TCONS_00017240 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00017240
Unique Name	TCONS_00017240
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1487

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000261:275180..282648+
coding sequence from alignment at sc0000261:275180..282648+

transcript sequence

>TCONS_00017240 ID=TCONS_00017240|Name=TCONS_00017240|organism=Clytia hemisphaerica|type=transcript|length=1487bp
agagGATTCAACTAAATACACAGTAACACCAAATAATAAAAATCACCTTG
CCGCCATCATGAAGGTTTTGTTATTGTTTATTGGTGTTGCTATGGTAACA
TGTTTACCAAGAGAAGAATTCCAACATCATATTGATGCTGTGAACAGAGC
AAAGACAACCTGGAAAGCTGGTCACAACTTTGGTGAAGAGACTTCATTGG
ATTATGTTAAAGGGTTGTGTGGTTCTTTGTCAAATCCTGCTATCCGTGCC
CAAATGGAAATGAGAGGAGCACCAAACAATGTTGGTGATATCCCAGAATC
CTTCGACTCGCGTGACAAATGGGACAAGTGTCCATCTATCAAAGAAATCC
GCGATCAAGGCTCATGTGGCTCATGTTGGGCTTTTGGAGCAACTGAAGCA
ATGACTGATCGTATTTGCGTGAAGAGTGGTATGACTTATCACTTGTCAGC
TGAAGATTTGGCAACATGCTGTGATTCATGTGGATTTGGATGTAATGGAG
GTTACCCAGAGGCTGCATGGAACTACTACAAGAACACTGGTATTGTCACT
GGAGGACCTTACAACTCCAAACAAGGTTGCCGACCATACCAAATTCCTGC
CTGTGACCACCACGTTCCTGAATCCAAAAACCCATGTCATGGTGAACTTC
CAACCCCAAGATGTGAACACTCTTGCATCAGCAGCTACAATAAGACCTAC
AATGCTGACCACCACTTTGCTTTGACCTCTTACGCCGTCTCATCTGACGT
CAACGCCATTGCCAACGAGATCATGACTCATGGCCCCGTTGAAGCTGCTT
TCACCGTCTACGCTGATTTCCCTAACTACAAATCTGGAGTCTACCAACAC
GTATCAGGAAGTGCTTTGGGCGGTCACGCCATCAAAATCCTCGGATGGGG
CGTTGAAGATGGAACACCCTACTGGTTGGTTGCCAACTCATGGAACCCAA
AATGGGGAGACAAAGGTTTCTTCAAGATCTTGAGAGGATCCGATCACTGT
GGAATCGAAAGTGGCGTAGTTGCTGGTATCCCAAATTAAACGCCCTATCA
TAACTCCCTTCAAGCGCTTTCAAAAGGGACGCTGTTTTCCCTCGTCATCC
TTACGGTTTAAAACgaaattagattttctgtaaaaaaaatgttgattttg
taatgattatttgattgatttttttttattttgatttgtttattgagttg
agaattattttttgtttattcgtTCATCTTTTTGCATTGTTCATTGTAAT
ATTTTTACGTTATTTTTTGTAcgcaaattcaatttcattttcatttttca
cgcAGCTTGTAAATTATTTTAAGCACCTTTTTTACATCTATCGGGGATCG
AACGCATTCTTTTAggaatcattaattttttgaagTATGTAAATGGTAAA
AGTGGTCTCTTGTtaggaataatttttttcatatgaaTGATTTTTATAGC
AACGTATAACACTAAAATAAATGTCATGATAccttta

Run BLAST on NCBI

protein sequence of TCONS_00017240-protein

>TCONS_00017240-protein ID=TCONS_00017240-protein|Name=TCONS_00017240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
EDSTKYTVTPNNKNHLAAIMKVLLLFIGVAMVTCLPREEFQHHIDAVNRA
KTTWKAGHNFGEETSLDYVKGLCGSLSNPAIRAQMEMRGAPNNVGDIPES
FDSRDKWDKCPSIKEIRDQGSCGSCWAFGATEAMTDRICVKSGMTYHLSA
EDLATCCDSCGFGCNGGYPEAAWNYYKNTGIVTGGPYNSKQGCRPYQIPA
CDHHVPESKNPCHGELPTPRCEHSCISSYNKTYNADHHFALTSYAVSSDV
NAIANEIMTHGPVEAAFTVYADFPNYKSGVYQHVSGSALGGHAIKILGWG
VEDGTPYWLVANSWNPKWGDKGFFKILRGSDHCGIESGVVAGIPN

