TCONS_00017436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017436
Unique NameTCONS_00017436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1969

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017436 ID=TCONS_00017436|Name=TCONS_00017436|organism=Clytia hemisphaerica|type=transcript|length=1969bp
CCAATAAAATATATGGCACAAGAAAGACGTGTCTATCAAATTGCGTAAAT
GTACGGCATTCGGAATGAATCAAGGACGTatatatgtacggcattcgggt
tcaaaaggttaagaacaatAGATTAATAATGATCATCCCCAGATTATCTA
GAAGTTGAGAAAAATGTAACACTTACTCTTACAGACTCTTGTTAGGTTCA
ATAAAAATGGAGGCTTCACCTTCTAAACGAATTCATAAAGAGGTGAGTCT
TCAAACAAAATATATGGCGCTGTTGGAGCTTGAAAGtggaaaaacaaaca
aagaagttTGCTTAATGTTTGAAGTTCCCTCAAACACGATATCTACCTGG
AAGAAGAAcaaatccaaaatctttgaagctcTCAGAAATGGAAGTCCTGC
AAGTAAGAGGCTCAGAGTTGACAAATTTGATCAAATCAACAAAGCTGTTC
TACAATGGTTTCACCAAATGCAACTAGATAATGTTATAATTAACAGACCC
ATGGTCAGGGAAAAGGCTCTATCATTTGCAAAAGAGATGggagttgaaaa
ttttcatgctTCTAATGGTTGGCTTGAGAAATGGAAGAAAAGATACAACG
TCTCATTCAAAACTGCATCAGAGGCAGCAAAAGCTGAAAGAGATGGAATG
ATGCCTCCAAGTATTGAAGCAACTCTACCAATGCTCCTATCACGATATAC
TTTGAAAGACATTTTTAATGCTAAAGAATTTGGCTTGTTTTACCAGTGTC
TTCCTGGGACGATTAGCCATCTGGCAGAAGAGAACTGTGCAGACGGAAAA
CATAGTAGCTCTCGTTTGACAGTCGTTGCGGTTGCTAATGCATTTGGTGA
AAGAATGGAAATCTTTGTTATAGGTAAGCCTGCCAATCCTAGTTCCTCAG
AAGATGTTAAAAATATTCCATGTCGCTATCGATCTCAAAggaaaagttgg
atggattcaaGTTTATTTGAAGAGTGGGTTAGGGAACTGGATACCAAGTT
TGGCGAGTCAGGTAGAAAAGTTGCTTTGATTGTTAGCGATTCTTCTGCTC
ACCCTGATATAGATGGTTTACAATGGGTTGAGCTCATCTTTATTCCTCCA
AAAACTGACTCAATGACACAGCCCATGGATCAAGGTATTGTCAAAtatct
caaaacaaaattccgCTCACTTCAAGTCAAGAAACAGATCCTGGATTGTG
AGAAATTCAATGAGCTTTCCAAACTTTCTATCCCTGCTATTATGGCAATG
CTTTTACAGGCTTGGCTTTCTATCCCTGCTATTATGGCAATGCTTTTACA
GGCTTGGCATTCTATtccttttcaaacttttaccaGTTCTTTCAAGAAGG
CAGGTTTGCTAATTGAAGCTACAGAGAGAATATCAAATGATCATGATGAT
GAGTTTGTTATAACCATCTTGAATGAATTAGAAGCAAATCTCCTGTTATT
AAAGGAGAAATTTGGATTGGATTACAAATTAACTGCTGAACAACTTATCA
ACATTGACTCCCAGGTATCTGTCACTGGAACCTTATCAGATGCTGACATC
ATTGCTGGAGTTTATGGCAACTCTGTAGATTTGAGTGATGATGAACCTGA
CCAACCGCAACTggaggaaaaaattgttttaagaCCATCTAAAAATTCAG
TGTCAAATGCAATTAAAACTTTAGAGGATTATAGTGTGTTTTCCAAGTTT
GGCACTGATATAATAACTGCCTTAAAACAAATACAAAGAGCTGTTGATTT
