TCONS_00017276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017276
Unique NameTCONS_00017276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017276 ID=TCONS_00017276|Name=TCONS_00017276|organism=Clytia hemisphaerica|type=transcript|length=2384bp
CAATGATATATCTACCTAGGAGACCATACGTAATAAGACGGCATAAAAAA
CAAACGGAAAAGCCAACTAATCCTGACGTGCCTGATCCTTCCGCCCCTGA
ACCCGCTCCTGAACCAGTCCCTGAACCCGCTCCTGAACCAGCCCCTGAAC
TTGCCCCTGAACCTGCCCCTGAAATCGCCCCTGAAACCGCCCCTGAACCC
GCCCCTAATACCGGCCGTGGACTGTCGATCATCCTAATTGGTCCTGTGGA
ACCAACAAATCCTGATGATAACCTAGAGGATCCATCCGCCCCTGGACTGC
CGACCGGCCCTGATGCACCAATTGGTCCTGTGGAACCAACAAACCCTGAT
GCACCAATTGATCCTGTGGAACCAACAAATCCTGATGCACCAATTGATCC
TGTGGAACCAATAAACCCTGATGTACCGATTGATCCTGTGGAACCAACAA
ACCCTGATGCACCAATTGATCCTGTGGAACCAACAAATCCTGATGCACCA
ATTGATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAAGATCCATC
CGCCCCTGGACTGCCGACCGGCCCTGATGCACCAATTGATCCTGTGGAAC
CAATAAACCCTGATGATAACCTAGAGGATCCATCTGTCCCTGGACTGCCA
ACCGGCCCTGATGCACCAATTGATCCTGTGGAACCAATAAACCCTGATGT
ACCGATTGATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAGGATC
CATCTGTCCCTGGACTGCCAACCGGCCCTGATGCACCAATTGATCCTGTG
GAACCAATAAACCCTGATGTACCGATTGATCCTGTGGAACCAATAAACCC
TGATGTTCCAATTGATCCTGTGGAACCAATAAACCCTGATGCACCAATTG
ATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAAGATCCATCCGCC
CCTGGACTGCCAACCGGCCCTGATGTTCCAATTGGTCCTGTGGAACCAAC
AAATCCTGATGTACCAATTGATCCTGTGGAACCAATAAACCCTGATGATA
ACCTAGAGGATCCAACCGTCCCTGAACTGCCGACCGGCCCTGATGTACCA
ATTAGTCCTGTGGAACCAACAAATCCTGATGTACCAATTGATCCTGTGGA
ACCAATAAACCCTGATGATAACCTAGAGGATCCAACCGTCCCTGAACTGC
CGACCGGCCCTGATGTACCAATTAGTCCTGTGGAACCAATAAACCCTGAT
GATAACCTAGAGGATCCATCCGTCCCTGGACTGCCGACCGGCCCTGATGT
TCCAATTGATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAGGATC
CATCCGCCCCTGGACTGCCGACCGGCCCTGATGTACCAATTAGTCCTGTG
GAACCAACAAATCCTGATGTACCAATTGATCCTGTGGAACCAACAAACCC
TGATGATAACCTAGAGGATCCATCCGACCCTGGACTGCCGACCGGCCCTG
ATGTTCCAATTGATCCTGTGGAACCAACAAACCCTGATGATAACCTAGAG
GATCCATCCGACCCTGGACTGCCGACCGGCCCTGATGTTCCAATTGATCC
TGTGGAACCAATAAATCCTGATGAGCCTAACCTAGAGGATCCATTCGATG
AGCCTGACTGTGATAGCCTATCCCATCCAGAACCATCAGGAGAGAGACCA
GCCGATCTACTGATAGATGAGTGTTTTGAAAGACATAACATGTACCGATT
TAGACATACCGACAACCTTCTTTCATGGGACCATATGTTGCAATCTTCTG
CTCAATTATATGCTGAACAACTAGCACAAACGGAGAGATTTGAGCACAGT
GAACAACCAGGCATAGgagaaaatttgtattttgcTTTTAATCCTGTTGG
CGTGAAGAGGGAAGGAAACTGTAATCGAGCACTAGATTTATGGTACGATG
AGATTGAAAATTACGACTTTGGATCTGGGACATCTCTTAATGGAAAGGTG
ATAGGACATTTTACACAAATGGTATGGGCGACCACAACAAAAATCGGTAT
