TCONS_00017338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017338
Unique NameTCONS_00017338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017338 ID=TCONS_00017338|Name=TCONS_00017338|organism=Clytia hemisphaerica|type=transcript|length=313bp
gaaaatatcaaaatatctaCCGGATCTGGCAACagtaaaaactttctttt
cGAAAAACAGGTTTAGTtgcatttgagggtttatagtaatacACCTAAAT
GCAacaaaaaaatcaggaaaatctaATGAGCCAATTGAGAGAAAAATTGG
TATCGAAAAAACAAACTACTTTataaatttcgcggggattcAATTTTGCG
GGTGGCGATTGTCCGTCTGATGAAGGAAGAAATCATGGAGACACTGAACA
AAAAGATCACCTCGATCGAGAATCATCTTCATCACCTTCAGCAGACGCAA
ACCTCTCAAATNN
Run BLAST on NCBI

transcript from alignment at sc0000264:289972..290284

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017338 ID=TCONS_00017338|Name=TCONS_00017338|organism=Clytia hemisphaerica|type=transcript|length=313bp|location=Sequence derived from alignment at sc0000264:289972..290284 (Clytia hemisphaerica)
NNATTTGAGAGGTTTGCGTCTGCTGAAGGTGATGAAGATGATTCTCGATC
GAGGTGATCTTTTTGTTCAGTGTCTCCATGATTTCTTCCTTCATCAGACG
GACAATCGCCACCCGCAAAATTgaatccccgcgaaatttatAAAGTAGTT
TGTTTTTTCGATACCAATTTTTCTCTCAATTGGCTCATtagattttcctg
atttttttgtTGCATTTAGGTgtattactataaaccctcaaatgcaACTA
AACCTGTTTTTCgaaaagaaagtttttactGTTGCCAGATCCGGtagata
ttttgatattttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009710XLOC_009710Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017338-exon-sc0000264-1491911889:289972..290284TCONS_00017338-exon-sc0000264-1491911889:289972..290284Clytia hemisphaericaexon
TCONS_00017338-exon-sc0000264-1510915933:289972..290284TCONS_00017338-exon-sc0000264-1510915933:289972..290284Clytia hemisphaericaexon
TCONS_00017338-exon-sc0000264-1575043694:289972..290284TCONS_00017338-exon-sc0000264-1575043694:289972..290284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:289972..290284 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.727556	0.813722	1.23838	1.72642	1.49062	0.363418	1.31534	0.41047	0.574759	0	0.345509	2.49837	1.67961	0.471085	0.387296	0.831256	1.02404	0.608875	0	0.379354	0.811567	0.964976	0.391018	0	0.366149	0.980337	1.40286	0	0.378517	0.385649
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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