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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017374 ID=TCONS_00017374|Name=TCONS_00017374|organism=Clytia hemisphaerica|type=transcript|length=1852bp
ATAAAATAAAGTACAAGCTGGATGAATGATAATTGATTTGGTTTCTATTT
GATTGTTCCACCGAAATCCAATGTCATTTGATGTGGAATAAATATACACC
AAGGATGttttagaAACAAGAAATTTAATGATGGACTTCCACATTTTACC
GAACGAACTTTTAGAAATGGTTATATCTTACCTCGATAAGAAAACTACCA
AAAATCTGAACCTTGCTTCAAAAAGAATGTACGAGCTGACTATGGAGAGA
CTTTGGTGCAAACCTACTTACAAAGACCCTAAAAGCTTGTCTTTCCTGAA
ACAAATTTCGCATTTTCCCATTCGCGAGCTTCGAATTCAAGATTTTGAAT
GCGAATGGGAAGATATCGTTGAGACTGTACCTAATCTCAAACTTTTGCAT
ATAGATTGCGATAGAAACAAGTACTGGAGTCCGAAGAGTCTCTTGCGGTT
GAAAACTCCCCTTGTTNATTGCGATAGAAACAAGTGCTGGAGTCCGAAGA
GTCTCTTACGGTTGAAAACTCCCCTTGTGGTTCATACAAGGGCCCTGGAA
ATCCGTTCAGATGCAGAGTTTGAGCCGCTGCTAGAAGTTGTCGAGGCGGG
CTATATAACCAAATTAATTGTCAACCACGATAAAATGATGCGACAATGGT
CTGTTGAACTCCTTCGAAAGTTGGTCGGTAAAGTTCATGTTTCCGAAATA
AACACACCTTGCTTTAGATTCACGAGAAAAAATGTTGAAGAGTTTTGCGA
GATCATTTCATCTCTGAAGAATTGTCTGGTTTGTTTTCCACTGAAGAAGC
GGACCGAAGATCATGATCATGACGAAGATGAAATTAGCGCCGAGGGGGAT
AGATTTCGTGCTTACAAATTCACAAGCGACGATATTGAAACTTTTGCTCG
ATATGATATCAAGATTTCTTACATGTCAAGTAGTAtgttaaaataccaaa
aagaccTTTCAAATTTAGTGGATTTTGTGCCGGCGTTGAGACGGTTGCTT
TATCTTagatgttttgaatttcaagagAGTGGCTTAAAGTTGGATCACAG
AACGTTTGAGCATTTTGTTGACATTCCCATCCGAAGCATCAAAACGAACC
TACTGAAGATGAACAAAGACAATGTCGGCGACTTCGTGGACGCACTCTCT
AAGATAAAAACActtcaacatatacacatgGTTTGGAATGGCTTTAAATT
GACACCGGAAGATTTTGCACTCTTTAAAAATCTACCTGTAAAAAAGATAC
GATTTTTTGCATTGGATTTGACGAGGGAAAATGTTCCAAAATTTCGACAA
ATTATGAGTGAGATGAAAATCGAAAGACTTGGCGCcatgacaaatgaaaa
aaagaaaactttaggAATTCGGTTCCATCAATTTGGGCCTGGTTATTGGT
CAATATAACAAGAAAGATGTGctttagactagagtctacttctggttGTA
CCTTGctttctgatatttttttatggcgctgagtccagtgatGTAGATTA
GGAGCAATTGACGAGATCTCCATTCTGAAAGGAAATACCAAAATTCCAAA
CagcaaaaaaactacttggagttgaaaatataattaaaagtGGGAAACAA
ACAtgaataacagatttgcaatcccttattttcaaatgaaaacattgCTT
CGTCCtattttaccttccaaaaacaattaaaagcaTATCGGGCTTTACCA
GAAAGTATTTGAATATGGGGATATAGAATAcaacattgtgacttttgacc
ccctgacagcaggtctaaccccttGGACAAGCACCAGCTGACTCCCCGTA
ATTCAAAATTTcactcaaacagagcaaaattacccccaaacagagcaagt