Run BLAST on NCBI

transcript from alignment at sc0000261:275180..282648+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00017240 ID=TCONS_00017240|Name=TCONS_00017240|organism=Clytia hemisphaerica|type=transcript|length=7469bp|location=Sequence derived from alignment at sc0000261:275180..282648+ (Clytia hemisphaerica)
agagGATTCAACTAAATACACAGTAACACCAAATAATAAAAATCACCTTG
CCGCCATCATGAAGGTTTTGTTATTGTTTATTGGTGTTGCTATGGTAACA
TGTTTACCAAGAGAAGAATTCCAACATCATATTGATGCTGTGAACAGAGC
AAAGACAACCTGGAAAGCTGGTCACAACTTTGGTGAAGAGACTTCATTGG
ATTATGTTAAAGGGTTGTGTGGTTCTTTGTCAAATCCTGCTATCCGTGCC
CAAATGGAAAGTAAGGCTACTTTATAATTTGACACTGACTTCTGGTAGTC
CTATGGTCAATGTTGGTAAAATTAGTAAAACTGTTGCACTTACTATGTGT
TTATTTCAGGGGGAATGGTAATAATAGTAACTGTGAAACCAGGGGATTTT
TCCTATTCTTATAATGGGTGCTACATATTAATTTACTTTATCATTCCCCT
GTAGCTAAGAATTTGTAACAGGAAGTTTCTTTCATTTATGTATTAGATTC
TATTATTTCGAATATTGAAGGAGGTAACCGAAcaagaatatctttccaag
gaATATCCATCGGAAAAGCCTAGATTATTCTTctaaattttgtttgtttt
tttccacAGTGAGAGGAGCACCAAACAATGTTGGTGATATCCCAGAATCC
TTCGACTCGCGTGACAAATGGGACAAGTGTCCATCTATCAAAGAAATCCG
CGATCAAGGCTCATGTGGCTCATGTTGGGTAAGCGAGACTTTTTTATTTA
GgctaaatttgttttgtttatcaAGGCTAGAAAGCTGGGTGTCAACAGGG
AAAAATTCGTGGCAAATTTgttatttgcaaaaaaataaatccagactTGT
CCAAACATTAAAaacctattgttttatttgcgATAAGGCGAAAAGAAGTA
agcgatgaaaaatgaaaacatttttattcattttcaaaaaaacctaTAGA
AGAGCTTTCAATGCATCAATTTTAGGATTATAAGAATcatttttaagcta
ttttttccAGTAGGAAGGGGTTTTGAGTCTGAGGAGCCGAAGGGAGAATT
TGTTTGCTAATTTTGCGATATCAATCTCTATTTTTTGTAGGCTTTTGGAG
CAACTGAAGCAATGACTGATCGTATTTGCGTGAAGAGTGGTATGACTTAT
CACTTGTCAGCTGAAGATTTGGCAACATGCTGTGATTCATGTGGATTTGG
ATGTAATGGAGGTTACCCAGAGGTGAGTTTTCCATTAGTCATTATCAAAA
CACTgatctggaaggcttttgtctcttttgtCTCTTACGTACCGAAATCA
ATTTTACCTTGGTTTTACCGGGTGACTCAGAAAAAAGTATTGGTTTGGGT
TTGATGGTTAACTGTGTCCAAAATAATGCAAATTTTTATTATAAATTATA
TCTTTCGAAAATTCACAATGTTAAAAAATACATaacttaaagtttcatgc
ttatcgcaatcatcagatgtgtaaaaaacatttttaaaaaaaccgTCTTA
TGTACAGATTTGAAGTGtggaaaaaatcgtaaaaatgattaaaagcaatt
atgacaaattaggcgataaaaatgattaaaagcaGTTATGACAAATTAGG
CGATACAAActataaaactttaaaaagattcaaGTGTCCGGTGGGAtgct
ttttatgtttttcaacAAATGTTTATTAACGTGCCTACACGTGGAAATCA
GTTCGGATCTTTTATTTAAGAGTTTTTGTTTAGAATTGATGATGTGGAAC
TTTTCAGTTAAGCACAAATTTCACATTCAGACATGAAGATAAGGCAAATT
CGACTGAATTATCGAAACACATCTGGAGCCTACAAAAGCAAGACATTCAA
CCCATATTATCATGGGAAATAATCGATCATGCTCGACCATTTGCAAACGG
AGGTAAAACGTGTAATTTGTGCTTAACTGAAAAGTTCCACATCANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTATCGCCTAATTTGTCATAACtgcttttaatcatttttatcgcc
taatttgtcataattgcttttaatcatttttacgattttttccaCACTTC
AAATCTGTACATAAGacggtttttttttaaatgttttttacacatctgat
gattgcgataagcatgaaactttaagtaATGTATTTTTTAACATTGTGAA
