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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017280 ID=TCONS_00017280|Name=TCONS_00017280|organism=Clytia hemisphaerica|type=transcript|length=967bp
GTCTGTTTATTAGCTTGCAACCATTCTCTTAGTTTTGGAGGACCTTCGGT
TGGGacaattttacctcaaaatttataataaagagttgacacaatatctt
tgtttcaaactcagagtttcagGCTCTATTTACTTATTGAGCACTCTACG
ATGATAGGAGAAGATATACACCCTCTACAGCATACCTCAAAATTTATACT
TATAATAAGCTAACCAATATTTGAGGCCCAAACTTACACAATACGTCTCC
GATCCATCTTGTCTAAACCCTTCTCTATATATTATACAAATTAGAAGTTA
AACAAAAACTTACGAATTTTCATTCTACAAAATGTCTCTTCCAAGATTAT
TGACTTTAGCAGCAATGATATGTCTTTGGATGATCACGGTGGTTGGTGCA
CGAGTGATGAGGGACTATCAAGGAAACATGGAATATAAACGAATGGACGC
GATGAATGCACAAGAGTTATGTAGAATGAAACAACAATATCATTTACCAA
TGGAAGGCGTTCTCTCTGAAATGTTCAGCATGTATTCACCTGGTGATATC
AAATTCATTTACAATTCCTGTTGAGGAAACCGTTGGCAGAAGACGTTAGA
ACAATGTCCATCGGGCGTCCATAAGGTCGTAGAATGGCTTGTACGTTTGG
AAGGCCGCAATTAATTTTTCCGTCGATTTTGTAGTTTTTTAATACGTATT
ATTTTTTCGTGTTCTAGCATTAAATTATTATAAACACTAGATAAACAACG
AactagattttcattttatcaaTGTCCAGGGTAAtgacaatattttttca
taattcaGCCTTGAATAAATCATCGATCCACCAAGATCTTTATACCAAGG
CAAATTTTGACGTGAACACAAGTACAAACAAATagcaaactttttaaaaa
tggcattaTTAATGATTTTTCTAAATCAGAGACCTTCAaaccgccatgac
agttgtcctttgtgGAC Run BLAST on NCBI transcript from alignment at sc0000264:171128..173415+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017280 ID=TCONS_00017280|Name=TCONS_00017280|organism=Clytia hemisphaerica|type=transcript|length=2288bp|location=Sequence derived from alignment at sc0000264:171128..173415+ (Clytia hemisphaerica)
GTCTGTTTATTAGCTTGCAACCATTCTCTTAGTTTTGGAGGACCTTCGGT
TGGGacaattttacctcaaaatttataataaagagttgacacaatatctt
tgtttcaaactcagagtttcagGCTCTATTTACTTATTGAGCACTCTACG
ATGATAGGAGAAGATATACACCCTCTACAGCATACCTCAAAATTTATACT
TATAATAAGCTAACCAATATTTGAGGCCCAAACTTACACAATACGTCTCC
GATCCATCTTGTCTAAACCCTTCTCTATATATTATACAAATTAGAAGTTA
AACAAAAACTTACGAATTTTCATTCTACAAAATGTCTCTTCCAAGATTAT
TGACTTTAGCAGCAATGATATGTCTTTGGATGATCACGGTGGTTGGTGCA
CGAGTGATGAGGGACTATCAAGGAAACATGGAATGtaagttttttaatat
tttttcatatttatatTTCCCCTTTTGCTCGACTTTACACCACCTTctta
cagacccactgggactcTTTCATACTGGAAAAATCatcggccaaaatatc
gtccctatGGAATATTATACTGCAATATTTGTACCACTGAAATTAAACAT
CATCAAATTAAacatcaaataaaccaatccttccccattgcaaaatattt
ttcccaCCCTCACCAacttttctgacttgaaaacaatggaattttaaTAT
TTAATCTAATATATTATCGGCCTTCTCCCAGAACAGAAATTTCCCGACAG
ACTTTTCCCCGTTCGATATTTTTCCTAGCAATAGATAATTCCTCGGCTGG
GCTTTGGACTTTTTTCTAACAGATTTGTCGCCGATTTGACAACTGGTCGT
AATACTACATACTACATGTTAAAGTTTTCTCGACCGAGAAATCATCCGGT
CGGAGTAGGTCCCTCTGAAGAGATCTGTCGGGGGAACCATCCAATCACCT