GGACAACCAACTTATTAATAGTGGCTCCAAAAAAATCGAAGAGTAAAACC
TGTGAGACAGTGACATGGTTGTCTCttatttgtaatatattttgtaGTCT
ATTTTAAAGGTAGATAAAAAAACAGTCTTCTTTCTATCTGCTGAATGTTT
CAACCATTATCTCAAGAAGATTGCAACAGGGCATTTTACTGCATTTAtgt
gaaaattataaaatttaac
Run BLAST on NCBI

protein sequence of TCONS_00017436-protein

>TCONS_00017436-protein ID=TCONS_00017436-protein|Name=TCONS_00017436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
MEASPSKRIHKEVSLQTKYMALLELESGKTNKEVCLMFEVPSNTISTWKK
NKSKIFEALRNGSPASKRLRVDKFDQINKAVLQWFHQMQLDNVIINRPMV
REKALSFAKEMGVENFHASNGWLEKWKKRYNVSFKTASEAAKAERDGMMP
PSIEATLPMLLSRYTLKDIFNAKEFGLFYQCLPGTISHLAEENCADGKHS
SSRLTVVAVANAFGERMEIFVIGKPANPSSSEDVKNIPCRYRSQRKSWMD
SSLFEEWVRELDTKFGESGRKVALIVSDSSAHPDIDGLQWVELIFIPPKT
DSMTQPMDQGIVKYLKTKFRSLQVKKQILDCEKFNELSKLSIPAIMAMLL
QAWLSIPAIMAMLLQAWHSIPFQTFTSSFKKAGLLIEATERISNDHDDEF
VITILNELEANLLLLKEKFGLDYKLTAEQLINIDSQVSVTGTLSDADIIA
GVYGNSVDLSDDEPDQPQLEEKIVLRPSKNSVSNAIKTLEDYSVFSKFGT
DIITALKQIQRAVDLDNQLINSGSKKIEE
Run BLAST on NCBI

transcript from alignment at sc0000267:477952..480327+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017436 ID=TCONS_00017436|Name=TCONS_00017436|organism=Clytia hemisphaerica|type=transcript|length=2376bp|location=Sequence derived from alignment at sc0000267:477952..480327+ (Clytia hemisphaerica)
CCAATAAAATATATGGCACAAGAAAGACGTGTCTATCAAATTGCGTAAAT
GTACGGCATTCGGAATGAATCAAGGACGTatatatgtacggcattcgggt
tcaaaaggttaagaacaatAGATTAATAATGATCATCCCCAGATTATCTA
GAAGTTGAGAAAAATGTAACACTTACTCTTACAGACTCTTGTTAGGTTCA
ATAAAAATGGAGGCTTCACCTTCTAAACGAATTCATAAAGAGGTGAGTCT
TCAAACAAAATATATGGCGCTGTTGGAGCTTGAAAGtggaaaaacaaaca
aagaagttTGCTTAATGTTTGAAGTTCCCTCAAACACGATATCTACCTGG
AAGAAGAAcaaatccaaaatctttgaagctcTCAGAAATGGAAGTCCTGC
AAGTAAGAGGCTCAGAGTTGACAAATTTGATCAAATCAACAAAGCTGTTC
TACAATGGTTTCACCAAATGCAACTAGATAATGTTATAATTAACAGACCC
ATGGTCAGGGAAAAGGCTCTATCATTTGCAAAAGAGATGggagttgaaaa
ttttcatgctTCTAATGGTTGGCTTGAGAAATGGAAGAAAAGGTAGATAT
CAAATTCCATTAGTCAATTTTTAAACGTTAGTCACATGAGAAGAGTATAA
TTGTTGCCAAAGAGCTGATTGGTGTCTTNATATAAAATTCCATTAGTCAA
TTTTTAAACGTTAGTCACATGCCAAGAGTATTATAATTGTTGCCAAAGAG
CTGATTGATGTCTGTtgatctttgaaaatttattgtcaaaatcttctttg