AGGAATGGCAATCAATGGAGACGGCACTAAAATCTACGTCGTTGCTCAAT
ACTCACCTCCAGGAAATTTTATTGGTCAATACACTGAGCAAGTAAAACCA
TTACGATGCGCGATACCACTCCCAATATAAGTGGtttatttattatttga
aaaaaagtagtGGACAAAAATCAAGATCAATATAAATCTATATTAAATCA
GTTATCAAACATATAGATCACAAGAATCGAAACACAATATAATATCAAAC
AATATATTGATAATACATTAACTAAGTACCGGCAATatggtgtccgcaat
atattgttaGATCGATTTggaatattccaacaat
Run BLAST on NCBI

protein sequence of TCONS_00017276-protein

>TCONS_00017276-protein ID=TCONS_00017276-protein|Name=TCONS_00017276-protein|organism=Clytia hemisphaerica|type=polypeptide|length=725bp
MIYLPRRPYVIRRHKKQTEKPTNPDVPDPSAPEPAPEPVPEPAPEPAPEL
APEPAPEIAPETAPEPAPNTGRGLSIILIGPVEPTNPDDNLEDPSAPGLP
TGPDAPIGPVEPTNPDAPIDPVEPTNPDAPIDPVEPINPDVPIDPVEPTN
PDAPIDPVEPTNPDAPIDPVEPINPDDNLEDPSAPGLPTGPDAPIDPVEP
INPDDNLEDPSVPGLPTGPDAPIDPVEPINPDVPIDPVEPINPDDNLEDP
SVPGLPTGPDAPIDPVEPINPDVPIDPVEPINPDVPIDPVEPINPDAPID
PVEPINPDDNLEDPSAPGLPTGPDVPIGPVEPTNPDVPIDPVEPINPDDN
LEDPTVPELPTGPDVPISPVEPTNPDVPIDPVEPINPDDNLEDPTVPELP
TGPDVPISPVEPINPDDNLEDPSVPGLPTGPDVPIDPVEPINPDDNLEDP
SAPGLPTGPDVPISPVEPTNPDVPIDPVEPTNPDDNLEDPSDPGLPTGPD
VPIDPVEPTNPDDNLEDPSDPGLPTGPDVPIDPVEPINPDEPNLEDPFDE
PDCDSLSHPEPSGERPADLLIDECFERHNMYRFRHTDNLLSWDHMLQSSA
QLYAEQLAQTERFEHSEQPGIGENLYFAFNPVGVKREGNCNRALDLWYDE
IENYDFGSGTSLNGKVIGHFTQMVWATTTKIGIGMAINGDGTKIYVVAQY
SPPGNFIGQYTEQVKPLRCAIPLPI
Run BLAST on NCBI

transcript from alignment at sc0000264:109139..115786+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017276 ID=TCONS_00017276|Name=TCONS_00017276|organism=Clytia hemisphaerica|type=transcript|length=6648bp|location=Sequence derived from alignment at sc0000264:109139..115786+ (Clytia hemisphaerica)
CAATGATATATCTACCTAGGAGACCATACGTAATAAGACGGCATAAAAAA
CAAACGGAAAAGCCAACTAATCCTGACGTGCCTGATCCTTCCGCCCCTGA
ACCCGCTCCTGAACCAGTCCCTGAACCCGCTCCTGAACCAGCCCCTGAAC
TTGCCCCTGAACCTGCCCCTGAAATCGCCCCTGAAACCGCCCCTGAACCC
GCCCCTAATACCGGCCGTGGACTGTCGATCATCCTAATTGGTCCTGTGGA
ACCAACAAATCCTGATGATAACCTAGAGGATCCATCCGCCCCTGGACTGC
CGACCGGCCCTGATGCACCAATTGGTCCTGTGGAACCAACAAACCCTGAT
GCACCAATTGATCCTGTGGAACCAACAAATCCTGATGCACCAATTGATCC
TGTGGAACCAATAAACCCTGATGTACCGATTGATCCTGTGGAACCAACAA
ACCCTGATGCACCAATTGATCCTGTGGAACCAACAAATCCTGATGCACCA
ATTGATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAAGATCCATC
CGCCCCTGGACTGCCGACCGGCCCTGATGCACCAATTGATCCTGTGGAAC
CAATAAACCCTGATGATAACCTAGAGGATCCATCTGTCCCTGGACTGCCA
ACCGGCCCTGATGCACCAATTGATCCTGTGGAACCAATAAACCCTGATGT
ACCGATTGATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAGGATC
CATCTGTCCCTGGACTGCCAACCGGCCCTGATGCACCAATTGATCCTGTG
GAACCAATAAACCCTGATGTACCGATTGATCCTGTGGAACCAATAAACCC
TGATGTTCCAATTGATCCTGTGGAACCAATAAACCCTGATGCACCAATTG
ATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAAGATCCATCCGCC
CCTGGACTGCCAACCGGCCCTGATGTTCCAATTGGTCCTGTGGAACCAAC
AAATCCTGATGTACCAATTGATCCTGTGGAACCAATAAACCCTGATGATA
ACCTAGAGGATCCAACCGTCCCTGAACTGCCGACCGGCCCTGATGTACCA
ATTAGTCCTGTGGAACCAACAAATCCTGATGTACCAATTGATCCTGTGGA
ACCAATAAACCCTGATGATAACCTAGAGGATCCAACCGTCCCTGAACTGC
CGACCGGCCCTGATGTACCAATTAGTCCTGTGGAACCAATAAACCCTGAT
GATAACCTAGAGGATCCATCCGTCCCTGGACTGCCGACCGGCCCTGATGT
TCCAATTGATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAGGATC
CATCCGCCCCTGGACTGCCGACCGGCCCTGATGTACCAATTAGTCCTGTG
GAACCAACAAATCCTGATGTACCAATTGATCCTGTGGAACCAACAAACCC
TGATGATAACCTAGAGGATCCATCCGACCCTGGACTGCCGACCGGCCCTG
ATGTTCCAATTGATCCTGTGGAACCAACAAACCCTGATGATAACCTAGAG
GATCCATCCGACCCTGGACTGCCGACCGGCCCTGATGTTCCAATTGATCC
TGTGGAACCAATAAATCCTGATGAGCCTAACCTAGAGGATCCATTCGATG
AGCCTGACTGTGATAGCCTATCCCATCCAGAACCATCAGGAGAGAGACCA
GCCGATCTACTGATAGGTAATTTTCGTTTCAATATTCGTCACATCTCATG
AGACAGTAAGGATAGTATTTGCTACTACTATTTTTACTTTTAACATATAA
TAAGAGCACTAAAAAGGGTTTCGAGAAATTATTAATTACAACTAACCTAA
TTTAAAGAAGTGCTGTACAAATGCACAAAAATTATTTGGGACATTTTGAT
ACAGAAACCTCACTAATTTGGGCTTTCTCGAGACTAGTTTTCTCGAAAAT
ACCAATTTTCGTAAcacaaaatcttttttacaCGAATTGTTACTTGATTG
AAGCTAAgagattttcttcaaatgtTTTATAACCTttcttttgaaaacat
taagaacaagctagatgctgaatggacctacctgatgatgaaagttagat
agcaatgcgaggagaaaaagtcagaaaaatatcgtttagcgaaaatgcat
aacgcaataaattcatcattgattgttgatggggggagagggaagggttg
tagggaaaaattaatagaaagttctggtcgcaaNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacgg
acgaacggacgaacggacgaacggacgaacgaacgaacgaacagaggtta
atttataggacctacagcccaccggggtaggtccaaaaatcctAACAAAG
CTAAAATTGATATCACTAGTTTTAGTACCAATGtgctaaaatatttctaa
atttttgtctGGATGCCACTATTTTCGTATTTTAGTACCCTGAAGGATTT
TTCAGTTACTTCGTTACACTCGAGCAAAAAGGGTAGGTGGCTGCATAACA
ACAGCGTATGTTTGCGCTCTCAGGGCGGGCGTTATGATTGCAAAAGGGCG
CAAGACGTGCAATGAGTGGCAAAATTTAACTTCTCTTCGCAGAAATTGAG
AGCCCAGTTCCTGGTAGGGTTTCTTTTTTGAGAATATTCGATCCAACgga
gggtccatttttcaaacctcGGCGGAAAACCTCTGTCGATCGGCAACGGT
GGTTCCCTCCCTCTGACCCTCACTGACTCCATACGGACGTTTGAATATAA
GTTAAAAAACTTCGTGTCAGCTGATAGTCAGAGAGGCAATGTAAAACATC
TTCTGAAAAAATTACTCAATCTTGAGATATACCAATCGCACTTGTTTTGT
TCCTTTCGGAATTTTATGCACGATATTTATCCAAGTTATTTCTTCCATAA
TTTTGTTTCTAGATGAGTGTTTTGAAAGACATAACATGTACCGATTTAGA
CATACCGACAACCTTCTTTCATGGGACCATATGTTGCAATCTTCTGCTCA
ATTATATGCTGAACAACTAGCACAAACGGAGAGATTTGAGCACAGTGAAC
