TCONS_00017373 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017373
Unique NameTCONS_00017373
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017373 ID=TCONS_00017373|Name=TCONS_00017373|organism=Clytia hemisphaerica|type=transcript|length=939bp
GATTTTTTGTAATGATCGGTAAGagaataatattttattttaaaacaata
TTGTCAAATAAGACAATTCCATAATGAGTTTTGACGTATTACCAAATGAG
ATATTGAAACTTATTGTATCATTCCTGTCTAAGGAGGATGCCAAAAAGGT
CTCCCTCACTTCAAAAAAAATGTACGATTTGACTTTGGACAGGATTTGGT
ACaaaattaaaccaaaatatcatcTCTTTGGTGATAAAATAGGGATCAGT
GAAGAGATCCGAACTGTTGGTTTTTTCAAGAAACTTTCGCATCTACCCAT
ACGTGAAATAAGTATATATTATTTCCCGAAATGGTCATGTAAAAAAGTTC
ATAAAGCTTTCCCACTTCTCAAACTGTTACATTTTGACCGATTAGAATCG
AGCACGGTGTTAGGATTCAATACCAAATACTTCAGTCAATTTAAAATGCC
CATGGTAATCTATACACATATGCTAGAAGTTAGCAATCAAAGTCATTTTG
ATGAGCTTTTACAAGTGATGAAAACTTGTAACGTTGTAAAATTTGTTATC
AATCATTTTTGTGAATATCGAGATACATATCAGATTAGATGGTCGCCTGA
TCAACTGGAAACGATCATCAATGAATAAGTACCAAAGATAACAATTTCTT
TAGACTGTCTTGCATTAACTCGAAAGAATGCAaaacaattttcgaaaatt
atttcaagaaaTAAAAATTGTAAGGTTTATAAAAGAACAGCGAAACACTA
CCGTTATTTATTTTATGCAAGGGATATTGAATTGATGGCTAGATATGATA
TCAAGATCACCAAGCTATATAGGTTTTTACCCGAGGATTTAGCCATGTTC
AAAGGTTTACCCGTGAAATACATTTATTTGGCAGCTTTGGATTTAACGAA
GAAGAACATTCCAGATTTTGGTCGAATTATCATGGAAAT
Run BLAST on NCBI

transcript from alignment at sc0000266:337504..345072+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017373 ID=TCONS_00017373|Name=TCONS_00017373|organism=Clytia hemisphaerica|type=transcript|length=7569bp|location=Sequence derived from alignment at sc0000266:337504..345072+ (Clytia hemisphaerica)
GATTTTTTGTAATGATCGGTAAGagaataatattttattttaaaacaata
TTGTCAAATAAGACAATTCCATAATGAGTTTTGACGTATTACCAAATGAG
ATATTGAAACTTATTGTATCATTCCTGTCTAAGGAGGATGCCAAAAAGGT
CTCCCTCACTTCAAAAAAAATGTACGATTTGACTTTGGACAGGATTTGGT
ACaaaattaaaccaaaatatcatcTCTTTGGTGATAAAATAGGGATCAGT
GAAGAGATCCGAACTGTTGGTTTTTTCAAGAAACTTTCGCATCTACCCAT
ACGTGAAATAAGTATATATTATTTCCCGAAATGGTCATGTAAAAAAGTTC
ATAAAGCTTTCCCACTTCTCAAACTGTTACATTTTGACCGATTAGAATCG
AGCACGGTGTTAGGATTCAATACCAAATACTTCAGTCAATTTAAAATGCC
CATGGTAATCTATACACATATGCTAGAAGTTAGCAATCAAAGTCATTTTG
ATGAGCTTTTACAAGTGATGAAAACTTGTAACGTTGTAAAATTTGTTATC
AATCATTTTTGTGAATATCGAGATACATATCAGATTAGATGGTCGCCTGT
TCAACTGGAAACGATCATTAATGCAGTACCAAAGATAACAATTTCTTTAG
ACTGTCTTGCATTAACTCGAAAGAATGcaaaacaattttacaaaagtATT
TCAAGAAATAAAAATTGTAAGGTTTATAAAAGAACAGCGAAACACTACCG
