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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017286 ID=TCONS_00017286|Name=TCONS_00017286|organism=Clytia hemisphaerica|type=transcript|length=2361bpRun BLAST on NCBI protein sequence of TCONS_00017286-protein >TCONS_00017286-protein ID=TCONS_00017286-protein|Name=TCONS_00017286-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp MATIEANRTRKADEMSGAQDTTNNVDQELQKKLKMDTCDGGKEKARLKSQRun BLAST on NCBI transcript from alignment at sc0000264:326442..350098+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017286 ID=TCONS_00017286|Name=TCONS_00017286|organism=Clytia hemisphaerica|type=transcript|length=23657bp|location=Sequence derived from alignment at sc0000264:326442..350098+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000264:326442..350098+ >TCONS_00017286 ID=TCONS_00017286|Name=TCONS_00017286|organism=Clytia hemisphaerica|type=CDS|length=16992bp|location=Sequence derived from alignment at sc0000264:326442..350098+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017286 vs. Swiss-Prot (Human)
Match: NADK (NAD kinase OS=Homo sapiens GN=NADK PE=1 SV=1) HSP 1 Score: 315.464 bits (807), Expect = 3.632e-98 Identity = 174/382 (45.55%), Postives = 247/382 (64.66%), Query Frame = 1
Query: 418 RGRFLFGPSPNHSFGPKASLSSGTPEPYDGEWRDIGMIDPSNQHLEWHSPPQNVLIIKKHMDQDVTKQFKEMVKWLMTEKVMTIIVEENVLCEELVAFDEDFQTYSQKIKPFKAENGNARPSVDLIVCLGGDGTLIHVSSLFQSQCPPVIAFHMGSLGFLTPFSTSSYKEDIQAVMDANLGLSLRSRLKCQVRR------------MSESG---------VDEVESEFLVLNEVVVDRGTSSSVTHVEIYCNGRFLTTLLGDGLIISTPTGSTAYSMSAGASLVHPSVPGIIVTPICPHSLSFRPIVLPAGVELKIIVSTESRNFTPMCSFDGRNPKEMNKTKYLRVTTSIYPIPCISHEDHLGDWFNSLGECLHWNRRETK 1500
R R L GP P +FGPKA + P+ + + DP++Q L W+ P++VL+IKK D + + FKE+ LM E M + VE+ VL + +A DE F +K F+ + + +D I+CLGGDGTL++ SSLFQ PPV+AFH+GSLGFLTPFS +++ + V++ N + LRSRLK +V + + E+G V + ++ VLNEVV+DRG SS +++V++Y +G +TT+ GDG+I+STPTGSTAY+ +AGAS++HP+VP I++TPICPHSLSFRPIV+PAGVELKI++S E+RN T SFDGR +E+ + +TTS YP+P I D + DWF SL +CLHWN R+ +
Sbjct: 61 RTRSLHGPCPVTTFGPKACVLQ-NPQTI------MHIQDPASQRLTWNKSPKSVLVIKKMRDASLLQPFKELCTHLMEEN-MIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIICLGGDGTLLYASSLFQGSVPPVMAFHLGSLGFLTPFSFENFQSQVTQVIEGNAAVVLRSRLKVRVVKELRGKKTAVHNGLGENGSQAAGLDMDVGKQAMQYQVLNEVVIDRGPSSYLSNVDVYLDGHLITTVQGDGVIVSTPTGSTAYAAAAGASMIHPNVPAIMITPICPHSLSFRPIVVPAGVELKIMLSPEARN-TAWVSFDGRKRQEIRHGDSISITTSCYPLPSICVRDPVSDWFESLAQCLHWNVRKKQ 433 The following BLAST results are available for this feature:
BLAST of TCONS_00017286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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