|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017446 ID=TCONS_00017446|Name=TCONS_00017446|organism=Clytia hemisphaerica|type=transcript|length=4969bpRun BLAST on NCBI protein sequence of TCONS_00017446-protein >TCONS_00017446-protein ID=TCONS_00017446-protein|Name=TCONS_00017446-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1422bp EVTKLQEDLETMQPLLAQAAIETEETMEKIQKDTIVANETKEVVQKEEQGRun BLAST on NCBI transcript from alignment at sc0000267:232124..275528- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017446 ID=TCONS_00017446|Name=TCONS_00017446|organism=Clytia hemisphaerica|type=transcript|length=43405bp|location=Sequence derived from alignment at sc0000267:232124..275528- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000267:232124..275528- >TCONS_00017446 ID=TCONS_00017446|Name=TCONS_00017446|organism=Clytia hemisphaerica|type=CDS|length=102456bp|location=Sequence derived from alignment at sc0000267:232124..275528- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017446 vs. Swiss-Prot (Human)
Match: DYH1 (Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4) HSP 1 Score: 1696.02 bits (4391), Expect = 0.000e+0 Identity = 803/1146 (70.07%), Postives = 961/1146 (83.86%), Query Frame = 1
Query: 829 KLIGGLGDEKGRWEESIVTFDSQIESIVGDVFISSGVIAYLGVFTGEYRLDLVQEWMKELKGYNIAHSENCTLVGTLGDPVKIRNWQIYGLPRDGLSVDNGVIVEYSRRWPLFIDPQGQANKWIKSLEREAGIDVIKLTDRDFLRSLENAIRFGKPCLLENIGEELDPALEPVLLKLTYKQSGSTVIKLGDAIIPYHEDFKFYITTKLPNPCYTPETSTKVTLVNFTLSPSGLEDQMLALVVAEERPDLEEAKNQLIISNAKMKQELKEIEDKILHKLSASEGSPVDDIDLIKTLEQSKVKSQEIKSKVIVAEQTEKDIDATRSQYIPVAVRTQILFFCTYDLAMIDPMYQYSLDWFINIFLNGILNAEQADNITRRIENINDFFTYSLYTNVCRSLFEKHKLLFSFLLSVRILMNENKINMDEWRFLLAGGSTVPRDLPNPASDWLSDRAWREVVMLSNLPKFEAFADDFKNNLEGFKRIFDSVEPHREPQPGQWAECLDNFQKLLVLRCIRADKVTNAMQDFVAGHLGQRFIEPQTADLGQVFKDSSPTTPLIFVLSPGTDPASALYKFAEEMRFSKKLNAISLGQGQGPRAEALMYSAMERGKWVFFQNCHLAPSWMPTLERLIENIDTDKVHRDFRMWATSMPSPKFPVSILQNSSKMTVEPPKGIKANLLKMYIGWNDDFLNSCGRTNEFRSLLFSLCLFHGVAIERRKYGPLGFNIPYEFTEGDSQICISQLSMFLDEYPDIPYKVLKYTAGHINYGGRVTDDWDRRCIMTILEDFYAPKVLDDGHTFSVSGIYKQIVQGSEHEAYMDYIRHLPINDTPEIFGLHDNANITFAQNETFSLLNGILKLQPKXXXXXXXXXXXIMEETARSILSKVPDPISLADVLQKYPVMYEESMNTVLAQEVTRYNKXXXXXXXXXXXXXKALKGLVVMSEQLEMMSNSLFNNQVPDMWAGKAYPSLKPLASWVLDLIERVKFINGWIDNGIPPVFWISGFFFPQGFLTGTLQNYARANAMAIDTISFDYEVMKEPAKKLTSRPTSGCYISGLYLEGARWGYSIHELAESKPKELYTEMPVIWLKPAQNRVKPNDGIYECPVYKTLTRAGTLSTTGHSTNFVLSVELPTSKNQPYWIKQGVALMCALDF 4266
+LI GL DEK RW+E++ + +I GDV +++G +AYLG FTG+YR L W+K+L+ +N+ H+ TL+GTLG+PVKIR+WQI GLP D LSV+NGVI ++S+RW FIDPQ QANKWIK++E++ G+DV KL+DRDFLRS+ENAIRFGKPCLLEN+GEELDPALEPVLLK TYKQ G+TV+KLGD +IPYHEDF+ YITTKLPNP YTPE STK+TL+NFTLSPSGLEDQ+L VVAEERPDLEEAKNQLIISNAKM+QELK+IED+IL++LS+SEG+PVDD++LIK LE SK+K+ EI++KV +AEQTEKDID TR +YIPVA+RTQILFFC DLA +DPMYQYSL+WF+NIFL+GI N+E+ADN+ +RI NIN + TYSLY+NVCRSLFEKHKL+F+FLL VRI+MNE KIN EWR+LL+GGS + NPA DWLSDRAWR+++ LSNLP F +F+ DF +L F+ IFDS+EPHREP PG W + LD FQKLLVLRC+R