TCONS_00017422 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017422
Unique NameTCONS_00017422
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017422 ID=TCONS_00017422|Name=TCONS_00017422|organism=Clytia hemisphaerica|type=transcript|length=2322bp
GCGTTCTGCAAAATAATCTATGCTTCTGAACGCCTCGAAGGAGAAACAAA
CGCTGGATTCGGTTCCCTGGATTCATCGAAGAAAACCCGGGAAGCCAAAG
GCAAAAGGCGTGTAAAAAGCCAAGAAAAAGCTACACATTTCAGAGgGCAC
AGAAATGGTGATGGCACAATACACAAATACTCAATATGTTGCCCATGAGT
TTGTGAGACAATATTACACTATTTTGCATAAAGATCCAACTCAACTCCAT
AGGTTTTATACCAAGGAATCTAGGCTCACTCATGGTGTTTCCCCTAATGC
TAAATCGGACGAACAACCTGTTTGCGGTCAAGAGGCTATTTATGAGAAGA
TTTCTCAGCtgaacttcaaaaattgttttaccAAAATCCGATCAGTTGAC
AGTCATCCAACCTTGGCTGGTGGTGTGGTTATCCAAGTCAATGGTGAATT
GGCAAATTCAGGAATGCAATACAGGAAATTCATGCAAACTTTTGTTTTAG
CCCAGCAGGAACCCAAGAAATACCATGTTGTGAATGATATTTTTCGTTAT
CAAGATGAAACTTTTGAGGATACAGAAAATGATGAAACTATTGATGGAAC
TGTTGAATCTGAAAATGGATACCAAACTTACGATGGGGTTCAATCAAATG
ATTTGAATGATGTTCCAATTGACCAAGAAGTCCCCTTGATCACCAACAAC
AAACCTTTGATTGACGAGCCTACTGATGATTATGCTTACTCTGGATACCT
TCAAAACGAcCAAGAACAAGAGCCAAAAATGAATGGTGACATTGCAAGCG
AGGAGCCAGAAGAAGTTCAAAATGATGAGTCTGAGGCTCAATATGTTGAA
GAAGAACCTGAACTACCTGTTGAAGAGCCTGCTGATGTTGAAGTCCCAGT
TGAACCTGTCCCAGAACCGTCCATTACTGAAACTGCTGAACCAACCCAAG
AAGAAATAAAACCCATTGTGAATGAACCCGAAGAACAAGTACAACCTACT
GAACCTGAAGGACCACCTAAACCAGTTACTTGGGCTGCACTTGCGAAGAA
GAACACGGCTTCATCTGTTGTTGTGGCACCTGTCGCTACTCCTCAACCAA
AGCCTGCTcccaaaaagtcCTCTCCAGCCCCTCAGAAAGCCCCACCTAAG
AAACGTGAAGAACCACAAcccaaaaaagaacaaagtGAGGAACCAAGACG
GCGAAACATTGCCCCAGATAACCATCAAATTTTCATCGGAAACTTACCGA
CCAGTATTACGGAAAAGGACGTTCGCGACCACTTTGGAGAATTCGGGAAC
ATCATTGAGATTCGACTTAATGCTAAGAATTTTGGATTTATTGCTTTTGA
CGGACCCGATGCACCTTCGAAGATCTTAACTAAGGCAAAGGTCAAAATGG
AGAGTATCGTGATACATGGAAACACTATTAACATTGAGGTGAAGCGTAGT
GGCGGGGCTGGGCGTGAAAGAACTAATGAACGAGGTGGAGGCGGTGGTTT
CCGTCGCGACCGTGGAAGTGACAAGGAAAGGCGTGGCGGCGGAGACAGAG
GCGGGGATCGATCggattttaataaaaacaaaaataacggACAATTTAAC
AACAACAGATCAAGCGGTGGAGGTGGTAAGAACTCTTCTTTTGGTAGCGG
ACAAAAATCTCGAAATAATGATGGCGGAAAATTTAACGATGACAACAAAG
GACAAAGGGAACAAAAACGCGGAGAATTTAATAAACAAAATCGACGATAG
GAAATTTTTggttgtaaagaaattttggatAGAGAAGGTTTATTGGAAAA
ATTGAGCTTCAGTTTTCTACAGGACCAGCGAAAGGATAGAAAGATATTAG
TGCCAATATTGGAATAAGTTCTTTATTGTCAAATTGCGTTTCTGTTTGTA
ATATTTTTAGCCTCCtcaggatttttttttcaaatatttttatcagaACC
GGTCATCTATAACTTATCAagatattgtaatttttaagtttttatttttt
gtttccgTTTGAGCTGTCTCGTTAGGTTTTTTACAaagcaatttcttttt
caaaatgataacCAATGATATTGATGGCTTTTTATGatagaattcttccc
tttaactAGTTGACTTTCTGTATTCTTCCAAAAGGTTGATTACCAAATCT
TCAAAGGTTTTCTGAGAGAACAAAGTTTGACATTTTGATTGGAAGAAAcg
atattgaatattttttttcatttcttacaattaattattttttattttgt
gttctCAAAAATAAGGGGAGATATATTACAccgggaatttttttcaaaat
aaatgaataaattgaaaatatc
Run BLAST on NCBI

