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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017249 ID=TCONS_00017249|Name=TCONS_00017249|organism=Clytia hemisphaerica|type=transcript|length=1298bp
CCATTGAAGGCATTGTTAGCAATTCACAATTTATTCCGGGGGTCAGCTTC
TTGAAATGCAATCCCCCATAAAAAGCACCATTTGTAAGTAAGAAGCATTA
CTTTGATAGAAGTTTGATCTTTCTTTTAAAAGCATTACTTTCAACCGTCT
TACTGACAGACCATGAAGGTGTTTCTAATTTTGATGCTGGCATACTTGCC
AATACTGTTGTTGAAAGCAGATTCAGCTCATGATATCAAGATCTTGAAAC
TACAAGTTAAAGCATTGATTAAAATGGTGACAGATGCAAACCAGAAGGTG
AGTCAGACTAATAACAGACTGACGCAGGAGGTGACAAATGTCCGACAAGA
AGCCAGCCGAAACCTCACCAGAGAAAACCAAGCAATAAACAAGAAGTTGT
CACAATCAAGCCAAGCAATGAGTCAAAAGTTGAGCCAAACAAATCAAGAT
CTGCAAGCTTTAAAAGACAAAGATCAAACTCTCAACGGATTCTGTAAGAC
CAAATCAACAGTATGCGGATCATGTTTTTGCGTCGAAGATTTCAACATTC
CTGCAAAGTTTTATTGTGATTGCCGAGCGAAACCGGCGAGAAGAGATTGC
AAGGAGCATTACTTGCAAGGGGAACGGACCAATGGGCTTTACCGGATCAA
TATGAATACTTATGGAATGGTCGTTCCGGCGTATTGCGATCAAAACACAG
ATGGAGGTGGCTGGACAGTCGTTCAGAGGCGTGTTGACGATTCAACCAAT
TTTTATCGCAACTGGAAACCATACAAAGAGGGTTTTGGACAAATCCATCA
CGAACATTGGCTTGGGAACGACAACCTCAATCTCCTCACTGCACAAGCTG
TTTTGACCGGCTCAGAAATCCGCTTTGAATTAGGAATAAAGGGTAAAAAC
TATAGACGTTATGctaaatattcaaattttcatgtcGATGCAGAATCGAA
TGCTTATCAACTTCACATCAGTGGATATTCGGCCGGTAACCTTGGTGATC
GGATGTCGTACCACAACGGCATGAAATGGACGACTCAAGACCGAGACAAC
GACAAATGGGCTTATAATTGTGCTGCTTATACCAATGGCTATATTGGGGC
TTGGTGGTATAATAATTGTGTAACTGCATCGGGTTGCAGTTTGAATAGTC
CTTACGACAGATACAGCAGAGAAAGAAGTATCGGACATTATTTTATATGG
CATCCTTATCGTCTCCAATCCTCGGAAATGAAAGTGAGAAGAAAATGAAT
TGTAAACTTTGATTTTCTATTTTACTAAGTCAAAGATATTATCATGAA Run BLAST on NCBI protein sequence of TCONS_00017249-protein >TCONS_00017249-protein ID=TCONS_00017249-protein|Name=TCONS_00017249-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
MKVFLILMLAYLPILLLKADSAHDIKILKLQVKALIKMVTDANQKVSQTN
NRLTQEVTNVRQEASRNLTRENQAINKKLSQSSQAMSQKLSQTNQDLQAL
KDKDQTLNGFCKTKSTVCGSCFCVEDFNIPAKFYCDCRAKPARRDCKEHY
LQGERTNGLYRINMNTYGMVVPAYCDQNTDGGGWTVVQRRVDDSTNFYRN
WKPYKEGFGQIHHEHWLGNDNLNLLTAQAVLTGSEIRFELGIKGKNYRRY
AKYSNFHVDAESNAYQLHISGYSAGNLGDRMSYHNGMKWTTQDRDNDKWA
YNCAAYTNGYIGAWWYNNCVTASGCSLNSPYDRYSRERSIGHYFIWHPYR
LQSSEMKVRRK Run BLAST on NCBI transcript from alignment at sc0000261:22914..24727- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017249 ID=TCONS_00017249|Name=TCONS_00017249|organism=Clytia hemisphaerica|type=transcript|length=1814bp|location=Sequence derived from alignment at sc0000261:22914..24727- (Clytia hemisphaerica)