ttgttgtttttactAAACTTTGTTTCAGATACAACGTCTCATTCAAAACT
GCATCAGAGGCAGCAAAAGCTGAAAGAGATGGAATGATGCCTCCAAGTAT
TGAAGCAACTCTACCAATGCTCCTATCACGATATACTTTGAAAGACATTT
TTAATGCTAAAGAATTTGGCTTGTTTTACCAGTGTCTTCCTGGGACGATT
AGCCATCTGGCAGAAGAGAACTGTGCAGACGGAAAACATAGTAGCTCTCG
TTTGACAGTCGTTGCGGTTGCTAATGCATTTGGTGAAAGAATGGAAATCT
TTGTTATAGGTAAGCCTGCCAATCCTAGTTCCTCAGAAGATGTTAAAAAT
ATTCCATGTCGCTATCGATCTCAAAggaaaagttggatggattcaaGTTT
ATTTGAAGAGTGGGTTAGGGAACTGGATACCAAGTTTGGCGAGTCAGGTA
GAAAAGTTGCTTTGATTGTTAGCGATTCTTCTGCTCACCCTGATATAGAT
GGTTTACAATGGGTTGAGCTCATCTTTATTCCTCCAAAAACTGACTCAAT
GACACAGCCCATGGATCAAGGTATTGTCAAAtatctcaaaacaaaattcc
gCTCACTTCAAGTCAAGAAACAGATCCTGGATTGTGAGAAATTCAATGAG
CTTTCCAAACTTTCTATCCCTGCTATTATGGCAATGCTTTTACAGGCTTG
GCATTCTATtccttttcaaacttttaccaGTTCATTCAAGAAGGCAGGTT
TGGNTGACTCAATGACACAGCCCATGGATCAAGGTATTGTCAAAtatctc
aaaacaaaattccgCTCACTTCAAGTCAAGAAACAGATCCTGGATTGTGA
GAAATTCAATGAGCTTTCCAAACTTTCTATCCCTGCTATTATGGCAATGC
TTTTACAGGCTTGGCATTCTATtccttttcaaacttttaccaGTTCTTTC
AAGAAGGCAGGTTTGCTAATTGAAGCTACAGAGAGAATATCAAATGATCA
TGATGATGAGTTTGTTATAACCATCTTGAATGAATTAGAAGCAAATCTCC
TGTTATTAAAGGAGAAATTTGGATTGGATTACAAATTAACTGCTGAACAA
CTTATCAACATTGACTCCCAGGTATCTGTCACTGGAACCTTATCAGATGC
TGACATCATTGCTGGAGTTTATGGCAACTCTGTAGATTTGAGTGATGATG
AACCTGACCAACCGCAACTggaggaaaaaattgttttaagaCCATCTAAA
AATTCAGTGTCAAATGCAATTAAAACTTTAGAGGATTATAGTGTGTTTTC
CAAGTTTGGCACTGATATAATAACTGCCTTAAAACAAATACAAAGAGCTG
TTGATTTGGACAACCAACTTATTAATAGTGGCTCCAAAAAAATCGAAGAG
TAAAACCTGTGAGACAGTGACATGGTTGTCTCttatttgtaatatatttt
gtaGTCTATTTTAAAGGTAGATAAAAAAACAGTCTTCTTTCTATCTGCTG
AATGTTTCAACCATTATCTCAAGAAGATTGCAACAGGGCATTTTACTGCA
TTTAtgtgaaaattataaaatttaac

Coding sequence (CDS) from alignment at sc0000267:477952..480327+

>TCONS_00017436 ID=TCONS_00017436|Name=TCONS_00017436|organism=Clytia hemisphaerica|type=CDS|length=4770bp|location=Sequence derived from alignment at sc0000267:477952..480327+ (Clytia hemisphaerica)
ATGGAGGCTTCACCTTCTAAACGAATTCATAAAGAGGTGAGTCTTCAAAC
AAAATATATGGCGCTGTTGGAGCTTGAAAGtggaaaaacaaacaaagaag
ttTGCTTAATGTTTGAAGTTCCCTCAAACACGATATCTACCTGGAAGAAG
AAcaaatccaaaatctttgaagctcTCAGAAATGGAAGTCCTGCAAGTAA
