TCONS_00017251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017251
Unique NameTCONS_00017251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2087

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017251 ID=TCONS_00017251|Name=TCONS_00017251|organism=Clytia hemisphaerica|type=transcript|length=2087bp
cTAGACTTGGCATGCCCCATTTTGTCcagaaaattcgaatgttttttgtt
cGATTCggcaaaatgaaacaaaaatgcaACACATTGCAACATtgcaacaa
aataaacaaatatggcgacagtttacaaaatatcaaaacctctgGCATTG
AGTCAATACGATCTCTCTTTGCCATGTTACTTTCGTCGAGTTTTTGGTCC
ATCATGGGATATTTTCTATGGACTACTTTCGGTCATGTCTTTCAGTCTCT
GTACATGGTACGACCTCGAGAAAGACTTCTATCTCCTCCTTTTAAACAGT
TATTTCGACCTGATCATATTCACCGATGCTTCTATGAGTTTATTCATCAG
ATTTTATCAAAGCATTCAAGTTATAGCTGTCAATCGATACATTGAGGCTT
TTTATATTGCAGCGTGGAGTATGCTAGGATTCACTCTAGACCTCATCTCG
TGCACACCGTTCCTTGccgttttgttttttattcaagtGGGAAATAGGAC
GCTAGTCTATCAGATCATTTGTTTACTTCGATTTGGCAGATTATACACGA
CAGCTAGACGCTTTCTTGACAAAACTCTTTACGAGCAAGTGACAGATTAC
GAGGACGAACCCTTCAATGATATTGGCCTCAGTGATTTTGCGAAAGAAGA
TCTCTTCaaaaaagatgaagaaattGGCTCAGCATGGATAAGATCGTTTT
GTTTTGGAACCTAGTTTTTATGGCCAGAAAGACTGATGAGATCATTGTAT
ATCAGAGTTGGTGTGACGTGGGACTTTTGAAATGGACTCGTTGATCTTTA
TCCTGCTTTCACTTCCAATGGGGATTTTTGGAGGGTTAATAATTTTAATG
ACATTGTGATAGTTGATTAGTCATTTTTTCAATCAAGATTCTTTGTAACT
TTCGTTTTAcctaattccaaaaaaaaaagttatataccaaataataaata
ataccGGTCtaaaaaaattggtcaaaattacAAAGTTAAAGTGTTTATGG
ATTACCATGGAATTATAACAAAATTCTAATGTTCGTACTATTTTCTAAAT
TGAGTTATGATATTTAAATTGTAAATTGATATACATAGTAATtattttgc
cagaaaaatgaAATGCCTTGCCGTCAGGATTTAAAATTGAATCCAACAAG
TTTAGAATGGTACTCTTGGAGATCAAAGTTACACGTAGTTGCTAAAGCAA
GGTTATTATGACGAATAAAATCTCTTGCTATAGAAATCAATTATCCTTAG
AATTATCTTTCAGGTTAAAAGAACACAGACACACCTCCCTTTATGTGGCA
ATTTGAAATAATCTTGGTTTTAGTTACAGATTTCCGTAAATGCTATCTTC
ATTATACACTCACTACGATAATCTAATTTGTTGGCATTGAAATTATAAAG
CTTGTTCTTTGGAAGAAAAAGGCTCAATTTGTCTGCTAAAAGGCTTTAGT
AGTTTTATAATCCCTGCGACATGAAAATATTGTCTAAAGTTGACTAACTA
AAACACGAAATTGATAATTAAGAGAAAACAGTGTCttcaaaaaaaacaca
aatttccaaagTTCTTGACCCTAAAAACCTATATACATACATTGATTACG
GGGATcgataaaaatgataaattacgATAGGAGTTGATAAAATCCAAATC
CTGATCCAATGTTTATGTACACCTTAAATTGGAAAATGTTTCGAGTATCC
AAATTTTCCGAAACAAAGTTTCGCGAATAAATCATTTTTCAGCTCATTTC
TAAAGAAGgtgaaaatcgcgaaattcaatCCACTTAACGTAATGTTGGCG
ATTGAGGAATTTTGGCGATGGCACAAAAAGTCTGACACAAATTCAATCAT
AACCGCGAGTGTACTCAACTTTAAATGATGTTGTAGATGTTACATTGACG
TTATTAGTCAGACGGTTGTGTCAGCTGGGAATGTGATTTAGGTCTAGAAA
GCACGGTCCATATATTTCTGAAGTTTGGAATTGGAAAGACCACCATTTCG
ATGCCGTTGTTTCTTATCAAAGACCGTCGTGTCGTCACTTTTATCGTCGG
TATCGGAAAAAGTCAAACTGTTCGCCGTGAATTTGTC
Run BLAST on NCBI