tt Run BLAST on NCBI protein sequence of TCONS_00017374-protein >TCONS_00017374-protein ID=TCONS_00017374-protein|Name=TCONS_00017374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=426bp
MMDFHILPNELLEMVISYLDKKTTKNLNLASKRMYELTMERLWCKPTYKD
PKSLSFLKQISHFPIRELRIQDFECEWEDIVETVPNLKLLHIDCDRNKYW
SPKSLLRLKTPLVXCDRNKCWSPKSLLRLKTPLVVHTRALEIRSDAEFEP
LLEVVEAGYITKLIVNHDKMMRQWSVELLRKLVGKVHVSEINTPCFRFTR
KNVEEFCEIISSLKNCLVCFPLKKRTEDHDHDEDEISAEGDRFRAYKFTS
DDIETFARYDIKISYMSSSMLKYQKDLSNLVDFVPALRRLLYLRCFEFQE
SGLKLDHRTFEHFVDIPIRSIKTNLLKMNKDNVGDFVDALSKIKTLQHIH
MVWNGFKLTPEDFALFKNLPVKKIRFFALDLTRENVPKFRQIMSEMKIER
LGAMTNEKKKTLGIRFHQFGPGYWSI Run BLAST on NCBI transcript from alignment at sc0000266:348750..351615+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017374 ID=TCONS_00017374|Name=TCONS_00017374|organism=Clytia hemisphaerica|type=transcript|length=2866bp|location=Sequence derived from alignment at sc0000266:348750..351615+ (Clytia hemisphaerica)
ATAAAATAAAGTACAAGCTGGATGAATGATAATTGATTTGGTTTCTATTT
GATTGTTCCACCGAAATCCAATGTCATTTGATGTGGAATAAATATACACC
AAGGATGGTAAGGATTTTTGTTATTGACATATGGATCAGGtgtaagaaaa
caaagaaattttcctCCTCTGATTCCGAGCTGTAGTTCTCTTGCGGTAAT
TTGTCACTGCAAGACATACAAACTCTTTTGATAAGTCATTCAGAAATTAT
TTACATAATAATTATATGAAATTAAATAAACACTACCCTTTTGGTTTTCT
CCAAAAAGATTGGAACACGTTACTTGAGGAGTCTGTGAATAACAACAgga
aactattttcaaaatgaaatcacTGCAACATTAACACATTCTTTGGAATG
GCTTCAACGCTAGTCCTGAAGAATTTGCCGCTCATCAAAATCCTTTTAGT
GAAAAAGATTGATTTTTAACAGCTTCGAAGttttatagtctaagacaaat
cactatctaaaaAATAAAGCCAAAGCCCGAAGAAAAATCGGGAACggttt
tttttgctgaaaatagTTTCAGACGGTAGAGTTAAACGGTCTTAGACTTT
GTAAAATTGTTATCGTCCGTTTGCTACAAACTCTAGTGCCGCTTTCTTCG
CGACTGTTATTAATGCCATGTTTGATTATTTCTGGCTTTTGATATCTCTT
AACTGTACGATAGCACCGTCTGATTTTGACGAATGCACGAGGAGAAATTT
TGGAACTATTTAAAATTTGATCCAGTGGAATCGATTGCCTACTTAAAAAA
GACAAGagatagatttttttattccatgaGAGCGTTTTATTAATGTCAGG
ATCAATTTTTGAAACGAGAGATTCTAATCTCTCATCATAACGACAACTTA
ACAACAATAACTGTTTAGTTGTTGTTCGCTGTTATGATTTACTTGTcagt
ttttttctctctttatttTTAATGTAAGAGTGTGGCTTTTCTGATGATAC
GGCAATTTTAAAGCTTATTTCTATCCACAACTGATTAACTTGCGTTTTTA
TGTGCTAAAATACCTTTTAAGCAAGTTTTTTCTCGCTTTTAACGTTTACA
ATTAGTCagatttttctttagttttagaAACAAGAAATTTAATGATGGAC
TTCCACATTTTACCGAACGAACTTTTAGAAATGGTTATATCTTACCTCGA
TAAGAAAACTACCAAAAATCTGAACCTTGCTTCAAAAAGAATGTACGAGC