AACCAGGCATAGgagaaaatttgtattttgcTTTTAATCCTGTTGGCGTG
AAGAGGGAAGGAAACTGTAATCGAGCACTAGATTTATGGTaggtattgtt
ttttttgttttttttctcttctcttttatCACTCAAAAGAAAAGTgggta
taccttatcggggaaaaaatgtcgggggaaagtgacgaaaattttgaggg
ggtaaCGAAATTTTCCCACGACGAATTTTTTACCCCCAATATTTTATCAC
CCgtccaaaacttttacccgatttttttatccccgaccagaacttttact
cgattttttaaaccccaaccaaaatgaaaatctaaaaattttcacacctt
tagtaaccgaaattagtgctttaaacgtcgaattacaagatcttttttcg
agctaatgaaggaaaccatttcaattGGACAATTTATAGCTGGGTGAAAG
TAACTAAATAGTAAATTTGGtcagggaaaagtgacgaatttaaaattttg
gtcgggagaaaatgacgaaaatgcctctaggtgacgaaatttttccccga
cgaaaaaaaaaccgaccaaataaaactccgacatatTTTCCCCGATGAGT
TATATCGTTATGTTTACAATCCCTacagaaaacaaagaaaaaatctaaaa
actcCTTTTAAAAGCAGAACGTGTCCTAAATCTAAAGAGAATTAGTATGA
AAAATATCCACAGAGCTGCAGTCTGGATTACGGATACTGAAGATAAATAC
CAAAGGTGCTATCCTGTGCAAATATGGATTAAGGCAAGATGAGAGATGCT
AAAGAAAGGACTAGTAGAAGGGGCCAAGCTTGGgattccgtgacatcttt
tttacgacctagccattttaagtttatttcaaagaacagtatattacaag
atatttttgagagggagacGTGGATTAGGCctgggaaaactttttgtgac
caaaatagtgacgcaataggcaaaactgcaagggaaaataaggggtagaa
aaatagctgattttcaaaagttggTTGGTAtcatctgaaagagcatgaaa
ctctgagcaaaaaaatgtattacagcaactctctgactaaaacacatcaa
gaaatacagccgctttaagTCCAACTAAGCGTCAGTCTCTTAgtgtgatt
tgacgtcaaatcttgtcttgatcgtactgacgtcggtatcttttcttttc
attacgatttttaaatcttcagattcaggaatagttggtctaacagaaaa
tgtataacataccATAGTTTTTTTggctacatcaggcagaaatctatatt
ttgtacatgacaaatatgaaaaattcactatggtcagagcccttaaaagt
atcttttaaaaactccatctcatctggtaTATTTCTGTATATTCTATTTG
ATACAGGTACGATGAGATTGAAAATTACGACTTTGGATCTGGGACATCTC
TTAATGGAAAGGTGATAGGACATTTTACACAAATGGTATGGGCGACCACA
ACAAAAATCGGTATAGGAATGGCAATCAATGGAGACGGCACTAAAATCTA
CGTCGTTGCTCAATACTCACCTCCAGGAAATTTTATTGGTCAATACACTG
AGCAAGTAAAACCATTACGATGCGCGATACCACTCCCAATATAAGTGGtt
tatttattatttgaaaaaaagtagtGGACAAAAATCAAGATCAATATAAA
TCTATATTAAATCAGTTATCAAACATATAGATCACAAGAATCGAAACACA
ATATAATATCAAACAATATATTGATAATACATTAACTAAGTACCGGCAAT
atggtgtccgcaatatattgttaGATCGATTTggaatattccaacaat

Coding sequence (CDS) from alignment at sc0000264:109139..115786+

>TCONS_00017276 ID=TCONS_00017276|Name=TCONS_00017276|organism=Clytia hemisphaerica|type=CDS|length=6534bp|location=Sequence derived from alignment at sc0000264:109139..115786+ (Clytia hemisphaerica)
ATGATATATCTACCTAGGAGACCATACGTAATAAGACGGCATAAAAAACA
AACGGAAAAGCCAACTAATCCTGACGTGCCTGATCCTTCCGCCCCTGAAC
CCGCTCCTGAACCAGTCCCTGAACCCGCTCCTGAACCAGCCCCTGAACTT
GCCCCTGAACCTGCCCCTGAAATCGCCCCTGAAACCGCCCCTGAACCCGC
CCCTAATACCGGCCGTGGACTGTCGATCATCCTAATTGGTCCTGTGGAAC