TTATTTATTTTCTGCAAGGGATATTGGATTGATGGCTAGATATGATATCA
AGATCACCAAGCTATATAGCGGCTATCTTAAGATACCCTCTGTCGAAAAT
GACCAGTCGTTGCAAAAGTTTGCTGAAGCGCTCACCAAATTAAGTCACCT
CAAATCTTTCGAATTCCACTATGAGCATTTACCAACTACAATCGACTATT
TTACCAATGTTCCAATAACGTCCCTGTCCACTCACGCATTTGAAATATCG
GGAAAAGATAAGATTGAAAAAGTAGTGCAGACATTGTCTAAAATGAAGTC
TCTTCGTCGTTTTTCTATTGGTTCGAGTGACTATAAGTTTTTACCCGAGG
ACTTAGCCATGTTTAAAGGTTTACCCGTGAAATACATTTATTTGGCAGCT
TTGGATTTAACGAAGAAGAACATTCCAGATTTTCGTCGAATTATCATGGA
AATGAATGTAGAACACATTGGGCTTTCCCCTTATTTTTCTGATGGTAGCA
GACGTCATAGTAAGATGGAAGAACTTGGCATTGAAATGAAAACACACGGG
CTTGGTGGTATCTACCAAACCATATAGTACAGTTTGCCTTTCATTTATGA
GCTTAAAACTCATACTGGTGTTCTCCTATTATGACTTAAGGTTAGTCGTT
GAAAGGTGGAATTGATAAAAGAAGCGAACTCATTTTTCATTACGATTTTA
TGtaaaggttggaaattttactCCATTTAATCTCGTTGTGCCCCTTTTTT
GGGAAGGTTCTCCATCTTTCAATAAAATGTTAAACAGGGACGGGGCTCTT
CAAAATTTGATCTCCTTGGTCTCCTTGGTGGACCTAGAtacaagaataaa
caatgtttttcttttttttttaattgtcattcaccaatgttttacagacc
ctcttgataattaaaagtttttaatcgtgaaggATAAATACAACAGCAGA
ATCGTTGGccaagaggaaatccaaatttcacaagtttgtaattaaaaaag
ttaaatttcatatcaaattttaatgtctaggtacagagatagaacaaggc
tttatCAAATGTGCGGTATCCAGCTTCGCTATTAAATATCCCTGGTTTGA
GTATATAGTATATATTTCCAATCCAATGTTCTTGAAAATATCAGGTCAGC
TTTGGCTTAAACAGAATATATCGCTGATCGAGTTATCGATATTTTACCGC
CAAATAACTCTCTTGAGACTTATACTTTAATGGGGATAAACGTTCGTGgg
gattcaaaaatttcgcggggacttaatttcgcgtgtggcactattgggta
ggcaatattttcacgattttgtgacttctactttcaaatcatgcatattg
gttgttgaaatacacattatttgcgcttctttgatgcaagtaaccattga
aatagtatttatttgacatattttgagtattGTTTAGatatatttcgcgg
atgaggcccttccaaacacccaaatccgcggaatccgcgaaattcaatcc
ccgcgaaagtttaccccattaaggtatgtgttcacctttttccgattttt
tgtcaaaaaaaaaattttcagtcaaagtggaagaaaagttactggatttc
attttggtaaaatcgcgatcttaaaatcttcttttgattcagagttataa
ccatttaaatttcaaaacaaagttcgtcttatgatggattatttactcaa
ataattgtctatttcggaaacaacaaagacaaaagagagaattcagctga
tttATTCTCaactctattgaatagtaatatttttgattttcacgttcacg
caaggtTTTTCAAtttacgcattcacgcattgttttctattttcacgcat
tcacgcaactgGCGGAGAGCCtcattcacgtattcacgcaaaccgctagG
GGGAGGAGGCAGTGAGGTAGATCATGTCACTTCACTatgacaaaatcaaa
aagtcttttctgaaaattttacgCTACACTAATCTACGCACCACTATTTT
CTACGGATTTATTCACTTCTTCTATTTCCGAACGTATTTTtattattggc
ccagcgctagcgaagGGGCCTTTCAAGAGGAACTTTCCGTGTGTCTGTCC
TGTCCTGTCTGTCCGCAGTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGATGCTCATACTTATTGACCTAAAAGCTTTAAAAGACTATTTTGAAAG