TGACTATGGAGAGACTTTGGTGCAAACCTACTTACAAAGACCCTAAAAGC
TTGTCTTTCCTGAAACAAATTTCGCATTTTCCCATTCGCGAGCTTCGAAT
TCAAGATTTTGAATGCGAATGGGAAGATATCGTTGAGACTGTACCTAATC
TCAAACTTTTGCATATAGATTGCGATAGAAACAAGTACTGGAGTCCGAAG
AGTCTCTTGCGGTTGAAAACTCCCCTTGTTNATTGCGATAGAAACAAGTG
CTGGAGTCCGAAGAGTCTCTTACGGTTGAAAACTCCCCTTGTGGTTCATA
CAAGGGCCCTGGAAATCCGTTCAGATGCAGAGTTTGAGCCGCTGCTAGAA
GTTGTCGAGGCGGGCTATATAACCAAATTAATTGTCAACCACGATAAAAT
GATGCGACAATGGTCTGTTGAACTCCTTCGAAAGTTGGTCGGTAAAGTTC
ATGTTTCCGAAATAAACACACCTTGCTTTAGATTCACGAGAAAAAATGTT
GAAGAGTTTTGCGAGATCATTTCATCTCTGAAGAATTGTCTGGTTTGTTT
TCCACTGAAGAAGCGGACCGAAGATCATGATCATGACGAAGATGAAATTA
GCGCCGAGGGGGATAGATTTCGTGCTTACAAATTCACAAGCGACGATATT
GAAACTTTTGCTCGATATGATATCAAGATTTCTTACATGTCAAGTAGTAt
gttaaaataccaaaaagaccTTTCAAATTTAGTGGATTTTGTGCCGGCGT
TGAGACGGTTGCTTTATCTTagatgttttgaatttcaagagAGTGGCTTA
AAGTTGGATCACAGAACGTTTGAGCATTTTGTTGACATTCCCATCCGAAG
CATCAAAACGAACCTACTGAAGATGAACAAAGACAATGTCGGCGACTTCG
TGGACGCACTCTCTAAGATAAAAACActtcaacatatacacatgGTTTGG
AATGGCTTTAAATTGACACCGGAAGATTTTGCACTCTTTAAAAATCTACC
TGTAAAAAAGATACGATTTTTTGCATTGGATTTGACGAGGGAAAATGTTC
CAAAATTTCGACAAATTATGAGTGAGATGAAAATCGAAAGACTTGGCGCc
atgacaaatgaaaaaaagaaaactttaggAATTCGGTTCCATCAATTTGG
GCCTGGTTATTGGTCAATATAACAAGAAAGATGTGctttagactagagtc
tacttctggttGTACCTTGctttctgatatttttttatggcgctgagtcc
agtgatGTAGATTAGGAGCAATTGACGAGATCTCCATTCTGAAAGGAAAT
ACCAAAATTCCAAACagcaaaaaaactacttggagttgaaaatataatta
aaagtGGGAAACAAACAtgaataacagatttgcaatcccttattttcaaa
tgaaaacattgCTTCGTCCtattttaccttccaaaaacaattaaaagcaT
ATCGGGCTTTACCAGAAAGTATTTGAATATGGGGATATAGAATAcaacat
tgtgacttttgaccccctgacagcaggtctaaccccttGGACAAGCACCA
GCTGACTCCCCGTAATTCAAAATTTcactcaaacagagcaaaattacccc
caaacagagcaagttt Coding sequence (CDS) from alignment at sc0000266:348750..351615+ >TCONS_00017374 ID=TCONS_00017374|Name=TCONS_00017374|organism=Clytia hemisphaerica|type=CDS|length=1281bp|location=Sequence derived from alignment at sc0000266:348750..351615+ (Clytia hemisphaerica)
ATGATGGACTTCCACATTTTACCGAACGAACTTTTAGAAATGGTTATATC
TTACCTCGATAAGAAAACTACCAAAAATCTGAACCTTGCTTCAAAAAGAA
TGTACGAGCTGACTATGGAGAGACTTTGGTGCAAACCTACTTACAAAGAC
CCTAAAAGCTTGTCTTTCCTGAAACAAATTTCGCATTTTCCCATTCGCGA
GCTTCGAATTCAAGATTTTGAATGCGAATGGGAAGATATCGTTGAGACTG