GAGGCTCAGAGTTGACAAATTTGATCAAATCAACAAAGCTGTTCTACAAT
GGTTTCACCAAATGCAACTAGATAATGTTATAATTAACAGACCCATGGTC
AGGGAAAAGGCTCTATCATTTGCAAAAGAGATGggagttgaaaattttca
tgctTCTAATGGTTGGCTTGAGAAATGGAAGAAAAGATACAACGTCTCAT
TCAAAACTGCATCAGAGGCAGCAAAAGCTGAAAGAGATGGAATGATGCCT
CCAAGTATTGAAGCAACTCTACCAATGCTCCTATCACGATATACTTTGAA
AGACATTTTTAATGCTAAAGAATTTGGCTTGTTTTACCAGTGTCTTCCTG
GGACGATTAGCCATCTGGCAGAAGAGAACTGTGCAGACGGAAAACATAGT
AGCTCTCGTTTGACAGTCGTTGCGGTTGCTAATGCATTTGGTGAAAGAAT
GGAAATCTTTGTTATAGGTAAGCCTGCCAATCCTAGTTCCTCAGAAGATG
TTAAAAATATTCCATGTCGCTATCGATCTCAAAggaaaagttggatggat
tcaaGTTTATTTGAAGAGTGGGTTAGGGAACTGGATACCAAGTTTGGCGA
GTCAGGTAGAAAAGTTGCTTTGATTGTTAGCGATTCTTCTGCTCACCCTG
ATATAGATGGTTTACAATGGGTTGAGCTCATCTTTATTCCTCCAAAAACT
GACTCAATGACACAGCCCATGGATCAAGGTATTGTCAAAtatctcaaaac
aaaattccgCTCACTTCAAGTCAAGAAACAGATCCTGGATTGTGAGAAAT
TCAATGAGCTTTCCAAACTTTCTATCCCTGCTATTATGGCAATGCTTTTA
CAGGCTTGGCTTTCTATCCCTGCTATTATGGCAATGCTTTTACAGGCTTG
GCATTCTATtccttttcaaacttttaccaGTTCTTTCAAGAAGGCAGGTT
TGCTAATTGAAGCTACAGAGAGAATATCAAATGATCATGATGATGAGTTT
GTTATAACCATCTTGAATGAATTAGAAGCAAATCTCCTGTTATTAAAGGA
GAAATTTGGATTGGATTACAAATTAACTGCTGAACAACTTATCAACATTG
ACTCCCAGGTATCTGTCACTGGAACCTTATCAGATGCTGACATCATTGCT
GGAGTTTATGGCAACTCTGTAGATTTGAGTGATGATGAACCTGACCAACC
GCAACTggaggaaaaaattgttttaagaCCATCTAAAAATTCAGTGTCAA
ATGCAATTAAAACTTTAGAGGATTATAGTGTGTTTTCCAAGTTTGGCACT
GATATAATAACTGCCTTAAAACAAATACAAAGAGCTGTTGATTTGGACAA
CCAACTTATTAATAGTGGCTCCAAAAAAATCGAAGAGTAAATGGAGGCTT
CACCTTCTAAACGAATTCATAAAGAGGTGAGTCTTCAAACAAAATATATG
GCGCTGTTGGAGCTTGAAAGtggaaaaacaaacaaagaagttTGCTTAAT
GTTTGAAGTTCCCTCAAACACGATATCTACCTGGAAGAAGAAcaaatcca
aaatctttgaagctcTCAGAAATGGAAGTCCTGCAAGTAAGAGGCTCAGA
GTTGACAAATTTGATCAAATCAACAAAGCTGTTCTACAATGGTTTCACCA
AATGCAACTAGATAATGTTATAATTAACAGACCCATGGTCAGGGAAAAGG
CTCTATCATTTGCAAAAGAGATGggagttgaaaattttcatgctTCTAAT
GGTTGGCTTGAGAAATGGAAGAAAAGATACAACGTCTCATTCAAAACTGC
ATCAGAGGCAGCAAAAGCTGAAAGAGATGGAATGATGCCTCCAAGTATTG
AAGCAACTCTACCAATGCTCCTATCACGATATACTTTGAAAGACATTTTT
AATGCTAAAGAATTTGGCTTGTTTTACCAGTGTCTTCCTGGGACGATTAG
CCATCTGGCAGAAGAGAACTGTGCAGACGGAAAACATAGTAGCTCTCGTT
TGACAGTCGTTGCGGTTGCTAATGCATTTGGTGAAAGAATGGAAATCTTT