TTGCATTTTTtacactgattttgcttgagggTTTTCATCGATGTTTTCTC
ATTACTGTTCAAAATGTAGGTTCAAACACCAACCAGATTATTACAGGTAT
GTTCTCTTATGTAATGTTTATTATTCTCTTGCTATCTCCTTGATGATTAA
GAGGAATCAGACATTTTATCAGAATAATTATAACTTTTAACGTGTGCGAT
GAAAAAATGTGTGTTCAGGCTTTTATATTCGAcaagaaaatttattcaaa
cagCAAGATGTTGACTAGACTAGCCTCTATTTGTACTATTGTTGGacatt
ttgatactttttctgcataaaattacatggtgaaattttatatttgaaaC
AAGCTTTTTTTCTAGGAGTCTCGATCATGCTCAGTTATTTTAGTTTCAGT
ACATACCAGACGACATAATTAATCAAAATGTTCAAAGGTTGCTGCACtga
aattgtgagtattcgattaagttccacttaaagggacataaaagcatagc
tgtcaactctcccgcattgagtgggagactcccgcatgtcaacgatttct
cccgcgtgaagaaaattctgccaaatctcccgcatttttgggattttctc
ccgcatctcccgcatttccaaaatttttctgattttggaaaatccaAACG
GCGAAATTTCTGGATTTTGAAAGATCGGAACGAAAAATTCCCcaatttcc
cgaaaaaaatttccaataaaatcggattttactagaaaatttccccgatt
tcccgattttccgattttgaaaaatcggattatcggggaaaatttttccg
acttggagctctcccgcatttttgtgaGGCGAAGTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCAGACACCATCTTGAAATAGCCTC
ATTTTGGGAAAAACACTTACTGAATTATGATCTGCATCTGAAAGTGAGTc
actgtacaaaatttcagccaataactcaaaattgttcagtttttatggac
atttttatataaaaattttgcatttttgagtGCTGCTGAGGCTGCAGCCG
CTGTGGTTgcaggaaaattttttcgatgctggtttctttttaattttact
ttttatcatttgtttttgctCCCTTTAGTTAGAGCTTTAGCACAATCATG
TTTGTTAAAGATTtctcaaaagttttatttttacatagatAAGTTTTCCC
GTTTCAtgtcagacacatgtttcatatcagtttGTTATATCGTGCTAATA
TTNNtaaaattgatgagtaagcaaactttatcactcttatttagaaacaa
aacttttaatgctgggccttcatgcccttgggcttcttgtttttttaaat
ttgaatttcgatttttaaagaTCAGTAGAGGCCTTTTGTAAATATTATAT
GAATGAAATAAATTGGTTTTAATTATTTCGTCGCACGTTCTTATATTTCT
GAAATCATATATTCATAACATTATATATTGGATTCTCTATTTGTAATCGT
CCTCGTTTGAGAAAACTTGGTGACTCGATTGAATCTAGAATATTTTGGAA
AGTTACTTGATGTTGTTGCAACATATAAATACTTTTTTGATTATTCTTGG
CATCATAGCTAATCACTTAAATACTTTGGCATCATAACTAATCACTGATA
ATTTCTCGTttagaaaaaatacaaaaaaatagaataaagaGAACAATTCC
TTGCTGTTTGTTTGTTGCCATACAAAACGATGTCAATAGAAGAAGCTTGA
TGGTTGATTGATGGTTTGATTGATGGTTTGATTGATGCTAACGAGTTTTG
AAGTATTACCAAATGaaatattaagcagatattcaataggtaaaaaaagt
tggttattgagatttattaacctgaggtgatgtaatattcaacgaggcga
agccgagttgaatatacatcaccgagggttaataaatccaataaccaacg
aaaacctattgaatatatatgttttattatatacctaaggcaaaaacaaa
acattaattatGTTAATAGTTGAGCGTTTCacttaaaacactcccataat
cgaacgttcgaatgtttttcttttttaatgattttcttaattactttgaa
tcataaaatttgttcatgaaattgacgatcgatttattttaatgaatttc
tttgatgcAACAAGAgcgataaaaaaaatcaaactttgaaagcaaaagtt
gaaaaaaaaattctaccgtggtataatagccatggtatatcaggaattat