TCTATGATGNGGGCGGAGTAGGTCCCTCTGAAGAGATCTGTCGGGGAAAC
CATCCAATCACCTTCTATGatgttttctcaaaacaaaacaagagaCCGAA
TCTTTTTAACCGAAACACACGTAAAAACACCATACTATAAAAATCGATGG
AGAGTGGAAGGAGTATTACTTGTCTCTACTTAATTCTATTTTATAATCGG
CAGTAAAAGATATGGAAGGAAACTCCGGCTAGTGACTTCGAACTCAGATT
ATTAtaatgtcttcatttttcatgAAATGGTCAATGCAATGCAGTCATAA
ACTAAcaaatctgatttttttttcccGCCTAAAATTATTCTCTTAAGCTT
AATAGAGAGATGAGAGCGAGAGATGAATGGATGACCGATGAACGGAACAG
GCTCTATCCAGGACAGCAATCATACCCTAGGATAGGGAAATCATCACTGC
ACCTACCTGACTCTACCAACTCGTGCTCGCGATACACAGAGCTGATGGTG
CATAGTTACTATACTCGAACGACTTGGGAGGACAATACATCCTCGCATGG
TCGAACATGACAAGTATTAGCAACCACACCTCAGAGTCAGACGTATCTCC
CTACACTCTCGTATATAgcatggtacccaattcccctcacatggtatggg
ttgacccaggcgaatgttcattcacttgccaagtaaaTCACAGCACCGAG
TAGAAATAGAATCCCGACCTCCTGCACGGAGGTCGAGACTAATAACCACT
AAACTACTGCGCCTAACTTAAGCCTAATATATTTAATTGTTCTCATGCAT
TTTAGATAAACGAATGGACGCGATGAATGCACAAGAGTTATGTAGAATGA
AACAACAATATCATTTACCAATGGAAGGCGTTCTCTCTGAAATGTTCAGC
ATGTATTCACCTGGTGATATCAAATTCATTTACAATTCCTGTTGAGGAAA
CCGTTGGCAGAAGACGTTAGAACAATGTCCATCGGGCGTCCATAAGGTCG
TAGAATGGCTTGTACGTTTGGAAGGCCGCAATTAATTTTTCCGTCGATTT
TGTAGTTTTTTAATACGTATTATTTTTTCGTGTTCTAGCATTAAATTATT
ATAAACACTAGATAAACAACGAactagattttcattttatcaaTGTCCAG
GGTAAtgacaatattttttcataattcaGCCTTGAATAAATCATCGATCC
ACCAAGATCTTTATACCAAGGCAAATTTTGACGTGAACACAAGTACAAAC
AAATagcaaactttttaaaaatggcattaTTAATGATTTTTCTAAATCAG
AGACCTTCAaaccgccatgacagttgtcctttgtgGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017280-exon-sc0000264-1491911889:171128..171561 | TCONS_00017280-exon-sc0000264-1491911889:171128..171561 | Clytia hemisphaerica | exon |
| TCONS_00017280-exon-sc0000264-1510915933:171128..171561 | TCONS_00017280-exon-sc0000264-1510915933:171128..171561 | Clytia hemisphaerica | exon |
| TCONS_00017280-exon-sc0000264-1575043694:171128..171561 | TCONS_00017280-exon-sc0000264-1575043694:171128..171561 | Clytia hemisphaerica | exon |
| TCONS_00017280-exon-sc0000264-1491911889:172883..173415 | TCONS_00017280-exon-sc0000264-1491911889:172883..173415 | Clytia hemisphaerica | exon |
| TCONS_00017280-exon-sc0000264-1510915933:172883..173415 | TCONS_00017280-exon-sc0000264-1510915933:172883..173415 | Clytia hemisphaerica | exon |
| TCONS_00017280-exon-sc0000264-1575043694:172883..173415 | TCONS_00017280-exon-sc0000264-1575043694:172883..173415 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000264 | supercontig | sc0000264:171128..173415 + |
Blast
The following BLAST results are available for this feature:
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