GTTATAGGTAAGCCTGCCAATCCTAGTTCCTCAGAAGATGTTAAAAATAT
TCCATGTCGCTATCGATCTCAAAggaaaagttggatggattcaaGTTTAT
TTGAAGAGTGGGTTAGGGAACTGGATACCAAGTTTGGCGAGTCAGGTAGA
AAAGTTGCTTTGATTGTTAGCGATTCTTCTGCTCACCCTGATATAGATGG
TTTACAATGGGTTGAGCTCATCTTTATTCCTCCAAAAACTGACTCAATGA
CACAGCCCATGGATCAAGGTATTGTCAAAtatctcaaaacaaaattccgC
TCACTTCAAGTCAAGAAACAGATCCTGGATTGTGAGAAATTCAATGAGCT
TTCCAAACTTTCTATCCCTGCTATTATGGCAATGCTTTTACAGGCTTGGC
TTTCTATCCCTGCTATTATGGCAATGCTTTTACAGGCTTGGCATTCTATt
ccttttcaaacttttaccaGTTCTTTCAAGAAGGCAGGTTTGCTAATTGA
AGCTACAGAGAGAATATCAAATGATCATGATGATGAGTTTGTTATAACCA
TCTTGAATGAATTAGAAGCAAATCTCCTGTTATTAAAGGAGAAATTTGGA
TTGGATTACAAATTAACTGCTGAACAACTTATCAACATTGACTCCCAGGT
ATCTGTCACTGGAACCTTATCAGATGCTGACATCATTGCTGGAGTTTATG
GCAACTCTGTAGATTTGAGTGATGATGAACCTGACCAACCGCAACTggag
gaaaaaattgttttaagaCCATCTAAAAATTCAGTGTCAAATGCAATTAA
AACTTTAGAGGATTATAGTGTGTTTTCCAAGTTTGGCACTGATATAATAA
CTGCCTTAAAACAAATACAAAGAGCTGTTGATTTGGACAACCAACTTATT
AATAGTGGCTCCAAAAAAATCGAAGAGTAAATGGAGGCTTCACCTTCTAA
ACGAATTCATAAAGAGGTGAGTCTTCAAACAAAATATATGGCGCTGTTGG
AGCTTGAAAGtggaaaaacaaacaaagaagttTGCTTAATGTTTGAAGTT
CCCTCAAACACGATATCTACCTGGAAGAAGAAcaaatccaaaatctttga
agctcTCAGAAATGGAAGTCCTGCAAGTAAGAGGCTCAGAGTTGACAAAT
TTGATCAAATCAACAAAGCTGTTCTACAATGGTTTCACCAAATGCAACTA
GATAATGTTATAATTAACAGACCCATGGTCAGGGAAAAGGCTCTATCATT
TGCAAAAGAGATGggagttgaaaattttcatgctTCTAATGGTTGGCTTG
AGAAATGGAAGAAAAGATACAACGTCTCATTCAAAACTGCATCAGAGGCA
GCAAAAGCTGAAAGAGATGGAATGATGCCTCCAAGTATTGAAGCAACTCT
ACCAATGCTCCTATCACGATATACTTTGAAAGACATTTTTAATGCTAAAG
AATTTGGCTTGTTTTACCAGTGTCTTCCTGGGACGATTAGCCATCTGGCA
GAAGAGAACTGTGCAGACGGAAAACATAGTAGCTCTCGTTTGACAGTCGT
TGCGGTTGCTAATGCATTTGGTGAAAGAATGGAAATCTTTGTTATAGGTA
AGCCTGCCAATCCTAGTTCCTCAGAAGATGTTAAAAATATTCCATGTCGC
TATCGATCTCAAAggaaaagttggatggattcaaGTTTATTTGAAGAGTG
GGTTAGGGAACTGGATACCAAGTTTGGCGAGTCAGGTAGAAAAGTTGCTT
TGATTGTTAGCGATTCTTCTGCTCACCCTGATATAGATGGTTTACAATGG
GTTGAGCTCATCTTTATTCCTCCAAAAACTGACTCAATGACACAGCCCAT
GGATCAAGGTATTGTCAAAtatctcaaaacaaaattccgCTCACTTCAAG
TCAAGAAACAGATCCTGGATTGTGAGAAATTCAATGAGCTTTCCAAACTT
TCTATCCCTGCTATTATGGCAATGCTTTTACAGGCTTGGCTTTCTATCCC