transcript from alignment at sc0000267:354206..373290+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017422 ID=TCONS_00017422|Name=TCONS_00017422|organism=Clytia hemisphaerica|type=transcript|length=19085bp|location=Sequence derived from alignment at sc0000267:354206..373290+ (Clytia hemisphaerica)
GCGTTCTGCAAAATAATCTATGCTTCTGAACGCCTCGAAGGAGAAACAAA CGCTGGATTCGGTTCCCTGGATTCATCGAAGAAAACCCGGGAAGCCAAAG GCAAAAGGCGTGTAAAAAGCCAAGAAAAAGCTACACATTTCAGAGGTATT TATTTATTGGTTTGGCTATTAGAACTGCAATTGTTGGAGTTCTGTCTTAA CATGATACCATGAGCTATTTATGTCAGGATATGGGCTCAAATCTGGACTG TGTTGGTTCAATATTGAACCAGATGTTcatcattttttggaaaattaggC CAGGTGTTTTTTGAAATGATTGTAGTCAGTGTTCTATTTAACCCCTCTGT TCTTTGGAATTGGATCATTCCCTTTGCGCCTATATCTCTCAGGAATACAC AATAGCTCatgaatatttttagtttttagttttagttAACAAATAACCAG TCTGGGCCATCTTGCCaaccacaaaaaaacaacattgaTTGGAGGTTTTT TAGTTtacgaacccccccccccccctagtcaGGAACAATGTCTTACTTAG GACATCATATCTTAGTTAGGACATATGTACTAACtaggaaataaaaaatg tcCTTACTAGGCAATAAAAAATGTCCTTACTAGGCCATTTTTTGcaaagc gaatttatgagcgaagcagtttagctatattgtgtgcacgtacctttaac ttctatcccaagcgaaaatttgctataaaatttaagcagtggttcttcgg ttttaattgtttattttgctgcacgtgcgtttgcgtagcgGTAAAATGga gaaatgcgaaaatcgaatttggcaaaaaatttttgaaaaatgaccctaca agatttgactatatctttttattccatgaagagattaNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaagcgaaa gtgaaatcgcgcgatctgattggatgaaaaaagaccgcgggagctggaaa cgaatggaattctctagaattctcattcgaAAAACAAGATGACGGCGAGA AAAGcgcgtcttttgctttggacgaaaggttgtaaattctggtgttgatt ttaaggttttatcttatctcatctcatttactttaattagtagaggcttc ttcaatgtttggggatggtaagtctgtaaaagttatttgtttttcggtNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNTtaacagaacatagtaaaacta ttcaggaacttagacctttttacagaatttcaaaaaatctgttagttctg gagatatattgaaaagtttaggcATGAGTAGttcgcgttcgtgtttcgcg ttcccaaaccaaacgcacgtggctgttaaatggaaaaaaattagtttgaa cggtgaAAGAAAGGatatcttcatcatcccttgactttaacagcaagtat caagtatcaaataaggtcaatgaataagaggtttttgcaagtcgcacggg cgggaggagtgctcttttagtgaacgaaacccCAGGAGGGGgttactagg gcaagatgggttatgGGGATGCTCTGCTGGTCAGGGTACATTTTTAACCT CCACAAGTCCCAgatagggtcgcaaaaacaccaaaatagaaaaatcccag tccctcgtagggtgcctatttttggaaaatttggggaaaaaatagaaaat ttgacaaaattttggaatttcagttccattcagggtcacttctTTTCGCA agtttcgagtcccacgtagggtccatcaAAACTgccccaagaaccaacaa gccatctttgtacatttttgtttttgttttatttttatgttttgatgatt ttgacagacgattcgtgatttgaataaaaatgcGAATATccttcgatttt attaaggcaccatttacactagaataactagaaggaaaaaaagagcgATA TGcgggcggcgggtgttgtgctgccgtggattatgtggcgtgtttggggc attaaggctcttacgaccctgtctctatagcggctttattaaagggattt ttagagtgtctcttattttgctagcaatttgcgaattgaggtggagtctg gatcgcttcgcaactctTATACAATACAGCTAGTTCTATTTTTGCCTATA actcaaaatcaagaaaaatgcaCACTTTCTTACCATCGCCAATCGAAAGA GCACCAAATAATAAAGGTTCTAgttgattttcaaatattttggtctaAGG AATCAAGAAATATCTTATCCTAGCCCTAAAGCCTAGTCTACATGTTACAA AAACCCGAAATTTAATGATGTAGACAGTCCTTTATTTGTAACATCAGGAA TTCATAATGGTAGACCAAGTGGCGATGGTAAAGTAACTTTATTGTTCCGT TCCTGTTCTGCTGTATTACAAGTTGTACATTCAAAGACACATAGAGAAAA