|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017268 ID=TCONS_00017268|Name=TCONS_00017268|organism=Clytia hemisphaerica|type=transcript|length=3410bpRun BLAST on NCBI transcript from alignment at sc0000264:49464..72612+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017268 ID=TCONS_00017268|Name=TCONS_00017268|organism=Clytia hemisphaerica|type=transcript|length=23149bp|location=Sequence derived from alignment at sc0000264:49464..72612+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00017268 vs. Swiss-Prot (Human)
Match: AVIL (Advillin OS=Homo sapiens GN=AVIL PE=1 SV=3) HSP 1 Score: 639.032 bits (1647), Expect = 0.000e+0 Identity = 347/833 (41.66%), Postives = 503/833 (60.38%), Query Frame = 1
Query: 118 NAFQGAGVKPGLTLWRVENFGLKKLTEDQHGLFHDGDSYLILQCEGRAAPYASHIHFWLGKKTSQDEAGTAAFKAVELDDILGGSPTQYREIQHHESRKFLSYFPKGVKYNEGGVRSGFKKSEV--VNQKRLFKIKGRKRPRIFEVPLHSDSLNRGDVFILDNGSKVWVWCGAESNRSERRKGMEFARDIRDSERSGKARVLLIEDDPKMRPQKDKNDELSLFFSELGSAGPIKAADARGSDEKHERDMIAKTSLHKVTDTGGQMRVTEIATGRLRYEQMEPRDTYIVDQGGVGLFVRVGSHVSKEQKLQNLKVAVNYLRSKKYPDYTQVTMVTQGSEIPLFKQMFVNWPHKGLRMNQ-QTYHNGRGIAQIQQTKFDAATLHERKK-RQQEKMFDDGKGKIDIWRVEDFRLVPQPKELHGTFFGGDCYVILYTYVKDRREQYIVYYWLGLKSTPDEKGTAAHMTVKMDDSLGGAPMQIRVVQGKEPEHFMRIFQGKMIVYRGGKSSGFRGHQQEVQQSGQPRLFQVHGFGPDSKKALEVEAVAASLNSNDVFLLLTQSEGFLWYGKGCSGDERELAKELAGRVAPRFADDFEK-IQETKEPQRFWEFLGGRGDYASGSYFEQEIPEYPPRLFLCSNATGRFAVEEVFNFTQXXXXXXXXMLLDTHDTIYVWVGKDANSTEKKEAMTTALEYVKTDPSGRDPEKVQMVVIKQGYEPPQFTGHFEAWNDDVFAHGKSYEQIKTELRDENAGISFVQE----ELTKFSFD---RKYPFSVLCQ---EEVPEGVDPTRKEYYLAPDEFYQHFKISFKEYEQKPQWKRDMLKKNAGLF 2571
+AF+ PG+ +WR+E L + HG F++GD Y+IL A+ + IHFW+GK +SQDE AA +LDD LGGSP Q+RE+Q+HES F YF +G+ Y +GGV SG K E + KRL +KG++ R EV + DS NRGDVF+LD G + W G ESN ER K M A+DIRD ER G+A++ +IE D + + + + LG IK DE ++ + L+ ++D+ GQ+ VTE+AT L + + D YI+DQ G ++V G +K +K + A+ +++ K YP T V V G+E +FKQ+F W K M +T+ G+ IA++ Q KFD LH + + QE+M DDG GK+++WR+E+ LVP + +G F+GGDCY++LYTY + + +I+Y W G ++ DE +A+ V++D GA +Q+RV G EP HFM IF+GK++++ GG S + + RLFQ+HG + KA+EV A A+SLNSNDVFLL TQ+E +LWYGKG SGDER +AKELA + D E + E +EP FW+ LGG+ YA+ +QEI + RLF CSN TG+F V E+ +FTQ+D+ DVMLLDT D +++W+G +AN+TEK+ A+ TA +Y+ T PSGRDP+ +++IKQG+EPP FTG F AW+ ++++ GK+YEQ+K EL D A + + L+ S D + YP +VL + +E+PE V+P +KE YL+ +F F I+ ++ P WK+ +KK GLF
Sbjct: 5 SAFRAVDNDPGIIVWRIEKMELALVPVSAHGNFYEGDCYVILSTRRVASLLSQDIHFWIGKDSSQDEQSCAAIYTTQLDDYLGGSPVQHREVQYHESDTFRGYFKQGIIYKQGGVASGMKHVETNTYDVKRLLHVKGKRNIRATEVEMSWDSFNRGDVFLLDLGKVIIQWNGPESNSGERLKAMLLAKDIRDRERGGRAKIGVIEGDK----EAASPELMKVLQDTLGRRSIIKPT---VPDEIIDQKQKSTIMLYHISDSAGQLAVTEVATRPLVQDLLNHDDCYILDQSGTKIYVWKGKGATKAEKQAAMSKALGFIKMKSYPSSTNVETVNDGAESAMFKQLFQKWSVKDQTMGLGKTFSIGK-IAKVFQDKFDVTLLHTKPEVAAQERMVDDGNGKVEVWRIENLELVPVEYQWYGFFYGGDCYLVLYTYEVNGKPHHILYIWQGRHASQDELAASAYQAVEVDRQFDGAAVQVRVRMGTEPRHFMAIFKGKLVIFEGGTS-----RKGNAEPDPPVRLFQIHGNDKSNTKAVEVPAFASSLNSNDVFLLRTQAEHYLWYGKGSSGDERAMAKELASLL----CDGSENTVAEGQEPAEFWDLLGGKTPYANDKRLQQEILDVQSRLFECSNKTGQFVVTEITDFTQDDLNPTDVMLLDTWDQVFLWIGAEANATEKESALATAQQYLHTHPSGRDPD-TPILIIKQGFEPPIFTGWFLAWDPNIWSAGKTYEQLKEELGDAAAIMRITADMKNATLSLNSNDSEPKYYPIAVLLKNQNQELPEDVNPAKKENYLSEQDFVSVFGITRGQFAALPGWKQLQMKKEKGLF 819 The following BLAST results are available for this feature:
BLAST of TCONS_00017268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.