TGCTATTATGGCAATGCTTTTACAGGCTTGGCATTCTATtccttttcaaa
cttttaccaGTTCTTTCAAGAAGGCAGGTTTGCTAATTGAAGCTACAGAG
AGAATATCAAATGATCATGATGATGAGTTTGTTATAACCATCTTGAATGA
ATTAGAAGCAAATCTCCTGTTATTAAAGGAGAAATTTGGATTGGATTACA
AATTAACTGCTGAACAACTTATCAACATTGACTCCCAGGTATCTGTCACT
GGAACCTTATCAGATGCTGACATCATTGCTGGAGTTTATGGCAACTCTGT
AGATTTGAGTGATGATGAACCTGACCAACCGCAACTggaggaaaaaattg
ttttaagaCCATCTAAAAATTCAGTGTCAAATGCAATTAAAACTTTAGAG
GATTATAGTGTGTTTTCCAAGTTTGGCACTGATATAATAACTGCCTTAAA
ACAAATACAAAGAGCTGTTGATTTGGACAACCAACTTATTAATAGTGGCT
CCAAAAAAATCGAAGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009758XLOC_009758Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017436-proteinTCONS_00017436-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017436-exon-sc0000267-1491911889:477952..478543TCONS_00017436-exon-sc0000267-1491911889:477952..478543Clytia hemisphaericaexon
TCONS_00017436-exon-sc0000267-1510915933:477952..478543TCONS_00017436-exon-sc0000267-1510915933:477952..478543Clytia hemisphaericaexon
TCONS_00017436-exon-sc0000267-1575043694:477952..478543TCONS_00017436-exon-sc0000267-1575043694:477952..478543Clytia hemisphaericaexon
TCONS_00017436-exon-sc0000267-1491911889:478780..479453TCONS_00017436-exon-sc0000267-1491911889:478780..479453Clytia hemisphaericaexon
TCONS_00017436-exon-sc0000267-1510915933:478780..479453TCONS_00017436-exon-sc0000267-1510915933:478780..479453Clytia hemisphaericaexon
TCONS_00017436-exon-sc0000267-1575043694:478780..479453TCONS_00017436-exon-sc0000267-1575043694:478780..479453Clytia hemisphaericaexon
TCONS_00017436-exon-sc0000267-1491911889:479625..480327TCONS_00017436-exon-sc0000267-1491911889:479625..480327Clytia hemisphaericaexon
TCONS_00017436-exon-sc0000267-1510915933:479625..480327TCONS_00017436-exon-sc0000267-1510915933:479625..480327Clytia hemisphaericaexon
TCONS_00017436-exon-sc0000267-1575043694:479625..480327TCONS_00017436-exon-sc0000267-1575043694:479625..480327Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:477952..480327 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.62251	6.91928	2.14238	4.36664	8.4914	8.88367	8.31993	8.51559	3.55313	3.68673	2.1675	2.35499	3.2266	3.52706	5.19305	6.24553	3.66944	6.67284	2.34663	2.80637	6.09811	3.56934	19.1639	16.1078	4.43626	4.66282	4.7566	3.23042	9.97564	11.2335