AACACTACCGcagattttgaagaaattttcaacataTACCAACTAAAGGT CGCTCTTTCTATTGGTTATGTTTTTAACATGCGCATTTTCCtctaaaatg tctaaaaaggttgttcaaattaaaaatgtccTACTTAGGCCATCTATGGC CTAATTGGGACATAAAAAATGTCCTTCTTATGCCATTGTCCTGACTAAGA GATTGTTCCTGACTGACCCCTTTAGTTTACCGTAACTTGGTGTAATGCCA ACATACCTTGTCTAGTTCCGTCATAGCAACTTTCTGGTCTTtcaccatca actgctctaacttgggactatctgacaaaataTCGGAAGGTtattcagcc accatttcataacctgatagcagctgtggagttttcttaatgcaacacgc tgaagctctaaagatcgctaaggggtcactcacatatagATTCTTCCCAC AACaaactaacgtcaaattgacgcgaagAGGTGGGGGTTAGAGTCtgtga cgctaagaaatttcatcagaaatattgattttttttcttgacaaatgttg ctttccatatttcttttcctccttttatatTTTGCTTCGCTATCTTATAG aacaattttaaccaaaacaaacggcccaaTGTTTATGTCTCGTGTTCCTT TTGTCTAGACGGTCCGTGCGGCCCTTGAATTTTGCAGAGggttgttcttt tttttgtgaaatgcaGCTATTCTGTTGATTATGATTACAGAGATAATTAA TTCCGCCAACTTTGCGAAAAAGTTTATaaattatctccattattttttaa atgtaaactgAGCACAGAGCCttacagggctgcaaataaatatttttagt caatctgACATCATGCccgacagaaatgaaatcctgtcagtcaaactcaa aatcctgtcggtcaaactcaaaatcctgtcggtcattcagtgtatatatt tttaaaagttacggagaaagcgagtaggaaaaataaaagttacctttgaa cagtttcttactgtatataacagagaaattgattcgataaaagtgatctt agaaacaccctttggaagttacgaagaaagaatgTTGAtgaaagttaact tagaaacacttatgaaagttatgaagtaagcaagttgatgaaaatggtct taaaaaaactcttgaaagttacgaagaaagcgagtcgataaaagtttaac tttgaaacacccttgaaagttacgaagaaagcgaattgataaaagtgatc ttagaaacactcttgaaagttacgaagaaagcaaattgataaaagtgatc ttagaaacaaagaaggttatgaagaaagcaagttgacaaaagtaatttag aaacaCCTTTAAAAGAGTTATACAAAGAAagcgggttgataaaagtgatc ttagaaacaaagaaagtaacgaagaaagcaagtcgataaaagttaactta gaaactaCCTGTATGCTACAAAGGAAGcaagtattaaaagaataggctaa gtaagagacaggggtgtaagagatttattttcaactctcaagttaatggt ttattccttttttcattNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc cgacacaaaagattttcagtcggtcaaatagctttttcagtcggacattg accgatgaccgacgcttatttgcagccctggccttagcgaaattaaagat ggctgacgaaacaacgatgaaagtgaaggagaaaatttagagtttcattg atttttgataacttttcaaCTTTGACGGTAAGAGGTGGGGgtggggggtt ttcaaattagCGTCAATTTAACGTTAGTCgattttactaccagggtagta aaatacctcttccaagagtctagGTGGTGCTATGTaagaattcgtaaaaa tccttttactactcatatatgtctgagattttactaccgacccccccccc tgcttagtTTACCACCTTAAATGGTATATTAAGTATACTtaataatatga aaaaaaagtatgaaaagaGATTTGGACTCGCATGAATTACTCCCCcctta aattcaaattttttttttctttgttcccCTTAAACATGAATCCCCCctca tttctgaaaatttcaaaaactttgccCTTAAAATTTTGCCCAAAATTCAA GTCCCCCCTTATTTTAAGTTGTTGTATTCAATATCTATAATTTACTGTGC GCTAGATTCACCTTGTCACAACAAGGCTACCATTATGAAATTTCTTTGTT ATTAGGCTCTGAATACATCAGAATTATTTGGTTTTTAGACGTAAAATTGG CCTTAAAGCCTTAAAGAATAATTAAAGACCAATGAAACCTTTTGAAAGTC ACTCTATGGAGTCATTTTCTTGTGCTCTTTCCAATGGTAGTACTTAGAAC TTGTGCCGCTTTCGTCGTTTCAAGATATTAGCCCGGTGACTTATAAGGTT ATCAAAATGACTTTATAAGGACATTGGTGTCCTGATGAGAACAGCTGTCC TAATTAGTCAATTGTTCCTCCTGACTGTATAACAATCAAGGAATTCCCTC AATTTTAGTAGTAATTTTTCATGGCGATTGCTGTTTTtctcaaattattt ttgataatcAATGTTTGTTTACctttgtcgaccagcactatatgtacTCA