DKVTNAMQDFVA +L RFIEPQTA+L VFKDS+ TTPLIFVLSPGTDPA+ LYKFAEEM+FSKKL+AISLGQGQGPRAEA+M S++ERGKWVFFQNCHLAPSWMP LERLIE+I+ DKVHRDFR+W TS+PS KFPVSILQN SKMT+EPP+G++ANLLK Y +DFLNSC + EF+SLL SLCLFHG A+ER K+GPLGFNIPYEFT+GD +ICISQL MFLDEY DIPYKVLKYTAG INYGGRVTDDWDRRCIM ILEDFY P VL H++S SGIY QI + Y+ YI+ LP+ND PEIFGLHDNANITFAQNETF+LL I++LQPKSSS + REEI+E+ ++IL KVP+PI+L V+ KYPV+YEESMNTVL QEV RYN+LL + TLQDLLKALKGLVVMS QLE+M+ SL+NN VP++W+ KAYPSLKPL+SWV+DL++R+ F+ WI +GIP VFWISGFFFPQ FLTGTLQN+AR ++IDTISFD++VM E +LT RP GCYI GL+LEGARW +LAES+PKELYTEM VIWL P NR + Y CP+YKTLTRAGTLSTTGHSTN+V++VE+PT + Q +WIK+GVAL+CALD+
Sbjct: 3186 QLINGLSDEKVRWQETVENLQYMLNNISGDVLVAAGFVAYLGPFTGQYRTVLYDSWVKQLRSHNVPHTSEPTLIGTLGNPVKIRSWQIAGLPNDTLSVENGVINQFSQRWTHFIDPQSQANKWIKNMEKDNGLDVFKLSDRDFLRSMENAIRFGKPCLLENVGEELDPALEPVLLKQTYKQQGNTVLKLGDTVIPYHEDFRMYITTKLPNPHYTPEISTKLTLINFTLSPSGLEDQLLGQVVAEERPDLEEAKNQLIISNAKMRQELKDIEDQILYRLSSSEGNPVDDMELIKVLEASKMKAAEIQAKVRIAEQTEKDIDLTRMEYIPVAIRTQILFFCVSDLANVDPMYQYSLEWFLNIFLSGIANSERADNLKKRISNINRYLTYSLYSNVCRSLFEKHKLMFAFLLCVRIMMNEGKINQSEWRYLLSGGS-ISIMTENPAPDWLSDRAWRDILALSNLPTFSSFSSDFVKHLSEFRVIFDSLEPHREPLPGIWDQYLDQFQKLLVLRCLRGDKVTNAMQDFVATNLEPRFIEPQTANLSVVFKDSNSTTPLIFVLSPGTDPAADLYKFAEEMKFSKKLSAISLGQGQGPRAEAMMRSSIERGKWVFFQNCHLAPSWMPALERLIEHINPDKVHRDFRLWLTSLPSNKFPVSILQNGSKMTIEPPRGVRANLLKSYSSLGEDFLNSCHKVMEFKSLLLSLCLFHGNALERHKFGPLGFNIPYEFTDGDLRICISQLKMFLDEYDDIPYKVLKYTAGEINYGGRVTDDWDRRCIMNILEDFYNPDVLSPEHSYSASGIYHQIPPTYDLHGYLSYIKSLPLNDMPEIFGLHDNANITFAQNETFALLGTIIQLQPKSSSAGSQGREEIVEDVTQNILLKVPEPINLQWVMAKYPVLYEESMNTVLVQEVIRYNRLLQVITQTLQDLLKALKGLVVMSSQLELMAASLYNNTVPELWSAKAYPSLKPLSSWVMDLLQRLDFLQAWIQDGIPAVFWISGFFFPQAFLTGTLQNFARKFVISIDTISFDFKVMFEAPSELTQRPQVGCYIHGLFLEGARWDPEAFQLAESQPKELYTEMAVIWLLPTPNRKAQDQDFYLCPIYKTLTRAGTLSTTGHSTNYVIAVEIPTHQPQRHWIKRGVALICALDY 4330 HSP 2 Score: 364.385 bits (934), Expect = 8.896e-102 Identity = 191/278 (68.71%), Postives = 233/278 (83.81%), Query Frame = 1
Query: 1 EVTKLQEDLETMQPLLAQAAIETEETMEKIQKDTIVANETKEVVQKEEQGAIKKAQETQAIADDAQRDLNEAIPXXXXXXXXXXXXNRNDVVEVRALQRPPPGVKMVIESVCIMKGVKPKKVAGEKVGTKVDDYLEPGRTLLQDPGKFLDMLFQYDKENIPESVITRIQPYIDNEDFQPAAIAKVSKACTSICQWVRAMHKYHFVAKGVAPKRERLKLAQEELMETQRLLDKAKGKLAEVEEGIASLQAKYDECISKKEDLEFKTNQCTARLERAEKL 834
+V K+QEDLE+M PLL +AA +T TME+I+ DT +A ET+ VQ EE A +KA++ QAIADDAQ+DL+EA+PAL+AALASL++LN+NDV EVRA+QRPPPGVK+VIE+VCIMKG+KPKKV GEK GTKVDDY EPG+ LLQDPG FL+ LF++DK+NI + VI IQPYIDNE+FQPA IAKVSKACTSICQWVRAMHKYHFVAK V PKR+ L AQ++L TQR+LD+AK +L EVE+GIA++QAKY ECI+KKE+LE K QC RL RA K+
Sbjct: 2845 DVAKMQEDLESMHPLLEEAAKDTMLTMEQIKVDTAIAEETRNSVQTEEIKANEKAKKAQAIADDAQKDLDEALPALDAALASLRNLNKNDVTEVRAMQRPPPGVKLVIEAVCIMKGIKPKKVPGEKPGTKVDDYWEPGKGLLQDPGHFLESLFKFDKDNIGDVVIKAIQPYIDNEEFQPATIAKVSKACTSICQWVRAMHKYHFVAKAVEPKRQALLEAQDDLGVTQRILDEAKQRLREVEDGIATMQAKYRECITKKEELELKCEQCEQRLGRAGKV 3122 The following BLAST results are available for this feature:
BLAST of TCONS_00017446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.