TCONS_00017337 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017337
Unique NameTCONS_00017337
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length218

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017337 ID=TCONS_00017337|Name=TCONS_00017337|organism=Clytia hemisphaerica|type=transcript|length=218bp
NCGATGCCAACTGTACCGATGATCAGGCAAATTCCTCACCAAGCAAACTT
CAATCCAATTCAGTTCCAATAATCAACAACTTTGCTTTTTTTAATGTACA
AGGACTGTACCCTCAAAATGTTCCAAGCAAAGTTCCTTTTATCGAAAATA
ACATATGTCATAAAAGTTTACTGTTTGTTGGCCTATCAGAAACATGGCTC
AACAACCATAAAGATGCA
Run BLAST on NCBI

transcript from alignment at sc0000264:289621..289838

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017337 ID=TCONS_00017337|Name=TCONS_00017337|organism=Clytia hemisphaerica|type=transcript|length=218bp|location=Sequence derived from alignment at sc0000264:289621..289838 (Clytia hemisphaerica)
TGCATCTTTATGGTTGTTGAGCCATGTTTCTGATAGGCCAACAAACAGTA
AACTTTTATGACATATGTTATTTTCGATAAAAGGAACTTTGCTTGGAACA
TTTTGAGGGTACAGTCCTTGTACATTAAAAAAAGCAAAGTTGTTGATTAT
TGGAACTGAATTGGATTGAAGTTTGCTTGGTGAGGAATTTGCCTGATCAT
CGGTACAGTTGGCATCGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009709XLOC_009709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017337-exon-sc0000264-1491911889:289621..289838TCONS_00017337-exon-sc0000264-1491911889:289621..289838Clytia hemisphaericaexon
TCONS_00017337-exon-sc0000264-1510915933:289621..289838TCONS_00017337-exon-sc0000264-1510915933:289621..289838Clytia hemisphaericaexon
TCONS_00017337-exon-sc0000264-1575043694:289621..289838TCONS_00017337-exon-sc0000264-1575043694:289621..289838Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:289621..289838 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.97251	5.81717	6.68449	4.69423	15.0523	13.0902	6.25742	14.9462	3.43183	4.9033	9.05012	11.0123	6.24936	8.25461	10.6313	8.31173	7.26513	2.94568	6.17732	0	0	1.80544	1.46317	3.65639	13.7011	14.1446	0.440804	0	0	4.09515
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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