TTTTCGAAAGATATAATTTATGATTCGCTCTACGAAGTATTGAGCACTAT
TTTAATGGTTGTCCAACTAAGATgcaaatttttattatattctttttcaa
ttgtcaagaggaaaggcaaaattaaaatttggcATATAGCTTTTTAAAAT
AGGTACAAGAGATgctcaagttataagctttgaagtcaaaatttgctttt
gaaaaagtctaaaaaaactTCAAGAAGGGTATCAAATTAagcatttttta
acatttttcactTATTTAACTAACTAAAActaactttaaaatttttgaaa
aatcgcaCAGAATTACTGTTTTCCTATTTTGCGCCATAACTTTTGTTAGG
ATAGTTGATAGAAATCAACTGAGATCATTTAATTGAGTCGTCAAAGTCAT
TGGAATagagaaaatgttttgtttttttgcataaaattgcGTTAATTTGA
TAccccattttttcaaaaggaaattttgacttcaaagcttataacttgag
aaccactttaccaattttaaaaagttgtataccaaatttttagTTTGCAT
TTCCTCTTTTAATGACAAAAGAATTCATTAAAAGTTCATATTATTTTGGA
CACAGTTAGCCATCAAACCTTTATACTTTTTTTCTGGGTCACCCAGTAGA
TTCGATAGTTTATGTGAACACCCTTTTTTAAAGGAGAAACAGctgattct
ctctaattcgatcttcaagggactgAGAGAATTTACTTCGAATTAAAGGa
ggattcaaattatagaaagtattttaatgCTAGCTGACGGGGCCAATATT
TAGGTTCagattactttaatgggataaattttcgcggagattaaattttg
cagatATGGCATTATCAGGAggcaatattttcactttctttttactttct
ttttactgTCAAATTATACATACTGtttgttgaaatacgcattattagct
cttctttgatgacagttaaaattttaaaagcagtaatttcaaactttttg
agttttgttcaaaaaaatttcgTGGATAAGACtgtccaaatttccattgg
gagttaatttcgcggatgacgcACAATTCCGCGAAAtctgcgaaaattaa
tcccattaaagtatagaaagattcggatagtagaagttcgaattagagag
agttgactgtctTTCATATATTGTCAgtcacaatttttgaaattcccttT
TTGTTCCACAACAAAGATTTGATTCACTGATTCTCTTTATTCTCGagcat
ttttttttcgatttcctGCTGACcttgaaaacataaaaaacctCTTTGTC
AGCCTTATACGCAGTAATCTTACTTGAATGTTCCCTTTAGTCTAAATCGA
CTCTAGACTACAATACcagcggcggatctgagggggttcaaatggttcag
ctgaaccacccaaatccttttagtaaataaaaaTACAAGTCTAAATCGAC
TCTGCAATACCCTATGAGAAGCACGAATCCGTttgtggatgccagcagcc
taattCCCCCTTTTCTCTTTTTCCACAGGCTGCATGGAACTACTACAAGA
ACACTGGTATTGTCACTGGAGGACCTTACAACTCCAAACAAGGTTGCCGA
CCATACCAAATTCCTGCCTGTGACCACCACGTTCCTGAATCCAAAAACCC
ATGTCATGGTGAACTTCCAACCCCAAGATGTGAACACTCTTGCATCAGCA
GTAAGTTTATGATCATCAgcaaattttaaatatttaatttgtttactgtc
tttttttatttcagaaaaataaacaatttagGGTTTGAAAGCACTTGGTA
AGCTTTGTATAGCTATCatgttttaaaaacttttttaccttttatctttc
cctAATTCATTTTCTAACCGAACAAGCAAATTAGAATTTATtaccaccca
atacgtcactttttacGTTAAGTAATTCTTCGTCATCACCTTTTTCGTAA
CAACAGTGGAGTcattttaactcgaacctctataactcgagcaAGTTTCA
TGCTCCCATAAGTTAACAATCACGAATTTATGTATGCATGTTATTCTGCG
ACGGAggcggtaaggttctaatttgtctagatcctgactgaTTGACTGAC
TGAGGATGACTGTAAATCACTTTTGCCGTCCTTCAGGGTTGCCACGTCTG
CCAGAAATGTCTGGAATTATGTTAAAAAGTCTGGAAATGTCTGGAAAGTC
TGGAAAACGTCTGGAATTGACATACCTGTCCAGAAAAGTCTGGAATTGGC
ATACCTGTCTGGAAAAACTATAGAATTTGaaggaaatagtcctgaatgaa
GCCTAGTAAACTTTTCGGGAATAGGAAACTTTTATCCTGGCATTtgaaat
tcccaaaaatttctgctcgcttcgctcgcaaccaAGTCTTTATATGAAGT
TCACTCTGAAATTTCTCATTCCGTTGTATTCATCAATCTGGCCTTTCAAA
TGAAGTTAAGGAAAAAAATCCTAATGGATAAAATGTCTGGAAAATATTGg
gttttttgttgaaatatctggaaattttctgacattttcaggtaaaaaat