TTAAAAGCCTTTATAGGCTAAACACGAATGAAAACTTCCATAATATTGCA GTATACTTCAGTTGAGGGAATTCCCTGACTCTGAATAACTAAGGTTTCCA TTTGAAACATGGAGTTATTGAAAAGTCAATAACGCTGAATAATATAAAAG CCCCACAGCCACACCAAATgctaatattaatatatactagCCTATAACGA TAAGAAGAATATGAACGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 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CTCGcacagtttttatttttttaaataacaatttgtaaactttttcacaa aatttcttgaaattaatTATCATCACAATTTATAATGGCAGACAATATGA CTGTCTGCTGTGAAAATTTGAGGGTCCTGTTCTCTGTCAAATAAAGAGAA CCTGAGACATAGACAACGAgcggtttgttttggttttcaaaacagcTGAA ACCATCAAAAAGAAACATAGCAAAGTAACATTGCAAATTAACATTTGTCA TGGAATAAACTTCttcaaaattgatatttctgGTTAAAATTTCTTTGCCA CAAGTAAATTTCCACAACCTACACATCAACCCTCTCTGAAAGTCAAATAG ACGTTTTTTGTGGCAAATTTGAGGCTGGATGGCTCCTCTTATGCAAATGT GTCACTAGAGCTAGAACTGACCCTTCCCTACACACCTGTTTGAGTAgggt aaatttttatttattctgtTTGGCTAATAAAGTTTAGTACCATTAAAATC AATGctgaaaatgattaaaatttttgataactAGTGGAAGACGGATGGCC AGCGGATTgctaaagttttaaaaaaaaagaaaaaattcaaaatgccgGCG AACAAGCCTTGACCATTGATTttagtcaatttgagggtgctgattccgaa tttgaatgttaccaagcttgaaaaccctcAGTTTTGGCGTAATTTGCGAC TTTTTGCGTTTGCGttaggcaaaattgtaaaccctgaaaaatgatttttg aggggtcttcaaaatcaaaaaagacctgtATCACGTGATagagagctctt caaactgagaaaaaaatgtattatatcaaagtctcaacttatctagatca aaagttatagacaATTTTGTGgtgaaaaattgattgaaaacagggaattt acCCACAATTTTCCCTAATTAATTCTTTCAGCTCAAATTGTCAATACTTA TCATGTGTAATGATTGGACAATTNattgaaaacagggaatttccccacaa tttTCCCTAATTAATTCTTTCAGCTCAAATTGTCAATACTTATCATGTGT AATGATTGGACAATTAACATGTACTCtttatcagatttttaaaagtcaga aaatttaaaatcactTCAAAAAACTTTCTTGGAGATAAACACAAAAGGCC CTTGATGTTTCATTGTACCATATTAAAGTACTATCTGGAAGTATattgaa attactaaaaaaattacatttcaacttttttttgtctcTATATTCCGACA CTCTTAGTGATAGTGCAACTAACTGGCATTTAGAGTTGCATCCTGTTTCA GTTGAATTTAGACAGCCGAGGCTTGGAGTTTCAATGAAGAAAACTGAaag ataaaataatttttgttttaataggGCACAGAAATGGTGATGGCACAATA CACAAATACTCAATATGTTGCCCATGAGTTTGTGAGACAATATTACACTA TTTTGCATAAAGATCCAACTCAACTCCATAGGTAATTTACCTTATAAAgc actttttaaaaatcatacATACTTGTTCACCCTGTCCATCAAAATATACT TAATTTTGTTGAAGTTTTGCTCATTATTCCTTCAAATTACTAAGTAAAGT AAATAAGTATTTTACTCTTGAACATGATTGTTTGAGTATTCCTGAGTAAG TTAATTGCTTGCATCTTTACTGAATTTGTTTATGTTATCTTAGGTTTTAT ACCAAGGAATCTAGGCTCACTCATGGTGTTTCCCCTAATGCTAAATCGGA CGAACAACCTGTTTGCGGTCAAGAGGTAAATATCTATCAATTTAATGAAG AAGATCAAAATAAACAACTAAATAGTCAAAAcaagattttaattttgcgC CAATTCAGCTTTTCGCACATGTTTTTGTTGTTTACTCTGCAAAACatcta ttttcaaatttaatgaagaaTCATAAAGTTCCTtgaatttttgtatttat tttgagtcttatattttatcaaaactttttgcTATTCCAAACACAACAAT GTTGAGAagtcatattttttttttgcaggcTGTGCTTCCTCTCTTTAACC TTTTAAAAAACCAATTGcagtagtagggggaattttgttcgattttttgg aatcgcttgactgttttgttagaagcacttgttatacatttttggaaagc taaggggtaggggaatcgaaattaaNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAtagagctaaaatttt cattaatttttaaccctatgatttttgcctgagaccgtcatatttgtcca aaaatcacaccaaagtgtccgaaaaaaaattggaaacNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAt attaatttcgattcccctaccccttagctttccaaaaatgtataacaagt gcttctaacaaaacagtcgagcgattttacaaaatgccctctactacaGG TCTACATTAGCAAAATAACTTAATTAATTGTAGGTTTTTACAGTCTTGtt gattaattttattttgtctCAAAGTAAACCATTAGCCTTAACTTTATCCT TCAGGCTATTTATGAGAAGATTTCTCAGCtgaacttcaaaaattgtttta ccAAAATCCGATCAGTTGACAGTCATCCAACCTTGGCTGGTGGTGTGGTT ATCCAAGTCAATGGTGAATTGGCAAATTCAGGAATGCAATACAGGAAATT CATGCAAACTTTTGTTTTAGCCCAGCAGGTATAgccaaactttttcaaaa taatttatctgCCATTATCTTGTACTTCTAATATCAATACATGAAAAATT CCCTACATTTATTATTGGGAGCTCGATGCATCTTCTTACAATCTCAATAA ATTGCTCAAAGTTTTCTCacagtttaatttttcaaccatCAGCAAAATTC CATCCTTTGTAACGATTCAAGTCTGTTTTAACTCGACCaattatattaaa aaagaaCCATTgctcaataatgtttttggctTAATTCCTCTGTTATTCAA GGAACCCAAGAAATACCATGTTGTGAATGATATTTTTCGTTATCAAGATG AAACTTTTGAGGATACAGAAAATGATGAAACTATTGATGGAACTGTTGGT AAGTGTTCTCAATTTCAGTTAAACCAGTTTCAGAGGATGtctcaaaatga tcaaaatttgGCTGACACGTTTTTAAAATCACGTGGTGAATCCCTGGTGG TACTTAGAAATCTTGAAAGGAGTTATAGTCAATTATCTTTGTCTGAGCTG AAGAAAGGTACATTCGTCGTCATAGTAGATGAgtccattttattttatct atttttaagAATCTGAAAATGGATACCAAACTTACGATGGGGTTCAATCA AATGATTTGAATGATGTTCCAATTGACCAAGAAGTCCCCTTGATCACCAA CAACAAACCTTTGATTGACGAGCCTACTGATGATTATGCTTACTCTGGAT ACCTTCAAAACGAGTTTGTCCTTGTTTTGATTGTCCCAAAATTTCATGCT ATCAAAGATTCCCATTTCAGAGTTTTATCTTTACCCTGCATTTATTGTAA AAAATGGTAGCAGCTTTCTTTGTCAATCTTACAATCAATGTTCACGGATG GATTATATTTGAAAGTAAAAACTCTGATCTTGAGTTATTTTACTTCAAAT CGAGAATTTTTCTCGTTTCTTTTCAATGATAAATTGTAAACATTTGCTGT ctacttttgatttttgtagcCAAGAACAAGAGCCAAAAATGAATGGTGAC ATTGCAAGCGAGGAGCCAGAAGAAGTTCAAAATGATGAGTCTGAGGTAGA GTTGATGAGAGGTTTTCAAAATTAGGTTGATTGATTGGTTTCAACCATCT AGATTGACTTTTATTTGGTTGCTTTACAGCTTTCATGATAGAGCaccctt tgtttactttgtgcATTACAGTTTGCAAATCATTATTATTTCCAGTGAAC CAAAGTGAATTAGTTGCATTTTCATCAGATTTAACTAGGTACAAAGCTGA ATTGAGAGATGAATTGACATCTATagattttgtttcatttcataGGCTCA ATATGTTGAAGAAGAACCTGAACTACCTGTTGAAGAGCCTGCTGATGTTG AAGTCCCAGTTGAACCTGTCCCAGAACCGTCCATTACTGAAACTGCTGAA CCAACCCAAGAAGAAATAAAACCCATTGTGAATGAACCCGAAGAACAAGT ACAACCTACTGAACCTGAAGGACCACCTAAACCAGGTTTGTGGGCATAAC TTAAACAAATATCGCAGCGTGTTAGCACTCTCACGCTTTAAATACTTAAA GCCTTAGATTTTATCACttttaagatattaattttGTCAAAGAAATATGT ATGTATTGATTTGGTTGAATAGATGTTCACATATTTCTCCCTGTTaacaa ttttttctattcatAGTTACTTGGGCTGCACTTGCGAAGAAGAACACGGC TTCATCTGTTGTTGTGGCACCTGTCGCTACTCCTCAACCAAAGCCTGCTc ccaaaaaggtttttttcttaaaattgactTGTTAATTTCATACGTTAACA CTTGGTTTGAAtggaaaaattgatgtttagGTTCTTGCTTTGATCTTCAA Ccaaagtttttgatttgttatttgttttttgttttttccaaaaatataaa atttttcagtAATACCTTTATGTTGATTAGTCATGCTGCGGTTTCGACCC CAATTCTGACcttcctgtttgtttttttaatttttctttgttttcagtcC TCTCCAGCCCCTCAGAAAGCCCCACCTAAGAAACGTGAAGAACCACAAcc caaaaaagaacaaagtGAGGAACCAAGACGGCGAAACATTGCCCCAGATA ACCATCAAATTTTCATCGGAAACTTACCGACCAGTATTACGGAAAAGGAC GTTCGCGACCACTTTGGAGGTACCCAATTATACTTTACATCCATAAGTAT TATTCTATTTACTTATTGAAAATCTTTAGAGAATGAGAGTCTATTTATGT TGTTCCCGCTGGAACTGATATGCACAAAAATGGCTCATGATAAATCGATA