTAAAACTTGGGGTATATTAGTAATCTgagaattttcat
ctttagtagTAGAAGGCCA Run BLAST on NCBI transcript from alignment at sc0000269:115084..119452+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017490 ID=TCONS_00017490|Name=TCONS_00017490|organism=Clytia hemisphaerica|type=transcript|length=4369bp|location=Sequence derived from alignment at sc0000269:115084..119452+ (Clytia hemisphaerica)
TcacaatcttaaaaatctttatttcaaattaaagTGCGTTAAAATAATTC
TATAAAACCCTattaagaaaaacttaaaaattttctatttttaaacgATT
CTATGAGTGCATGTCTATAGCTATAGGTTTCTGTCACAATTAAGTCAATA
AAATCATttctaaaaatcataaaatctatAATCCTTAAGACTGCTTAAGA
CTAAATTATTATACTATAAAATTAACCTATCAGACCAGCCCTACAGTATA
GTTGATAATAGAtcactatttaaaaaaaagaaagagaaaaatatatgTCT
TTTCAATGAAGAAATATAGCTTATGTCGAAGTAGTGAAATTATTATCGGG
GACAAAAGAACGGAGGAATACTTCGAACTTTCCACAATTTTACCAATTGG
TTGAGAACATTGTATAAAGTGTATGTTATCAAGACCGTAAAAGTAAAgta
taaaatttgtaaaaaatatgaaattattttgttgCATTGTATTATAAGTA
TAAATAGTGAATGTAAGTattaaaaaaggtcaaaaagaaataaagttCAC
ACCATAGCTACAAAAGCTGATCCAAGCATATCCTGAACTATTTCCCTCTT
TAGATAATGtgatttttttctaagaaaatagaCTGGATTAGACACTCTAA
AATACAGATAAGTAACACTctataaaacaaagaaatagaAACACAAGTta
gtgaaagttttaaaaaacgaagaaaaaaatctgaaaatcagcCAGTCAAA
AAGGGGAAACTTTTATCTACTGAGAAATACTTTCAGCCATCTGATCCttg
tattttgataattttacgTCGGATTTTGCCTAACAGCATAACCATCGCAA
TCAATCCAACGATACAAAAACATAACATACTAGCTGAGAACTGCAAACGA
TGCTCAAAAGCTGCTGCAGCTATGATGGGTCCTAGAATCAATGAAACACG
ACTGATTGATGAATATACAGCTTGAGTGAATCCTTGAGTCTCTCTCGGTG
TCAGTTTTGTGGTCAAGGATTTGCCAGCCACAAGGTTAAGCGGGATGGCC
GAAAAAACAAATACACATATAATAACAAATACTGCCACTCGAGCATGTTT
GGGTACAACAACTTCAACCATCAGTAGCAGAAGAGCCAGACTGGTCAAAA
TTAAGGAGATTATGATATAATGCTGGTCTTTGATTTTGGACTTTCCTGAA
AATTTATACATTAGGAAAAAGACAAACATTAGCCAAACACCACCAACCAT
ATAAACACCACTTGTTTCGGTTTCTTTCCAACCATAACCTTCTTGTGTAA
TCAAGGGCAAGAAAACTTCAAATTCAGTTTGAATTAAAGACAAAATCAAA
TCAGAATAAAATATAGCAACAATTTCGATTGTGGTGATCAGCTCTAGAGC
TTGTTGGAATGCGCTTTTCTTTTGAACAAGTTTGATTGAATCGCCATAGT
CAGTTGTTGTCATTTGCGATTCATCGTCATTGTAAAATTCTTCATCATCC
TCAGTTACAATATTATCATCAATGAAGGTTCGACCATTTGCTGCTTTATA
ACATTTGAAATGTTTACGATACTCCTTTGGTACTAATGGTTTCTCGTCAC
CATAGGTCACATCTAGTACAGATTCACATAATGAAGTTTCTCTGACCCTC
TTGAAATCAATTTCATACTCTGTGGGAGGAACATTTCCTCTTCTATCTAA
CTGCATGTTAGGGTGATACTTTGCACGTTCTTCAATTAATAATGAGAGGT
TTGAGATGTAGAACACACTTATTAGTTGAGCTAGTAACCATAAAATAGCC
ATGAATAAACCAGGTGCTGTTCCATTGTCTATGGTCCATTTTCCCATAGT
GAAATCAACCTTTACTAAAAAGAAGTTCAGAGCTGGNaaaaattttctat
ttttaaacgATTCTATGAGTGCATGTCTATAGCTATAGGTTTCTGTCACA
ATTAAGTCAATAAAATCATttctaaaaatcataaaatctatAATCCTTAA
GACTGCTTAAGACTAAATTATTATACTATAAAATTAACCTATCAGACCAG
CCCTACAGTATAGTTGATAATAGAtcactatttaaaaaaaagaaagagaa
aaatatatgTCTTTTCAATGAAGAAATATAGCTTATGTCGAAGTAGTGAA
ATTATTATCGGGGACAAAAGAACGGAGGAATACTTCGAACTTTCCACAAT
TTTACCAATTGGTTGAGAACATTGTATAAAGTGTATGTTATCAAGACCGT
AAAAGTAAAgtataaaatttgtaaaaaatatgaaattattttgttgCATT