ctggaaaaacatGGCTTTTGAGACTTAAAATCTGGAATTTTGAACTTGGC
AAACCTGTAGCAACcctgtcctcgattttgcgggtcaaaactgcgggtta
ttccaaatcgcttcagtcactcctACCATTCTCAAAAGtgtaaatacata
aactcgctaatgccCGTGCATATTCGAGttagttatagagactccactgt
atcgGAAAAAAGTATTTGAAAGCATTTTGAAGGTTTCTCCAAACAAAATA
CTTCTAATATCTCTCCGTATTTTCCAGGCTACAATAAGACCTACAATGCT
GACCACCACTTTGCTTTGACCTCTTACGCCGTCTCATCTGACGTCAACGC
CATTGCCAACGAGATCATGACTCATGGCCCCGTTGAAGCTGCTTTCACCG
TCTACGCTGATTTCCCTAACTACAAATCTGGTATAATATGAGATGGACTA
TTTCACGGcagaaatgaatcatgggtagtcaggactgattgcgcttACAT
AATTGACTCCTTTCGGTTAAACCCAAAAACCTCCAAAGCTTTAGACCAAC
AGAACATCGTTTTTACAGCGCTGTGGCTCTGATTAACCTGTCATTCATTT
TGGTCGTAAAGTGTTCTATTTTTGAATAGCTGTGTATGTAGAAGGATCTA
AATGCAACCCATAACTTCTGAGTTTGTTTTGATGGGTTTTGAAGTGCTTG
GCAAAGATTCTAGATTTCAAGTGtacctttttataagaatgacgCATGAA
ATATCAGCCTACAATTTGAACACTATGTCTGAGTGTTTCTTTCCTCTTTC
TCATTTAGGAGTCTACCAACACGTATCAGGAAGTGCTTTGGGCGGTCACG
CCATCAAAATCCTCGGATGGGGCGTTGAAGATGGAACACCCTACTGGTAA
GACATATTTTCGCCTGAATTTTGTAAATACAGTGGGCTCTCGTTGATTCG
AGCTTTTATTAttagaatctttctataattcgaactcttCTTCAGTTCCT
AGAAAGTATGgtcgggtagctcagtcggtagagcattcgccttacaatcc
aagggttgtgggttcgatccccggtcaccgccaactcagcggatgagtag
cttagatTGGGTAttctgatctaggcggtaagttgctgggagctgagagt
aggtgtggtgctccacctcagcattcgatctcccaggtctagcgcaaata
gaaaaggggatagattccctcactcccggctccgccgacagccaccagat
gaatatacttacttacttacttactcttCAGTTCCCGTCAAGGGGAAACC
CCgtgaaatactttctataaatAGTTGAATATTATTGTAAATCAAGCAAA
TTAGACTCTCCGTTCAAGTTGGAATTAACGAGGGTtaactgttttcaaat
tttactgtTGCTATTAAAACTTTAAGGACCTTTTCAAAGAGCACGATTGA
CCTCattttccataactcgaacgacAATGATAGCCCTTCGAATTATACAG
ATATAATGAAATCATAATTCAAACAAGCGACactacaaaattctttcaaa
ggAACAAGAACTTAAAATAACTAACTGTTATGTAGctaaattgcctaaat
atttcaAATGGAGGATATGGTTCAGTAGTCGccacttaattttttttcct
cactaatctctttttatttttgtgttgaTAGGTTGGTTGCCAACTCATGG
AACCCAAAATGGGGAGACAAAGGTAAAACCTTGTTTTCATTTCTAAAGAA
TCCCAATTACAGCAGTTCTAATTGAAATGTCTTTACTACGCCAAAGTTCT
ACTTCTATCAGTCTATACACaactttttcttgtgtttgcTGGCATACTTA
TGAAAAAGACTGAAAACATTGGTCTTTCTAAATCAGGCTATGGTTATACT
TTGTCATTATTTGGCAAAACTACCTGCTATTCTTTTTTAATAGAGACTTT
GTAATAGAAAAATTCACACCCATTCATTgattctctttttgttttagGTT
TCTTCAAGATCTTGAGAGGATCCGATCACTGTGGAATCGAAAGTGGCGTA
GTTGCTGGTATCCCAAATTAAACGCCCTATCATAACTCCCTTCAAGCGCT
TTCAAAAGGGACGCTGTTTTCCCTCGTCATCCTTACGGTTTAAAACgaaa
ttagattttctgtaaaaaaaatgttgattttgtaatgattatttgattga
tttttttttattttgatttgtttattgagttgagaattattttttgttta
ttcgtTCATCTTTTTGCATTGTTCATTGTAATATTTTTACGTTATTTTTT
GTAcgcaaattcaatttcattttcatttttcacgcAGCTTGTAAATTATT
TTAAGCACCTTTTTTACATCTATCGGGGATCGAACGCATTCTTTTAggaa
tcattaattttttgaagTATGTAAATGGTAAAAGTGGTCTCTTGTtagga
ataatttttttcatatgaaTGATTTTTATAGCAACGTATAACACTAAAAT
AAATGTCATGATAccttta