CAACAAATCCTGATGATAACCTAGAGGATCCATCCGCCCCTGGACTGCCG
ACCGGCCCTGATGCACCAATTGGTCCTGTGGAACCAACAAACCCTGATGC
ACCAATTGATCCTGTGGAACCAACAAATCCTGATGCACCAATTGATCCTG
TGGAACCAATAAACCCTGATGTACCGATTGATCCTGTGGAACCAACAAAC
CCTGATGCACCAATTGATCCTGTGGAACCAACAAATCCTGATGCACCAAT
TGATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAAGATCCATCCG
CCCCTGGACTGCCGACCGGCCCTGATGCACCAATTGATCCTGTGGAACCA
ATAAACCCTGATGATAACCTAGAGGATCCATCTGTCCCTGGACTGCCAAC
CGGCCCTGATGCACCAATTGATCCTGTGGAACCAATAAACCCTGATGTAC
CGATTGATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAGGATCCA
TCTGTCCCTGGACTGCCAACCGGCCCTGATGCACCAATTGATCCTGTGGA
ACCAATAAACCCTGATGTACCGATTGATCCTGTGGAACCAATAAACCCTG
ATGTTCCAATTGATCCTGTGGAACCAATAAACCCTGATGCACCAATTGAT
CCTGTGGAACCAATAAACCCTGATGATAACCTAGAAGATCCATCCGCCCC
TGGACTGCCAACCGGCCCTGATGTTCCAATTGGTCCTGTGGAACCAACAA
ATCCTGATGTACCAATTGATCCTGTGGAACCAATAAACCCTGATGATAAC
CTAGAGGATCCAACCGTCCCTGAACTGCCGACCGGCCCTGATGTACCAAT
TAGTCCTGTGGAACCAACAAATCCTGATGTACCAATTGATCCTGTGGAAC
CAATAAACCCTGATGATAACCTAGAGGATCCAACCGTCCCTGAACTGCCG
ACCGGCCCTGATGTACCAATTAGTCCTGTGGAACCAATAAACCCTGATGA
TAACCTAGAGGATCCATCCGTCCCTGGACTGCCGACCGGCCCTGATGTTC
CAATTGATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAGGATCCA
TCCGCCCCTGGACTGCCGACCGGCCCTGATGTACCAATTAGTCCTGTGGA
ACCAACAAATCCTGATGTACCAATTGATCCTGTGGAACCAACAAACCCTG
ATGATAACCTAGAGGATCCATCCGACCCTGGACTGCCGACCGGCCCTGAT
GTTCCAATTGATCCTGTGGAACCAACAAACCCTGATGATAACCTAGAGGA
TCCATCCGACCCTGGACTGCCGACCGGCCCTGATGTTCCAATTGATCCTG
TGGAACCAATAAATCCTGATGAGCCTAACCTAGAGGATCCATTCGATGAG
CCTGACTGTGATAGCCTATCCCATCCAGAACCATCAGGAGAGAGACCAGC
CGATCTACTGATAGATGAGTGTTTTGAAAGACATAACATGTACCGATTTA
GACATACCGACAACCTTCTTTCATGGGACCATATGTTGCAATCTTCTGCT
CAATTATATGCTGAACAACTAGCACAAACGGAGAGATTTGAGCACAGTGA
ACAACCAGGCATAGgagaaaatttgtattttgcTTTTAATCCTGTTGGCG
TGAAGAGGGAAGGAAACTGTAATCGAGCACTAGATTTATGGTACGATGAG
ATTGAAAATTACGACTTTGGATCTGGGACATCTCTTAATGGAAAGGTGAT
AGGACATTTTACACAAATGGTATGGGCGACCACAACAAAAATCGGTATAG
GAATGGCAATCAATGGAGACGGCACTAAAATCTACGTCGTTGCTCAATAC
TCACCTCCAGGAAATTTTATTGGTCAATACACTGAGCAAGTAAAACCATT
ACGATGCGCGATACCACTCCCAATATAAATGATATATCTACCTAGGAGAC
CATACGTAATAAGACGGCATAAAAAACAAACGGAAAAGCCAACTAATCCT
GACGTGCCTGATCCTTCCGCCCCTGAACCCGCTCCTGAACCAGTCCCTGA
ACCCGCTCCTGAACCAGCCCCTGAACTTGCCCCTGAACCTGCCCCTGAAA
TCGCCCCTGAAACCGCCCCTGAACCCGCCCCTAATACCGGCCGTGGACTG
TCGATCATCCTAATTGGTCCTGTGGAACCAACAAATCCTGATGATAACCT
AGAGGATCCATCCGCCCCTGGACTGCCGACCGGCCCTGATGCACCAATTG
GTCCTGTGGAACCAACAAACCCTGATGCACCAATTGATCCTGTGGAACCA
ACAAATCCTGATGCACCAATTGATCCTGTGGAACCAATAAACCCTGATGT