CCATTGAAGGCATTGTTAGCAATTCACAATTTATTCCGGGGGTCAGCTTC
TTGAAATGCAATCCCCCATAAAAAGCACCATTTGTAAGTAAGAAGCATTA
CTTTGATAGAAGTTTGATCTTTCTTTTAAAAGCATTACTTTCAACCGTCT
TACTGACAGACCATGAAGGTGTTTCTAATTTTGATGCTGGCATACTTGCC
AATACTGTTGTTGAAAGCAGATTCAGCTCATGATATCAAGATCTTGAAAC
TACAAGTTAAAGCATTGATTAAAATGGTGACAGATGCAAACCAGAAGGTG
AGTCAGACTAATAACAGACTGACGCAGGAGGTGACAAATGTCCGACAAGA
AGCCAGCCGAAACCTCACCAGAGAAAACCAAGCAATAAACAAGAAGTTGT
CACAATCAAGCCAAGCAATGAGTCAAAAGTTGAGCCAAACAAATCAAGAT
CTGCAAGCTTTAAAAGACAAAGATCAAACTCTCAACGGATTCTGTAAGAC
CAAATCAACAGTATGCGGATCATGTTTTTGCGTCGAAGATTTCAACATTC
CTGCAAAGTTTTATTGTGATTGCCGAGCGAAACCGGCGAGAAGAGATTGC
AAGGAGCATTACTTGCAAGGGGAACGGACCAATGGGCTTTACCGGATCAA
TATGAATACTTATGGAATGGTCGTTCCGGCGTATTGCGATCAAAACACAG
ATGGAGGTTCGTAAACTTTTTTTCTCTTATTTTTCTGGTGTTTAGTAAAA
TACTAGGAGGATACTAGTCTGTACACAGACCCGATATCTACGGCTAATTT
CAAAATTCATTGCCTTAGAGAGTATGTTGTCATTGTATTTTCTGATTTGA
GATTTTTCAAACCGACCGCTGCGATAGAGTGCGGGTGAGAGAGGGGAGAC
GATGAGAGAAGTGTTGTATCATACTTCATCGCAGAGGTCTCCGTACGGGA
ATTTTTTTTTATCAAGCAGACAATGCGCACAGAGTGTTGTAATACGAAAC
GATAAACGTGAGATGGAGGGGGGGGGTACTTACCTAGGGTCAATACTTAC
CTTGATGTGTCGGAGAATCCTTTAAAAGCTTCCAAAACTTGTGTTTTTTT
TGTATGAAGATCTTTTTTGTTAAATCCATTAGATAATAATTGATGTTTAT
ATACACTTTACATACAAAATTGCCCCGCTTCATACAACCTTAACATTTGT
TACCCATCTTCTCCATTTTAAGGTGGCTGGACAGTCGTTCAGAGGCGTGT
TGACGATTCAACCAATTTTTATCGCAACTGGAAACCATACAAAGAGGGTT
TTGGACAAATCCATCACGAACATTGGCTTGGGAACGACAACCTCAATCTC
CTCACTGCACAAGCTGTTTTGACCGGCTCAGAAATCCGCTTTGAATTAGG
AATAAAGGGTAAAAACTATAGACGTTATGCTAAATATTCAAATTTTCATG
TCGATGCAGAATCGAATGCTTATCAACTTCACATCAGTGGATATTCGGCC
GGTAACCTTGGTGATCGGATGTCGTACCACAACGGCATGAAATGGACGAC
TCAAGACCGAGACAACGACAAATGGGCTTATAATTGTGCTGCTTATACCA
ATGGCTATATTGGGGCTTGGTGGTATAATAATTGTGTAACTGCATCGGGT
TGCAGTTTGAATAGTCCTTACGACAGATACAGCAGAGAAAGAAGTATCGG
ACATTATTTTATATGGCATCCTTATCGTCTCCAATCCTCGGAAATGAAAG
TGAGAAGAAAATGAATTGTAAACTTTGATTTTCTATTTTACTAAGTCAAA
GATATTATCATGAA Coding sequence (CDS) from alignment at sc0000261:22914..24727- >TCONS_00017249 ID=TCONS_00017249|Name=TCONS_00017249|organism=Clytia hemisphaerica|type=CDS|length=2172bp|location=Sequence derived from alignment at sc0000261:22914..24727- (Clytia hemisphaerica)
GTGGCTGGACAGTCGTTCAGAGGCGTGTTGACGATTCAACCAATTTTTAT