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006600HTH_CenpB_DNA-bd_dom
IPR004875DDE_SF_endonuclease_dom
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00017436 vs. Swiss-Prot (Human)
Match: TIGD4 (Tigger transposable element-derived protein 4 OS=Homo sapiens GN=TIGD4 PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.640e-60
Identity = 128/396 (32.32%), Postives = 206/396 (52.02%), Query Frame = 3 
Query:  237 KEVSLQTKYMALLELESGKTNKEVCLMFEVPSNTISTWKKNKSKIFEALRN--GSPASKRLRVDKFDQINKAVLQWFHQMQLDNVIINRPMVREKALSFAKEMGVENFHASNGWLEKWKKRYNVSFKTASEAAKAERDGM-MPPSI---EATLPMLLSRYTLKDIFNAKEFGLFYQCLPGTISHLAEENCADGKHSSSRLTVVAVANAFG-ERMEIFVIGKPANPSSSEDVKNIPCRYRSQRKSWMDSSLFEEWVRELDTKFGESGRKVALIVSDSSAHPDIDGLQWVELIFIPPKTDSMTQPMDQGIVKYLKTKFRSLQVKKQILDCEKFNELSKLSIPAIMAMLLQAWLSIPAIMAMLLQAWHSIPFQTFTSSFKKAGLLIEATER-ISNDHDD 1400
            K +S++ K   +  +ESGK   E+   + +  N++S+  KNK K+ EA  +    P  KRLR   +  + +A+++W+   Q  NV +N PM+R KA  FA+++G  +F  SNGWL+++K RY + F+    A   E  G+ + PS    +  LP  L+ Y  K++FN KE GL Y+ LP        E C+ GK    R+T+V   N  G E++ + VIGK   P   + +K++P  Y + R +WM S +FE+W+R+LD +F    R+V + V    AHP++  L+ +EL F P    S    M QG++K LK K+R   +KK +   E   E +   + A+  + L                W ++  +T   S+++AG   +  E  I+N   D
Sbjct:   19 KSLSIEEKIDIINAVESGKKKAEIAAEYGIKKNSLSSIMKNKDKVLEAFESLRFDPKRKRLRTAFYTDLEEALMRWYRIAQCLNVPVNGPMLRLKANDFAQKLGHNDFKCSNGWLDRFKSRYGLVFR----AQPVEATGVPVDPSTVWYQNVLPYYLNDYHPKNVFNIKETGLLYRMLPTNTFAFKGETCSVGKLCKDRITLVVGTNMDGSEKLPLLVIGKKRTPHCFKGLKSLPVCYEANRMAWMTSDVFEQWMRKLDEEFQAQQRRVVIFVESFPAHPEVKNLKSIELAFFPSCLSSKCIAMKQGVIKSLKIKYRHCLIKKFLSSVEGSKEFTFSLLDAVDTLHL---------------CWRAVTPETIVKSYEEAGFKSQKGESDITNAEKD 395
The following BLAST results are available for this feature:
BLAST of TCONS_00017436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TIGD42.640e-6032.32Tigger transposable element-derived protein 4 OS=H... [more]
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