TCAAATTATAATCTTTTTGTCTTTTAGAATTCGGGAACATCATTGAGATT CGACTTAATGCTAAGGTAACATCGTTTAattgattttttctattgtttta tagtCACTATTTTCGTTTTGtattttgaagtattttaaATACCAGGAGTT TTAATAATCAATCTTTTAATATTATTTCTAGAATTTTGGATTTATTGCTT TTGACGGACCCGATGCACCTTCGAAGATCTTAACTAAGGCAAAGGTCAAA ATGGAGGTAACAAAGTGACTTAAAGAGTATCACTTATgagtaaaatttca tttttacccTCTTGTGGGGTTAGGATGGAAGTACTAACCTGGTCACCTAA TGCTTATTGTATAGCCTTTAGACTGGTCCCTTCCCCCGCTAAGGATTATN TCTTGTGGGGTTGGGATGGAAGTACTAACCTGGTCACCTAATGCTTATTG TATAGCCTTTAGACTGGTCCCTTCCCCCGCTAAGGATTATTGGTCCTAGT GGTCCTAGGTATCTGTGCCACAAGCAAGCGAAGTTCGCAGTTAAGGGTAG GCAGGTGGTCGAAGACTCTTTGAAATCAGTTAAAAGACCATTCTACAGTC TTAGGTAACTTATATTCACGTCAATTGCTCAGCAAAAATACAACGCTGAT TTCCTGTCGTTTCAGAGTATCGTGATACATGGAAACACTATTAACATTGA GGTGAAGCGTAGTGGCGGGGCTGGGCGTGAAAGAACTAATGAACGAGGTG GAGGCGGTGGTTTCCGTCGCGACCGTGGAAGTGACAAGGAAAGGCGTGGC GGCGGAGACAGAGGCGGGGATCGATCggattttaataaaaacaaaaataa cggACAATTTAACAACAACAGATCAAGCGGTGGAGGTGGTAAGAACTCTT CTTTTGGTAGCGGACAAAAATCTCGAAATAATGATGGCGGAAAATTTAAC GATGACAACAAAGGACAAAGGGAACAAAAACGCGGAGAATTTAATAAACA AAATCGACGATAGGAAATTTTTggttgtaaagaaattttggatAGAGAAG GTTTATTGGAAAAATTGAGCTTCAGTTTTCTACAGGACCAGCGAAAGGAT AGAAAGATATTAGTGCCAATATTGGAATAAGTTCTTTATTGTCAAATTGC GTTTCTGTTTGTAATATTTTTAGCCTCCtcaggatttttttttcaaatat ttttatcagaACCGGTCATCTATAACTTATCAagatattgtaatttttaa gtttttattttttgtttccgTTTGAGCTGTCTCGTTAGGTTTTTTACAaa gcaatttctttttcaaaatgataacCAATGATATTGATGGCTTTTTATGa tagaattcttccctttaactAGTTGACTTTCTGTATTCTTCCAAAAGGTT GATTACCAAATCTTCAAAGGTTTTCTGAGAGAACAAAGTTTGACATTTTG ATTGGAAGAAAcgatattgaatattttttttcatttcttacaattaatta ttttttattttgtgttctCAAAAATAAGGGGAGATATATTACAccgggaa tttttttcaaaataaatgaataaattgaaaatatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009756XLOC_009756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017422-exon-sc0000267-1491911889:354206..354350TCONS_00017422-exon-sc0000267-1491911889:354206..354350Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1510915933:354206..354350TCONS_00017422-exon-sc0000267-1510915933:354206..354350Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1575043694:354206..354350TCONS_00017422-exon-sc0000267-1575043694:354206..354350Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1491911889:366980..367086TCONS_00017422-exon-sc0000267-1491911889:366980..367086Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1510915933:366980..367086TCONS_00017422-exon-sc0000267-1510915933:366980..367086Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1575043694:366980..367086TCONS_00017422-exon-sc0000267-1575043694:366980..367086Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1491911889:367299..367380TCONS_00017422-exon-sc0000267-1491911889:367299..367380Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1510915933:367299..367380TCONS_00017422-exon-sc0000267-1510915933:367299..367380Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1575043694:367299..367380TCONS_00017422-exon-sc0000267-1575043694:367299..367380Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1491911889:369210..369383TCONS_00017422-exon-sc0000267-1491911889:369210..369383Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1510915933:369210..369383TCONS_00017422-exon-sc0000267-1510915933:369210..369383Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1575043694:369210..369383TCONS_00017422-exon-sc0000267-1575043694:369210..369383Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1491911889:369657..369753TCONS_00017422-exon-sc0000267-1491911889:369657..369753Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1510915933:369657..369753TCONS_00017422-exon-sc0000267-1510915933:369657..369753Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1575043694:369657..369753TCONS_00017422-exon-sc0000267-1575043694:369657..369753Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1491911889:369965..370118TCONS_00017422-exon-sc0000267-1491911889:369965..370118Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1510915933:369965..370118TCONS_00017422-exon-sc0000267-1510915933:369965..370118Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1575043694:369965..370118TCONS_00017422-exon-sc0000267-1575043694:369965..370118Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1491911889:370375..370450TCONS_00017422-exon-sc0000267-1491911889:370375..370450Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1510915933:370375..370450TCONS_00017422-exon-sc0000267-1510915933:370375..370450Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1575043694:370375..370450TCONS_00017422-exon-sc0000267-1575043694:370375..370450Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1491911889:370701..370890TCONS_00017422-exon-sc0000267-1491911889:370701..370890Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1510915933:370701..370890TCONS_00017422-exon-sc0000267-1510915933:370701..370890Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1575043694:370701..370890TCONS_00017422-exon-sc0000267-1575043694:370701..370890Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1491911889:371072..371163TCONS_00017422-exon-sc0000267-1491911889:371072..371163Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1510915933:371072..371163TCONS_00017422-exon-sc0000267-1510915933:371072..371163Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1575043694:371072..371163TCONS_00017422-exon-sc0000267-1575043694:371072..371163Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1491911889:371403..371574TCONS_00017422-exon-sc0000267-1491911889:371403..371574Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