protein sequence of TCONS_00017251-protein

>TCONS_00017251-protein ID=TCONS_00017251-protein|Name=TCONS_00017251-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MATVYKISKPLALSQYDLSLPCYFRRVFGPSWDIFYGLLSVMSFSLCTWY
DLEKDFYLLLLNSYFDLIIFTDASMSLFIRFYQSIQVIAVNRYIEAFYIA
AWSMLGFTLDLISCTPFLAVLFFIQVGNRTLVYQIICLLRFGRLYTTARR
FLDKTLYEQVTDYEDEPFNDIGLSDFAKEDLFKKDEEIGSAWIRSFCFGT
Run BLAST on NCBI

transcript from alignment at sc0000261:215186..217396-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017251 ID=TCONS_00017251|Name=TCONS_00017251|organism=Clytia hemisphaerica|type=transcript|length=2211bp|location=Sequence derived from alignment at sc0000261:215186..217396- (Clytia hemisphaerica)
CTAGACTTGGCATGCCCCATTTTGTCCAGAAAATTCGAATGTTTTTTGTT
CGATTCGGCAAAATGAAACAAAAATGCAACACATTGCAACATTGCAACAA
AATAAACAAATATGGCGACAGTTTACAAAATATCAAAACCTCTGGCATTG
AGTCAATACGATCTCTCTTTGCCATGTTACTTTCGTCGAGTTTTTGGTCC
ATCATGGGATATTTTCTATGGACTACTTTCGGTCATGTCTTTCAGTCTCT
GTACATGGTACGACCTCGAGAAAGACTTCTATCTCCTCCTTTTAAACAGT
TATTTCGACCTGATCATATTCACCGATGCTTCTATGAGTTTATTCATCAG
ATTTTATCAAAGCATTCAAGTTATAGCTGTCAATCGATACATTGAGGCTT
TTTATATTGCAGCGTGGAGTATGCTAGGATTCACTCTAGACCTCATCTCG
TGCACACCGTTCCTTGCCGTTTTGTTTTTTATTCAAGTGGGAAATAGGAC
GCTAGTCTATCAGATCATTTGTTTACTTCGATTTGGCAGATTATACACGA
CAGCTAGACGCTTTCTTGACAAAAGTAAGTGCTATCAATTTTGTAACAGA
GATCATTTTCCCCAATTTTTGGCCCCAAAAAATATCACACCTCGAATATG
ATACTATTCTGAAGTTATGATGTAATTCTATTTTGTTTCTCATTTCAGCT
CTTTACGAGCAAGTGACAGATTACGAGGACGAACCCTTCAATGATATTGG
CCTCAGTGATTTTGCGAAAGAAGATCTCTTCAAAAAAGATGAAGAAATTG
GCTCAGCATGGATAAGATCGTTTTGTTTTGGAACCTAGTTTTTATGGCCA
GAAAGACTGATGAGATCATTGTATATCAGAGTTGGTGTGACGTGGGACTT
TTGAAATGGACTCGTTGATCTTTATCCTGCTTTCACTTCCAATGGGGATT
TTTGGAGGGTTAATAATTTTAATGACATTGTGATAGTTGATTAGTCATTT
TTTCAATCAAGATTCTTTGTAACTTTCGTTTTACCTAATTCCAAAAAAAA
AAGTTATATACCAAATAATAAATAATACCGGTCTAAAAAAATTGGTCAAA
ATTACAAAGTTAAAGTGTTTATGGATTACCATGGAATTATAACAAAATTC
TAATGTTCGTACTATTTTCTAAATTGAGTTATGATATTTAAATTGTAAAT
TGATATACATAGTAATTATTTTGCCAGAAAAATGAAATGCCTTGCCGTCA
GGATTTAAAATTGAATCCAACAAGTTTAGAATGGTACTCTTGGAGATCAA
AGTTACACGTAGTTGCTAAAGCAAGGTTATTATGACGAATAAAATCTCTT
GCTATAGAAATCAATTATCCTTAGAATTATCTTTCAGGTTAAAAGAACAC
AGACACACCTCCCTTTATGTGGCAATTTGAAATAATCTTGGTTTTAGTTA
CAGATTTCCGTAAATGCTATCTTCATTATACACTCACTACGATAATCTAA
TTTGTTGGCATTGAAATTATAAAGCTTGTTCTTTGGAAGAAAAAGGCTCA
ATTTGTCTGCTAAAAGGCTTTAGTAGTTTTATAATCCCTGCGACATGAAA
ATATTGTCTAAAGTTGACTAACTAAAACACGAAATTGATAATTAAGAGAA
AACAGTGTCTTCAAAAAAAACACAAATTTCCAAAGTTCTTGACCCTAAAA
ACCTATATACATACATTGATTACGGGGATCGATAAAAATGATAAATTACG
ATAGGAGTTGATAAAATCCAAATCCTGATCCAATGTTTATGTACACCTTA
AATTGGAAAATGTTTCGAGTATCCAAATTTTCCGAAACAAAGTTTCGCGA
ATAAATCATTTTTCAGCTCATTTCTAAAGAAGGTGAAAATCGCGAAATTC
AATCCACTTAACGTAATGTTGGCGATTGAGGAATTTTGGCGATGGCACAA
AAAGTCTGACACAAATTCAATCATAACCGCGAGTGTACTCAACTTTAAAT
GATGTTGTAGATGTTACATTGACGTTATTAGTCAGACGGTTGTGTCAGCT
GGGAATGTGATTTAGGTCTAGAAAGCACGGTCCATATATTTCTGAAGTTT
GGAATTGGAAAGACCACCATTTCGATGCCGTTGTTTCTTATCAAAGACCG
TCGTGTCGTCACTTTTATCGTCGGTATCGGAAAAAGTCAAACTGTTCGCC
GTGAATTTGTC