ACCGATTGATCCTGTGGAACCAACAAACCCTGATGCACCAATTGATCCTG
TGGAACCAACAAATCCTGATGCACCAATTGATCCTGTGGAACCAATAAAC
CCTGATGATAACCTAGAAGATCCATCCGCCCCTGGACTGCCGACCGGCCC
TGATGCACCAATTGATCCTGTGGAACCAATAAACCCTGATGATAACCTAG
AGGATCCATCTGTCCCTGGACTGCCAACCGGCCCTGATGCACCAATTGAT
CCTGTGGAACCAATAAACCCTGATGTACCGATTGATCCTGTGGAACCAAT
AAACCCTGATGATAACCTAGAGGATCCATCTGTCCCTGGACTGCCAACCG
GCCCTGATGCACCAATTGATCCTGTGGAACCAATAAACCCTGATGTACCG
ATTGATCCTGTGGAACCAATAAACCCTGATGTTCCAATTGATCCTGTGGA
ACCAATAAACCCTGATGCACCAATTGATCCTGTGGAACCAATAAACCCTG
ATGATAACCTAGAAGATCCATCCGCCCCTGGACTGCCAACCGGCCCTGAT
GTTCCAATTGGTCCTGTGGAACCAACAAATCCTGATGTACCAATTGATCC
TGTGGAACCAATAAACCCTGATGATAACCTAGAGGATCCAACCGTCCCTG
AACTGCCGACCGGCCCTGATGTACCAATTAGTCCTGTGGAACCAACAAAT
CCTGATGTACCAATTGATCCTGTGGAACCAATAAACCCTGATGATAACCT
AGAGGATCCAACCGTCCCTGAACTGCCGACCGGCCCTGATGTACCAATTA
GTCCTGTGGAACCAATAAACCCTGATGATAACCTAGAGGATCCATCCGTC
CCTGGACTGCCGACCGGCCCTGATGTTCCAATTGATCCTGTGGAACCAAT
AAACCCTGATGATAACCTAGAGGATCCATCCGCCCCTGGACTGCCGACCG
GCCCTGATGTACCAATTAGTCCTGTGGAACCAACAAATCCTGATGTACCA
ATTGATCCTGTGGAACCAACAAACCCTGATGATAACCTAGAGGATCCATC
CGACCCTGGACTGCCGACCGGCCCTGATGTTCCAATTGATCCTGTGGAAC
CAACAAACCCTGATGATAACCTAGAGGATCCATCCGACCCTGGACTGCCG
ACCGGCCCTGATGTTCCAATTGATCCTGTGGAACCAATAAATCCTGATGA
GCCTAACCTAGAGGATCCATTCGATGAGCCTGACTGTGATAGCCTATCCC
ATCCAGAACCATCAGGAGAGAGACCAGCCGATCTACTGATAGATGAGTGT
TTTGAAAGACATAACATGTACCGATTTAGACATACCGACAACCTTCTTTC
ATGGGACCATATGTTGCAATCTTCTGCTCAATTATATGCTGAACAACTAG
CACAAACGGAGAGATTTGAGCACAGTGAACAACCAGGCATAGgagaaaat
ttgtattttgcTTTTAATCCTGTTGGCGTGAAGAGGGAAGGAAACTGTAA
TCGAGCACTAGATTTATGGTACGATGAGATTGAAAATTACGACTTTGGAT
CTGGGACATCTCTTAATGGAAAGGTGATAGGACATTTTACACAAATGGTA
TGGGCGACCACAACAAAAATCGGTATAGGAATGGCAATCAATGGAGACGG
CACTAAAATCTACGTCGTTGCTCAATACTCACCTCCAGGAAATTTTATTG
GTCAATACACTGAGCAAGTAAAACCATTACGATGCGCGATACCACTCCCA
ATATAAATGATATATCTACCTAGGAGACCATACGTAATAAGACGGCATAA
AAAACAAACGGAAAAGCCAACTAATCCTGACGTGCCTGATCCTTCCGCCC
CTGAACCCGCTCCTGAACCAGTCCCTGAACCCGCTCCTGAACCAGCCCCT
GAACTTGCCCCTGAACCTGCCCCTGAAATCGCCCCTGAAACCGCCCCTGA
ACCCGCCCCTAATACCGGCCGTGGACTGTCGATCATCCTAATTGGTCCTG
TGGAACCAACAAATCCTGATGATAACCTAGAGGATCCATCCGCCCCTGGA
CTGCCGACCGGCCCTGATGCACCAATTGGTCCTGTGGAACCAACAAACCC
TGATGCACCAATTGATCCTGTGGAACCAACAAATCCTGATGCACCAATTG
ATCCTGTGGAACCAATAAACCCTGATGTACCGATTGATCCTGTGGAACCA
ACAAACCCTGATGCACCAATTGATCCTGTGGAACCAACAAATCCTGATGC
ACCAATTGATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAAGATC
CATCCGCCCCTGGACTGCCGACCGGCCCTGATGCACCAATTGATCCTGTG
