TCONS_00017368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017368
Unique NameTCONS_00017368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017368 ID=TCONS_00017368|Name=TCONS_00017368|organism=Clytia hemisphaerica|type=transcript|length=357bp
AAGGCATTCTCGGGTTCAATAATTGTCAAATTCCACAATTGTGATATTCT
TGGCGtatttatgtaatttttcatCATGCATAGTCTTATGAGAGGAATcg
tgtaaattattttgaaatttttcttgggTATGATTTATAACAATGAAGTT
TGACAATCGGGAGATTCAAAGTAtcgcagattcacgcattcacttAATCA
CGAAGTAGATTTTCATGTTCACCAAAGTTTGTTTTTTCAATTTACGCATT
CACACATTTTGAAGAGGCCCATTCACGTACTCACGCAAACCGCTAGGGGG
GAGGGGGCAGTGAGGTAGATCATGTCACTTCACTatgacaaaatcaaaaa
aaatttt
Run BLAST on NCBI

transcript from alignment at sc0000266:336282..336901+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017368 ID=TCONS_00017368|Name=TCONS_00017368|organism=Clytia hemisphaerica|type=transcript|length=620bp|location=Sequence derived from alignment at sc0000266:336282..336901+ (Clytia hemisphaerica)
AAGGCATTCTCGGGTTCAATAATTGTCAAATTCCACAATTGTGATATTCT
TGGCGtatttatgtaatttttcatCATGCATAGTCTTATGAGAGGAATcg
tgtaaattattttgaaatttttcttgggTATGATTTATAACAATGAAGGT
AACGTGTTGATTACGCGGGGTACAGTAAGGATTATTTATTTTAAAGTCTT
GCATATTAGTGgggagcccccccccccccNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCGACCCTCAAT
TGATACAATCAGCCATTACTTTTCGGAATATCgggaaatattttggaaaa
gtCGGAGAAAGTTTGACAATCGGGAGATTCAAAGTAtcgcagattcacgc
attcacttAATCACGAAGTAGATTTTCATGTTCACCAAAGTTTGTTTTTT
CAATTTACGCATTCACACATTTTGAAGAGGCCCATTCACGTACTCACGCA
AACCGCTAGGGGGGAGGGGGCAGTGAGGTAGATCATGTCACTTCACTatg
acaaaatcaaaaaaaatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009724XLOC_009724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017368-exon-sc0000266-1491911889:336282..336429TCONS_00017368-exon-sc0000266-1491911889:336282..336429Clytia hemisphaericaexon
TCONS_00017368-exon-sc0000266-1510915933:336282..336429TCONS_00017368-exon-sc0000266-1510915933:336282..336429Clytia hemisphaericaexon
TCONS_00017368-exon-sc0000266-1575043694:336282..336429TCONS_00017368-exon-sc0000266-1575043694:336282..336429Clytia hemisphaericaexon
TCONS_00017368-exon-sc0000266-1491911889:336693..336901TCONS_00017368-exon-sc0000266-1491911889:336693..336901Clytia hemisphaericaexon
TCONS_00017368-exon-sc0000266-1510915933:336693..336901TCONS_00017368-exon-sc0000266-1510915933:336693..336901Clytia hemisphaericaexon
TCONS_00017368-exon-sc0000266-1575043694:336693..336901TCONS_00017368-exon-sc0000266-1575043694:336693..336901Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000266supercontigsc0000266:336282..336901 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.719143	0.935037	7.05684	11.1526	2.26288	0.510902	1.54095	2.30819	0.606008	2.50213	2.91435	0.159648	1.11599	1.15896	0.952824	0.876451	0.899763	1.66001	1.27411	2.66653	0.695308	0.678294	0.274852	1.49928	0.772112	1.37818	0	1.05238	0.532129	0.271077
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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