CGCAACTGGAAACCATACAAAGAGGGTTTTGGACAAATCCATCACGAACA
TTGGCTTGGGAACGACAACCTCAATCTCCTCACTGCACAAGCTGTTTTGA
CCGGCTCAGAAATCCGCTTTGAATTAGGAATAAAGGGTAAAAACTATAGA
CGTTATGCTAAATATTCAAATTTTCATGTCGATGCAGAATCGAATGCTTA
TCAACTTCACATCAGTGGATATTCGGCCGGTAACCTTGGTGATCGGATGT
CGTACCACAACGGCATGAAATGGACGACTCAAGACCGAGACAACGACAAA
TGGGCTTATAATTGTGCTGCTTATACCAATGGCTATATTGGGGCTTGGTG
GTATAATAATTGTGTAACTGCATCGGGTTGCAGTTTGAATAGTCCTTACG
ACAGATACAGCAGAGAAAGAAGTATCGGACATTATTTTATATGGCATCCT
TATCGTCTCCAATCCTCGGAAATGAAAGTGAGAAGAAAATGAATGAAGGT
GTTTCTAATTTTGATGCTGGCATACTTGCCAATACTGTTGTTGAAAGCAG
ATTCAGCTCATGATATCAAGATCTTGAAACTACAAGTTAAAGCATTGATT
AAAATGGTGACAGATGCAAACCAGAAGGTGAGTCAGACTAATAACAGACT
GACGCAGGAGGTGACAAATGTCCGACAAGAAGCCAGCCGAAACCTCACCA
GAGAAAACCAAGCAATAAACAAGAAGTTGTCACAATCAAGCCAAGCAATG
AGTCAAAAGTTGAGCCAAACAAATCAAGATCTGCAAGCTTTAAAAGACAA
AGATCAAACTCTCAACGGATTCTGTAAGACCAAATCAACAGTATGCGGAT
CATGTTTTTGCGTCGAAGATTTCAACATTCCTGCAAAGTTTTATTGTGAT
TGCCGAGCGAAACCGGCGAGAAGAGATTGCAAGGAGCATTACTTGCAAGG
GGAACGGACCAATGGGCTTTACCGGATCAATATGAATACTTATGGAATGG
TCGTTCCGGCGTATTGCGATCAAAACACAGATGGAGGTGGCTGGACAGTC
GTTCAGAGGCGTGTTGACGATTCAACCAATTTTTATCGCAACTGGAAACC
ATACAAAGAGGGTTTTGGACAAATCCATCACGAACATTGGCTTGGGAACG
ACAACCTCAATCTCCTCACTGCACAAGCTGTTTTGACCGGCTCAGAAATC
CGCTTTGAATTAGGAATAAAGGGTAAAAACTATAGACGTTATGCTAAATA
TTCAAATTTTCATGTCGATGCAGAATCGAATGCTTATCAACTTCACATCA
GTGGATATTCGGCCGGTAACCTTGGTGATCGGATGTCGTACCACAACGGC
ATGAAATGGACGACTCAAGACCGAGACAACGACAAATGGGCTTATAATTG
TGCTGCTTATACCAATGGCTATATTGGGGCTTGGTGGTATAATAATTGTG
TAACTGCATCGGGTTGCAGTTTGAATAGTCCTTACGACAGATACAGCAGA
GAAAGAAGTATCGGACATTATTTTATATGGCATCCTTATCGTCTCCAATC
CTCGGAAATGAAAGTGAGAAGAAAATGAATGAAGGTGTTTCTAATTTTGA
TGCTGGCATACTTGCCAATACTGTTGTTGAAAGCAGATTCAGCTCATGAT
ATCAAGATCTTGAAACTACAAGTTAAAGCATTGATTAAAATGGTGACAGA
TGCAAACCAGAAGGTGAGTCAGACTAATAACAGACTGACGCAGGAGGTGA
CAAATGTCCGACAAGAAGCCAGCCGAAACCTCACCAGAGAAAACCAAGCA
ATAAACAAGAAGTTGTCACAATCAAGCCAAGCAATGAGTCAAAAGTTGAG
CCAAACAAATCAAGATCTGCAAGCTTTAAAAGACAAAGATCAAACTCTCA
ACGGATTCTGTAAGACCAAATCAACAGTATGCGGATCATGTTTTTGCGTC
GAAGATTTCAACATTCCTGCAAAGTTTTATTGTGATTGCCGAGCGAAACC
GGCGAGAAGAGATTGCAAGGAGCATTACTTGCAAGGGGAACGGACCAATG
GGCTTTACCGGATCAATATGAATACTTATGGAATGGTCGTTCCGGCGTAT
TGCGATCAAAACACAGATGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017249-exon-sc0000261-1575043694:24022..24727 | TCONS_00017249-exon-sc0000261-1575043694:24022..24727 | Clytia hemisphaerica | exon |