tcaatggctgtttttgcctacaggtatataataatgaaACTTATCGTATC
ATTCCTCTCTAAGGGGGATGCGAAAAAGGTCTCCCTCACTTCAAAAAGGA
TGTACGATTTGACTTTGGATAGGATTTGGTACAAAATTTAACcaaaataa
catttttgtgGAGATAAAAAAGGAATAAGTGAAGAAATCCGAACTGTTGG
ATTTTTCAAGAAACTTTCGCATCTACCCATACGTGAAATAAGTATATATT
ATTACCCGAAATGGTCTCGTAAAAAAGTTTATAAAGCTTTCCCACTTCTC
AAACTGTTACATTTTGACCAATTAGAATCAAACACGGTGTTAGGATTCAA
TACCAAATACTTTATTACATTTAAAATGCCCATGGTAATCTACACCCATA
TGCTAGAAGTTAGCAATCAAAGTcatttttatgagcttttaCAAGTGATG
AAAACTTGTAACGTTGTAAAACTTGTTATCAATCATTTTTTGGATTATCG
AGATACATATCAGATTAGATGGTCGCCTGATCAACTGGAAACGATCATCA
ATGAATAAGTACCAAAGATAACAATTTCTTTAGACTGTCTTGCATTAACT
CGAAAGAATGCAaaacaattttcgaaaattatttcaagaaaTAAAAATTG
TAAGGTTTATAAAAGAACAGCGAAACACTACCGTTATTTATTTTATGCAA
GGGATATTGAATTGATGGCTAGATATGATATCAAGATCACCAAGCTATAT
AGGTTTTTACCCGAGGATTTAGCCATGTTCAAAGGTTTACCCGTGAAATA
CATTTATTTGGCAGCTTTGGATTTAACGAAGAAGAACATTCCAGATTTTG
GTCGAATTATCATGGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009725XLOC_009725Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017373-exon-sc0000266-1491911889:337504..338079TCONS_00017373-exon-sc0000266-1491911889:337504..338079Clytia hemisphaericaexon
TCONS_00017373-exon-sc0000266-1510915933:337504..338079TCONS_00017373-exon-sc0000266-1510915933:337504..338079Clytia hemisphaericaexon
TCONS_00017373-exon-sc0000266-1575043694:337504..338079TCONS_00017373-exon-sc0000266-1575043694:337504..338079Clytia hemisphaericaexon
TCONS_00017373-exon-sc0000266-1491911889:344710..345072TCONS_00017373-exon-sc0000266-1491911889:344710..345072Clytia hemisphaericaexon
TCONS_00017373-exon-sc0000266-1510915933:344710..345072TCONS_00017373-exon-sc0000266-1510915933:344710..345072Clytia hemisphaericaexon
TCONS_00017373-exon-sc0000266-1575043694:344710..345072TCONS_00017373-exon-sc0000266-1575043694:344710..345072Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:337504..345072 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.99527	1.50171	1.35302	1.33465	0.787055	0.850228	0.737306	1.26999	0.499295	0.959914	1.21901	0.616253	0.436301	0.641058	0.49764	0.315422	0.343504	0.432375	0.165082	0.728658	1.26804	0.327953	1.24256	1.05903	0.52755	0.284365	0	0.762834	0.23445	0.185175
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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