GAACCAATAAACCCTGATGATAACCTAGAGGATCCATCTGTCCCTGGACT
GCCAACCGGCCCTGATGCACCAATTGATCCTGTGGAACCAATAAACCCTG
ATGTACCGATTGATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAG
GATCCATCTGTCCCTGGACTGCCAACCGGCCCTGATGCACCAATTGATCC
TGTGGAACCAATAAACCCTGATGTACCGATTGATCCTGTGGAACCAATAA
ACCCTGATGTTCCAATTGATCCTGTGGAACCAATAAACCCTGATGCACCA
ATTGATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAAGATCCATC
CGCCCCTGGACTGCCAACCGGCCCTGATGTTCCAATTGGTCCTGTGGAAC
CAACAAATCCTGATGTACCAATTGATCCTGTGGAACCAATAAACCCTGAT
GATAACCTAGAGGATCCAACCGTCCCTGAACTGCCGACCGGCCCTGATGT
ACCAATTAGTCCTGTGGAACCAACAAATCCTGATGTACCAATTGATCCTG
TGGAACCAATAAACCCTGATGATAACCTAGAGGATCCAACCGTCCCTGAA
CTGCCGACCGGCCCTGATGTACCAATTAGTCCTGTGGAACCAATAAACCC
TGATGATAACCTAGAGGATCCATCCGTCCCTGGACTGCCGACCGGCCCTG
ATGTTCCAATTGATCCTGTGGAACCAATAAACCCTGATGATAACCTAGAG
GATCCATCCGCCCCTGGACTGCCGACCGGCCCTGATGTACCAATTAGTCC
TGTGGAACCAACAAATCCTGATGTACCAATTGATCCTGTGGAACCAACAA
ACCCTGATGATAACCTAGAGGATCCATCCGACCCTGGACTGCCGACCGGC
CCTGATGTTCCAATTGATCCTGTGGAACCAACAAACCCTGATGATAACCT
AGAGGATCCATCCGACCCTGGACTGCCGACCGGCCCTGATGTTCCAATTG
ATCCTGTGGAACCAATAAATCCTGATGAGCCTAACCTAGAGGATCCATTC
GATGAGCCTGACTGTGATAGCCTATCCCATCCAGAACCATCAGGAGAGAG
ACCAGCCGATCTACTGATAGATGAGTGTTTTGAAAGACATAACATGTACC
GATTTAGACATACCGACAACCTTCTTTCATGGGACCATATGTTGCAATCT
TCTGCTCAATTATATGCTGAACAACTAGCACAAACGGAGAGATTTGAGCA
CAGTGAACAACCAGGCATAGgagaaaatttgtattttgcTTTTAATCCTG
TTGGCGTGAAGAGGGAAGGAAACTGTAATCGAGCACTAGATTTATGGTAC
GATGAGATTGAAAATTACGACTTTGGATCTGGGACATCTCTTAATGGAAA
GGTGATAGGACATTTTACACAAATGGTATGGGCGACCACAACAAAAATCG
GTATAGGAATGGCAATCAATGGAGACGGCACTAAAATCTACGTCGTTGCT
CAATACTCACCTCCAGGAAATTTTATTGGTCAATACACTGAGCAAGTAAA
ACCATTACGATGCGCGATACCACTCCCAATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009666XLOC_009666Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017276-proteinTCONS_00017276-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017276-exon-sc0000264-1491911889:109139..110854TCONS_00017276-exon-sc0000264-1491911889:109139..110854Clytia hemisphaericaexon
TCONS_00017276-exon-sc0000264-1510915933:109139..110854TCONS_00017276-exon-sc0000264-1510915933:109139..110854Clytia hemisphaericaexon
TCONS_00017276-exon-sc0000264-1575043694:109139..110854TCONS_00017276-exon-sc0000264-1575043694:109139..110854Clytia hemisphaericaexon
TCONS_00017276-exon-sc0000264-1491911889:113801..114026TCONS_00017276-exon-sc0000264-1491911889:113801..114026Clytia hemisphaericaexon