Coding sequence (CDS) from alignment at sc0000261:215186..217396-

>TCONS_00017251 ID=TCONS_00017251|Name=TCONS_00017251|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at sc0000261:215186..217396- (Clytia hemisphaerica)
CTCTTTACGAGCAAGTGACAGATTACGAGGACGAACCCTTCAATGATATT
GGCCTCAGTGATTTTGCGAAAGAAGATCTCTTCAAAAAAGATGAAGAAAT
TGGCTCAGCATGGATAAGATCGTTTTGTTTTGGAACCTAGATGGCGACAG
TTTACAAAATATCAAAACCTCTGGCATTGAGTCAATACGATCTCTCTTTG
CCATGTTACTTTCGTCGAGTTTTTGGTCCATCATGGGATATTTTCTATGG
ACTACTTTCGGTCATGTCTTTCAGTCTCTGTACATGGTACGACCTCGAGA
AAGACTTCTATCTCCTCCTTTTAAACAGTTATTTCGACCTGATCATATTC
ACCGATGCTTCTATGAGTTTATTCATCAGATTTTATCAAAGCATTCAAGT
TATAGCTGTCAATCGATACATTGAGGCTTTTTATATTGCAGCGTGGAGTA
TGCTAGGATTCACTCTAGACCTCATCTCGTGCACACCGTTCCTTGCCGTT
TTGTTTTTTATTCAAGTGGGAAATAGGACGCTAGTCTATCAGATCATTTG
TTTACTTCGATTTGGCAGATTATACACGACAGCTAGACGCTTTCTTGACA
AAACTCTTTACGAGCAAGTGACAGATTACGAGGACGAACCCTTCAATGAT
ATTGGCCTCAGTGATTTTGCGAAAGAAGATCTCTTCAAAAAAGATGAAGA
AATTGGCTCAGCATGGATAAGATCGTTTTGTTTTGGAACCTAGATGGCGA
CAGTTTACAAAATATCAAAACCTCTGGCATTGAGTCAATACGATCTCTCT
TTGCCATGTTACTTTCGTCGAGTTTTTGGTCCATCATGGGATATTTTCTA
TGGACTACTTTCGGTCATGTCTTTCAGTCTCTGTACATGGTACGACCTCG
AGAAAGACTTCTATCTCCTCCTTTTAAACAGTTATTTCGACCTGATCATA
TTCACCGATGCTTCTATGAGTTTATTCATCAGATTTTATCAAAGCATTCA
AGTTATAGCTGTCAATCGATACATTGAGGCTTTTTATATTGCAGCGTGGA
GTATGCTAGGATTCACTCTAGACCTCATCTCGTGCACACCGTTCCTTGCC
GTTTTGTTTTTTATTCAAGTGGGAAATAGGACGCTAGTCTATCAGATCAT
TTGTTTACTTCGATTTGGCAGATTATACACGACAGCTAGACGCTTTCTTG
ACAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009652XLOC_009652Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017251-proteinTCONS_00017251-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017251-exon-sc0000261-1575043694:216823..217396TCONS_00017251-exon-sc0000261-1575043694:216823..217396Clytia hemisphaericaexon
TCONS_00017251-exon-sc0000261-1575043694:215186..216698TCONS_00017251-exon-sc0000261-1575043694:215186..216698Clytia hemisphaericaexon
TCONS_00017251-exon-sc0000261-1510915933:216823..217396TCONS_00017251-exon-sc0000261-1510915933:216823..217396Clytia hemisphaericaexon
TCONS_00017251-exon-sc0000261-1510915933:215186..216698TCONS_00017251-exon-sc0000261-1510915933:215186..216698Clytia hemisphaericaexon
TCONS_00017251-exon-sc0000261-1491911889:216823..217396TCONS_00017251-exon-sc0000261-1491911889:216823..217396Clytia hemisphaericaexon
TCONS_00017251-exon-sc0000261-1491911889:215186..216698TCONS_00017251-exon-sc0000261-1491911889:215186..216698Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000261supercontigsc0000261:215186..217396 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.47352	1.19743	0.449182	0.272043	4.12709	3.03984	3.88603	4.52483	4.10717	3.6085	7.40693	3.44732	3.05304	3.23586	2.74613	3.40749	2.59523	2.71817	3.15284	3.04705	3.39731	3.58145	4.11546	4.98217	10.8107	10.0465	3.85964	3.84266	4.78066	3.75987
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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