TCONS_00017339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017339
Unique NameTCONS_00017339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017339 ID=TCONS_00017339|Name=TCONS_00017339|organism=Clytia hemisphaerica|type=transcript|length=414bp
GTTAGTTCGTTAATTTTCTTCCTATTTtgtctttgccgacctaaacaagc
tacttaggacggctttgccgacctaaaatgacctctaggtcggcaaaatt
ttgccgtaGTCGGCACTGCAGTGCCGAtatgattttgtctgaattcacaG
GGCTGTTATTAgatattatgaaatttttttatagatACGCTCGTTTTATA
gttaaattattaaaattagGTGAAAAAATTGATTATTATTTGTATTAATT
TGAATATCTAGTTTGACAccatttattttttgaaacacATTATTAAAGGA
TTGGATTGTGCCTTTTTAccaattttagttttttctttgaTTGCCCCTTT
TGAGGTCTATATTATCTATGTGTCTGTTTGTCTCTTCGGTACGATCGATG
TCAATTGAATATAG
Run BLAST on NCBI

transcript from alignment at sc0000264:359554..359967

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017339 ID=TCONS_00017339|Name=TCONS_00017339|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at sc0000264:359554..359967 (Clytia hemisphaerica)
CTATATTCAATTGACATCGATCGTACCGAAGAGACAAACAGACACATAGA
TAATATAGACCTCAAAAGGGGCAAtcaaagaaaaaactaaaattggTAAA
AAGGCACAATCCAATCCTTTAATAATgtgtttcaaaaaataaatggTGTC
AAACTAGATATTCAAATTAATACAAATAATAATCAATTTTTTCACctaat
tttaataatttaacTATAAAACGAGCGTatctataaaaaaatttcataat
atcTAATAACAGCCCtgtgaattcagacaaaatcataTCGGCACTGCAGT
GCCGACtacggcaaaattttgccgacctagaggtcattttaggtcggcaa
agccgtcctaagtagcttgtttaggtcggcaaagacaAAATAGGAAGAAA
ATTAACGAACTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009711XLOC_009711Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017339-exon-sc0000264-1491911889:359554..359967TCONS_00017339-exon-sc0000264-1491911889:359554..359967Clytia hemisphaericaexon
TCONS_00017339-exon-sc0000264-1510915933:359554..359967TCONS_00017339-exon-sc0000264-1510915933:359554..359967Clytia hemisphaericaexon
TCONS_00017339-exon-sc0000264-1575043694:359554..359967TCONS_00017339-exon-sc0000264-1575043694:359554..359967Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:359554..359967 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.65774	3.07234	6.12014	9.15811	7.647	8.10292	7.44074	11.9611	8.23337	14.1812	17.0077	9.67045	9.41984	9.70388	3.69551	3.62093	3.32083	3.38608	1.11496	3.74706	1.83725	1.26369	1.659	2.71858	12.303	13.677	4.2649	4.25077	3.71326	4.00448
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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