TCONS_00017276-exon-sc0000264-1510915933:113801..114026TCONS_00017276-exon-sc0000264-1510915933:113801..114026Clytia hemisphaericaexon
TCONS_00017276-exon-sc0000264-1575043694:113801..114026TCONS_00017276-exon-sc0000264-1575043694:113801..114026Clytia hemisphaericaexon
TCONS_00017276-exon-sc0000264-1491911889:115345..115786TCONS_00017276-exon-sc0000264-1491911889:115345..115786Clytia hemisphaericaexon
TCONS_00017276-exon-sc0000264-1510915933:115345..115786TCONS_00017276-exon-sc0000264-1510915933:115345..115786Clytia hemisphaericaexon
TCONS_00017276-exon-sc0000264-1575043694:115345..115786TCONS_00017276-exon-sc0000264-1575043694:115345..115786Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000264supercontigsc0000264:109139..115786 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74364	1.58485	0.775691	0.776962	0.527865	0.985933	1.57104	1.24207	0.239891	0.557143	0	1.16394	0.524449	0.826199	0.823061	0.996266	0.342862	1.03664	0.710924	0.852798	0.693923	0.646173	0.187026	0.552906	0.455339	0.34386	0.0447329	0.11935	0.039496	0.0184457
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001283Allrgn_V5/Tpx1
IPR002413V5_allergen
IPR014044CAP_domain
IPR018244Allrgn_V5/Tpx1_CS
IPR034113SCP_GAPR1-like
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005576 extracellular region
Blast
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BLAST of TCONS_00017276 vs. Swiss-Prot (Human)
Match: GAPR1 (Golgi-associated plant pathogenesis-related protein 1 OS=Homo sapiens GN=GLIPR2 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.596e-17
Identity = 60/165 (36.36%), Postives = 80/165 (48.48%), Query Frame = 3 
Query: 1689 GERPADLLIDECFERHNMYRFRHTDNLLSWDHMLQSSAQLYAEQLAQTERFEHS---EQPGIGENLYFA-FNPVGVKREGNCNRALDLWYDEIENYDFG-----SGTSLNGKVIGHFTQMVWATTTKIGIGMAINGDGTKIYVVAQYSPPGNFI--GQYTEQVKP 2150
            G+  +    +E  + HN YR +H    L     L   AQ Y+E LA T   +HS    +   GENL +A ++  G           D WY EI+NY+F      SGT       GHFT MVW  T K+G+G A   DG+  +VVA+Y P GN +  G + E V P
Sbjct:    2 GKSASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQTG-------KEVADRWYSEIKNYNFQQPGFTSGT-------GHFTAMVWKNTKKMGVGKASASDGSS-FVVARYFPAGNVVNEGFFEENVLP 151
The following BLAST results are available for this feature:
BLAST of TCONS_00017276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GAPR11.596e-1736.36Golgi-associated plant pathogenesis-related protei... [more]
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