TACCTAATCTCAAACTTTTGCATATAGATTGCGATAGAAACAAGTACTGG
AGTCCGAAGAGTCTCTTGCGGTTGAAAACTCCCCTTGTTNATTGCGATAG
AAACAAGTGCTGGAGTCCGAAGAGTCTCTTACGGTTGAAAACTCCCCTTG
TGGTTCATACAAGGGCCCTGGAAATCCGTTCAGATGCAGAGTTTGAGCCG
CTGCTAGAAGTTGTCGAGGCGGGCTATATAACCAAATTAATTGTCAACCA
CGATAAAATGATGCGACAATGGTCTGTTGAACTCCTTCGAAAGTTGGTCG
GTAAAGTTCATGTTTCCGAAATAAACACACCTTGCTTTAGATTCACGAGA
AAAAATGTTGAAGAGTTTTGCGAGATCATTTCATCTCTGAAGAATTGTCT
GGTTTGTTTTCCACTGAAGAAGCGGACCGAAGATCATGATCATGACGAAG
ATGAAATTAGCGCCGAGGGGGATAGATTTCGTGCTTACAAATTCACAAGC
GACGATATTGAAACTTTTGCTCGATATGATATCAAGATTTCTTACATGTC
AAGTAGTAtgttaaaataccaaaaagaccTTTCAAATTTAGTGGATTTTG
TGCCGGCGTTGAGACGGTTGCTTTATCTTagatgttttgaatttcaagag
AGTGGCTTAAAGTTGGATCACAGAACGTTTGAGCATTTTGTTGACATTCC
CATCCGAAGCATCAAAACGAACCTACTGAAGATGAACAAAGACAATGTCG
GCGACTTCGTGGACGCACTCTCTAAGATAAAAACActtcaacatatacac
atgGTTTGGAATGGCTTTAAATTGACACCGGAAGATTTTGCACTCTTTAA
AAATCTACCTGTAAAAAAGATACGATTTTTTGCATTGGATTTGACGAGGG
AAAATGTTCCAAAATTTCGACAAATTATGAGTGAGATGAAAATCGAAAGA
CTTGGCGCcatgacaaatgaaaaaaagaaaactttaggAATTCGGTTCCA
TCAATTTGGGCCTGGTTATTGGTCAATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017374-exon-sc0000266-1491911889:348750..348856 | TCONS_00017374-exon-sc0000266-1491911889:348750..348856 | Clytia hemisphaerica | exon |
| TCONS_00017374-exon-sc0000266-1510915933:348750..348856 | TCONS_00017374-exon-sc0000266-1510915933:348750..348856 | Clytia hemisphaerica | exon |
| TCONS_00017374-exon-sc0000266-1575043694:348750..348856 | TCONS_00017374-exon-sc0000266-1575043694:348750..348856 | Clytia hemisphaerica | exon |
| TCONS_00017374-exon-sc0000266-1491911889:349871..351615 | TCONS_00017374-exon-sc0000266-1491911889:349871..351615 | Clytia hemisphaerica | exon |
| TCONS_00017374-exon-sc0000266-1510915933:349871..351615 | TCONS_00017374-exon-sc0000266-1510915933:349871..351615 | Clytia hemisphaerica | exon |
| TCONS_00017374-exon-sc0000266-1575043694:349871..351615 | TCONS_00017374-exon-sc0000266-1575043694:349871..351615 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000266 | supercontig | sc0000266:348750..351615 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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