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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017462 ID=TCONS_00017462|Name=TCONS_00017462|organism=Clytia hemisphaerica|type=transcript|length=2455bpRun BLAST on NCBI transcript from alignment at sc0000267:315787..334890- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017462 ID=TCONS_00017462|Name=TCONS_00017462|organism=Clytia hemisphaerica|type=transcript|length=19104bp|location=Sequence derived from alignment at sc0000267:315787..334890- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017462 vs. Swiss-Prot (Human)
Match: DYH1 (Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4) HSP 1 Score: 1225.69 bits (3170), Expect = 0.000e+0 Identity = 624/818 (76.28%), Postives = 717/818 (87.65%), Query Frame = 3
Query: 3 YKETGTYIVKIMDEITQLLDDHIVMTQSMSFSPYKKAFEERIASWEEKLVMTQDVLDEWITCQRSWLYLEPIFSSEDINRQLPVESKRYQTMERIWRKIMASAFANPHVIDFCADQKLLENLRECNKLLEQVQKGLSEYLETKRTSFPRFYFLSDDELLEILSQTKDPTAVQPHLRKCFENIAKLTFEKDLRISEMHSGEGEIVPFSEQLYPTGNVEDWLCEVERVMKGSLREILDQALQAYAEAERTEWVLQWPGQIVIAGCQTYWTTEVSEALEDSNIVDAL-THFRNQLSELVALVRGNLSRIARLVLGALIVIEVHACDXXXXXXXXXXXXXXDFEWISQLRYYWEDEDLYIRAVNAQFKYGYEYLGNNGRLVITPLTDRCYLTLTGALHLXXXXXXXXXXXXXXXXXXXDLAKAMAIQCVVFNCSDQLDYMAMGKFFKGLATSGAWACFDEFNRIDIEVLSXXXXXXXXXXXXXXXXXERFMFEGVELLLRPTCAPFITMNPGYAGRTELPDNLKALFRPVAMMVPNYTMIAEISLFSFGFNQAKVLAKKITSTFKLSSEQLSSQDHYDFGMRAVKTVISAAGNLKRENPDMDEELICLRAIRDVNVPKFLQDDLKLFNGIVSDLFPKIKEQPIDYGALDESIRKSCLSVNIEDVDGFVTKCIQLFETTVVRHGLMLVGPTGSGKTKCYETLQRASTALKGTISPAGSTFQEVKTFVLNPKSITMGQLYGEFDLMTHEWTDGILSSLVRLGASSTTPDNKWYIFDGPVDAVWIENMNTVLDDNKKLCLTSGEIIKLSDTQTMMFEVADLAVAS 2453
YK T TYI+K DE +QLLDDHIVMTQ+MSFSPYKK FE+RI SWE KL +TQ+VL+EW+ CQRSWLYLEPIFSSEDIN+QLPVESKRYQTMERIW+KIM +A+ N VI+ C+D ++L++LR+CNK+L+ VQKGLSEYLETKR++FPRFYFLSDDELLEILSQTKDPTAVQPHLRKCFENIA+L F++DL I+ M+S EGE V +YP+ NVEDWL EVER MK S+ +I+++A++AY RT+WVL WPGQ+ IAGCQTYWT EV+EALE N+ L QLS+LVALVRG LSR+ R VL ALIVIEVHA DVV K+++ENV +VNDF+WISQLRYYW + DLYIRAVNA+F YGYEYLGN+GRLVITPLTDRCYLTLTGALHL FGGAPAGPAGTGKTETTKDL KA+AIQ VVFNCSDQLD+MAMGKFFKGLA++GAWACFDEFNRIDIEVLSVVAQQI TIQ+AQ+Q+VERFMFEGVE+ L P+CA FITMNPGYAGRTELPDNLKALFRPVAMMVP+Y MI EISL+SFGFN+A VLAKKIT+TFKLSSEQLSSQDHYDFGMRAVKTVISAAGNLKRENP M+EELICLRAIRDVNVPKFLQ+DLKLF+GIVSDLFP IKE+ DYG LDE+IR++C + N++DV+GF+TKCIQL+ETTVVRHGLMLVGPTGSGK+ CY L A T+LKG S +G ++ V +VLNPKSITMGQLYGEFDL+THEWTDGI SS +R GA ++ + KWY+FDGPVDA+WIENMNTVLDDNKKLCL+SGEIIKL++ TMMFEV DLAVAS
Sbjct: 1179 YKATDTYILKSPDEASQLLDDHIVMTQNMSFSPYKKPFEQRINSWENKLKLTQEVLEEWLNCQRSWLYLEPIFSSEDINQQLPVESKRYQTMERIWKKIMKNAYENREVINVCSDLRMLDSLRDCNKILDLVQKGLSEYLETKRSAFPRFYFLSDDELLEILSQTKDPTAVQPHLRKCFENIARLLFQEDLEITHMYSAEGEEVQLCFSIYPSSNVEDWLREVERSMKASVHDIIEKAIRAYPTMPRTQWVLNWPGQVTIAGCQTYWTMEVAEALEAGNLRSQLFPQLCQQLSDLVALVRGKLSRMQRAVLSALIVIEVHAKDVVSKLIQENVVSVNDFQWISQLRYYWTNNDLYIRAVNAEFIYGYEYLGNSGRLVITPLTDRCYLTLTGALHLKFGGAPAGPAGTGKTETTKDLGKALAIQTVVFNCSDQLDFMAMGKFFKGLASAGAWACFDEFNRIDIEVLSVVAQQITTIQKAQQQRVERFMFEGVEIPLVPSCAVFITMNPGYAGRTELPDNLKALFRPVAMMVPDYAMITEISLYSFGFNEASVLAKKITTTFKLSSEQLSSQDHYDFGMRAVKTVISAAGNLKRENPSMNEELICLRAIRDVNVPKFLQEDLKLFSGIVSDLFPTIKEEDTDYGILDEAIREACRNSNLKDVEGFLTKCIQLYETTVVRHGLMLVGPTGSGKSTCYRVLAAAMTSLKGQPSISGGMYEAVNYYVLNPKSITMGQLYGEFDLLTHEWTDGIFSSFIRAGAITSDTNKKWYMFDGPVDAIWIENMNTVLDDNKKLCLSSGEIIKLTEAMTMMFEVQDLAVAS 1996 The following BLAST results are available for this feature:
BLAST of TCONS_00017462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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