1510915933:371403..371574TCONS_00017422-exon-sc0000267-1510915933:371403..371574Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1575043694:371403..371574TCONS_00017422-exon-sc0000267-1575043694:371403..371574Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1491911889:371733..371770TCONS_00017422-exon-sc0000267-1491911889:371733..371770Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1510915933:371733..371770TCONS_00017422-exon-sc0000267-1510915933:371733..371770Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1575043694:371733..371770TCONS_00017422-exon-sc0000267-1575043694:371733..371770Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1491911889:371887..371961TCONS_00017422-exon-sc0000267-1491911889:371887..371961Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1510915933:371887..371961TCONS_00017422-exon-sc0000267-1510915933:371887..371961Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1575043694:371887..371961TCONS_00017422-exon-sc0000267-1575043694:371887..371961Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1491911889:372371..373290TCONS_00017422-exon-sc0000267-1491911889:372371..373290Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1510915933:372371..373290TCONS_00017422-exon-sc0000267-1510915933:372371..373290Clytia hemisphaericaexon
TCONS_00017422-exon-sc0000267-1575043694:372371..373290TCONS_00017422-exon-sc0000267-1575043694:372371..373290Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000267supercontigsc0000267:354206..373290 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
257.518 258.063 138.705 144.259 121.264 93.5617 147.844 162.732 113.73 116.11 201.734 152.153 255.813 282.43 153.748 171.518 85.6894 111.148 102.483 94.3234 154.683 163.943 179.587 189.28 205.032 233.633 150.569 191.591 159.6 166.706
Blast
BLAST of TCONS_00017422 vs. Swiss-Prot (Human)
Match: G3BP2 (Ras GTPase-activating protein-binding protein 2 OS=Homo sapiens GN=G3BP2 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.836e-32
Identity = 69/135 (51.11%), Postives = 88/135 (65.19%), Query Frame = 2
Query:  155 MVMAQYTNTQYVAHEFVRQYYTILHKDPTQLHRFYTKESRLTHGVSPNAKSDEQPVCGQEAIYEKISQLNFKNCFTKIRSVDSHPTLAGGVVIQVNGELANSGMQYRKFMQTFVLAQQE--PKKYHVVNDIFRYQ 553
            MVM +  +   V  EFVRQYYT+L+K P  LHRFY + S   HG    +   ++ V GQ  I+ K+  LNF  C TKIR VD+H TL+ GVV+QV G L+NSG   RKFMQTFVLA +   P K++V ND+FRY+
Sbjct:    1 MVMEK-PSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFRYE 134          
The following BLAST results are available for this feature:
BLAST of TCONS_00017422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
G3BP21.836e-3251.11Ras GTPase-activating protein-binding protein 2 OS... [more]
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