| TCONS_00017249-exon-sc0000261-1575043694:22914..23505 | TCONS_00017249-exon-sc0000261-1575043694:22914..23505 | Clytia hemisphaerica | exon |
| TCONS_00017249-exon-sc0000261-1510915933:24022..24727 | TCONS_00017249-exon-sc0000261-1510915933:24022..24727 | Clytia hemisphaerica | exon |
| TCONS_00017249-exon-sc0000261-1510915933:22914..23505 | TCONS_00017249-exon-sc0000261-1510915933:22914..23505 | Clytia hemisphaerica | exon |
| TCONS_00017249-exon-sc0000261-1491911889:24022..24727 | TCONS_00017249-exon-sc0000261-1491911889:24022..24727 | Clytia hemisphaerica | exon |
| TCONS_00017249-exon-sc0000261-1491911889:22914..23505 | TCONS_00017249-exon-sc0000261-1491911889:22914..23505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000261 | supercontig | sc0000261:22914..24727 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00017249 vs. Swiss-Prot (Human)
Match: FBCD1 (Fibrinogen C domain-containing protein 1 OS=Homo sapiens GN=FIBCD1 PE=1 SV=2) HSP 1 Score: 162.54 bits (410), Expect = 2.824e-44 Identity = 112/344 (32.56%), Postives = 164/344 (47.67%), Query Frame = 1
Query: 259 KALIKMVTDANQKVSQTNNRLTQEVTNVRQEASRNLTRENQAINKKLSQSSQAMSQKLSQTNQDLQALKDKDQTLNGFCKTKSTVCGSCFCVEDFNIPAKFYCDCRAKPAR-------------RDCKEHYLQGERTNGLYRINMNTYGMVVPAYCDQNTDGGGWTVVQRRVDDSTNFYRNWKPYKEGFGQIHHEHWLGNDNLNLLTAQAVLTGSEIRFELGIKGKNYRRYAKYSN--FHVDAESNAYQLHISGYSAGNLGDRMSYHNGMKWTTQDRDNDKWAYNCAAYTNGYIGAWWYNNCVTA--SGCSLNSPYDRYSRERSIGHYFIWHPYRLQSSEMKVR 1239
+A ++V D Q++ T L ++ + AS L E + K Q +S S+ + +Q L + + + S + + P + D + PAR RDC + L G++ +G+Y + Y YCD TDGGGWTV QRR D S NF+R W Y++GFG++ EHWLG ++ LT QA + E G Y RY + F VD E + Y L ++ YS G GD + H+GM++TT+DRD+D NCAA+ Y GAWWY NC T+ +G L + Y+ + W Y L+ SEMK+R
Sbjct: 123 QAQPRLVGDQEQELLDT---LADQLPRLLARAS-ELQTECMGLRKGHGTLGQGLSALQSEQGRLIQLLSESQGHMAHLVNSVSDILDALQRDRGLGRP-RNKADLQRAPARGTRPRGCATGSRPRDCLDVLLSGQQDDGVYSVFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWDAYRDGFGRLTGEHWLGLKRIHALTTQAAYE-LHVDLEDFENGTAYARYGSFGVGLFSVDPEEDGYPLTVADYS-GTAGDSLLKHSGMRFTTKDRDSDHSENNCAAF---YRGAWWYRNCHTSNLNGQYLRGAHASYADGVEWSSWTGWQ-YSLKFSEMKIR 455
The following BLAST results are available for this feature:
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