GTATTATAAGTATAAATAGTGAATGTAAGTattaaaaaaggtcaaaaaga
aataaagttCAAACCATAGCTACAAAAGCTGATCCAAGCATATGAAGAAT
ATCCTGAACTATTTCCCTCTTTAGATTATGtgatttttttctaagaaaat
agaCTGGATTAGACACTCTAAAATACAGATAAGTAACACTctataaaaca
aagaaatagaAACACAAGTtagtgaaagttttaaaaaacgaagaaaaaaa
tctgaaaattagcCAGTCAAAAAGGGGAAACTTTTATCTACTGAGAAATA
CTTTCAGCCGTCTCAACCttgtattttgataattttacgTCGGATTTTGC
CTAACAACATAACCATCGCAATCAATCCAACGATACAAAAACATAACATA
CTAGCTGAGAACTGCAAACGATGCTCAAAAGCTGCTGCAGCTATGATGGG
TCCTAGAATCAATGAAACACGACTGATTGATGAATATACAGCTTGAGTGA
ATCCTTGAGTCTCTCTCGGTGTCAGTTTTGTGGTCAAGGATTTGCCAGCC
ACAAGGTTAAGCGGGATGGCCGAAAAAACAAATACACATATAATAACAAA
TACTGCCACTCGAGCATGTTTGGGTACAACAACTTCAACCATCAGTAGCA
GAAGAGCCAGACTGGTCAAAATTAAGGAGATTATGATATAATGCTGGTCT
TTGATTTTGGACTTTCCTGAAAATTTATACATTAGGAAAAAGACAAACAT
TAGCCAAACACCACCAACCATATAAACACCACTTGTTTCGGTTTCTTTCC
AACCATAACCTTCTTGTGTAATCAAGGGCAAGAAAACTTCAAATTCAGTT
TGAATTAAAGACAAAATCAAATCAGAATAAAATATAGCAACAATTTCGAT
TGTGGTGATCAGCTCTAGAGCTTGTTGGAATGCGCTTTTCTTTTGAACAA
GTTTGATTGAATCGCCATAGTCAGTTGTTGTCATTTGCGATTCATCGTCA
TTGTAAAATTCTTCATCATCCTCAGTTACAATATTATCATCAATGAAGGT
TCGACCATTTGCTGCTTTATAACATTTGAAATGTTTACGATACTCCTTTG
GTACTAATGGTTTCTCGTCACCATAGGTCACATCTAGTACAGATTCACAT
AATGAAGTTTCTCTGACCCTCTTGAAATCAATTTCATACTCTGTGGGAGG
AACATTTCCTCTTCTGTCTAACTGCATGTTAGGGTGATACTTTGCACGTT
CTTCAATTAATAATGAGAGGTTTGAGATGTAGAACACACTTATTAGTTGA
GCTAGTAACCATAAAATAGCCATGAATAAACCAGGTGCTGTTCCATTGTC
TATGGTCCATTTTCCCATAGTGAAATCAACCTTTACTAAAAAGAAGTTCA
GAGCTGGCCCAAAAGTAAGACCTAAAACTCTACCCAGTTCCAGCAGAGCC
AGCGCCCCTGTGCGACTTGATAAAGGATATGTATGAACAATTTCTGAAGT
TGCACAAGCATAAAATCCATCGCCAAGTCCAGCAAAGAAACGACCAGCAA
AGATGAgccattttgaaaatggtaaggCATAGATGATATTACCTACTATT
TCAAAGGTATTCAAAACGATGATTAATTCTTTTGAGCGTTttgttttgtc
aaaaattcgaCCAACAACAGGTAAAGACAACACAGCTGAAGTAGGGTATA
TTGCAACCACAATACCCAAAAACCATGTTTTGACGTCAGGGTATCTCTTC
AAATAAAGCCAAATTGAAGGTAATATGATCGCATATTCAGCTCCCAATAA
GAACATACGAATGAAGAAACATATCAGTGTTGCTTTTCGTTTCCGCAAAA
AAACTGGATCTTTTTCCAGGCCTTCAAAACGGTCATCAAAGTTTATTGGG
TTTTTATCtggcatttttttgcatttttattcATTACACTATTACAAACA
TGatcatttttataagcaagttaTTTCTGTTAATAATACAGGTCAAATCA
GGATCTAGATACTAAAACTTGGGGTATATTAGTAATCTgagaattttcat
ctttagtagTAGAAGGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017490-exon-sc0000269-1491911889:115084..119452 | TCONS_00017490-exon-sc0000269-1491911889:115084..119452 | Clytia hemisphaerica | exon |
| TCONS_00017490-exon-sc0000269-1510915933:115084..119452 | TCONS_00017490-exon-sc0000269-1510915933:115084..119452 | Clytia hemisphaerica | exon |
| TCONS_00017490-exon-sc0000269-1575043694:115084..119452 | TCONS_00017490-exon-sc0000269-1575043694:115084..119452 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000269 | supercontig | sc0000269:115084..119452 + |
Blast
The following BLAST results are available for this feature:
|