Coding sequence (CDS) from alignment at sc0000261:275180..282648+

>TCONS_00017240 ID=TCONS_00017240|Name=TCONS_00017240|organism=Clytia hemisphaerica|type=CDS|length=8304bp|location=Sequence derived from alignment at sc0000261:275180..282648+ (Clytia hemisphaerica)
gagGATTCAACTAAATACACAGTAACACCAAATAATAAAAATCACCTTGC
CGCCATCATGAAGGTTTTGTTATTGTTTATTGGTGTTGCTATGGTAACAT
GTTTACCAAGAGAAGAATTCCAACATCATATTGATGCTGTGAACAGAGCA
AAGACAACCTGGAAAGCTGGTCACAACTTTGGTGAAGAGACTTCATTGGA
TTATGTTAAAGGGTTGTGTGGTTCTTTGTCAAATCCTGCTATCCGTGCCC
AAATGGAAATGAGAGGAGCACCAAACAATGTTGGTGATATCCCAGAATCC
TTCGACTCGCGTGACAAATGGGACAAGTGTCCATCTATCAAAGAAATCCG
CGATCAAGGCTCATGTGGCTCATGTTGGGCTTTTGGAGCAACTGAAGCAA
TGACTGATCGTATTTGCGTGAAGAGTGGTATGACTTATCACTTGTCAGCT
GAAGATTTGGCAACATGCTGTGATTCATGTGGATTTGGATGTAATGGAGG
TTACCCAGAGGCTGCATGGAACTACTACAAGAACACTGGTATTGTCACTG
GAGGACCTTACAACTCCAAACAAGGTTGCCGACCATACCAAATTCCTGCC
TGTGACCACCACGTTCCTGAATCCAAAAACCCATGTCATGGTGAACTTCC
AACCCCAAGATGTGAACACTCTTGCATCAGCAGCTACAATAAGACCTACA
ATGCTGACCACCACTTTGCTTTGACCTCTTACGCCGTCTCATCTGACGTC
AACGCCATTGCCAACGAGATCATGACTCATGGCCCCGTTGAAGCTGCTTT
CACCGTCTACGCTGATTTCCCTAACTACAAATCTGGAGTCTACCAACACG
TATCAGGAAGTGCTTTGGGCGGTCACGCCATCAAAATCCTCGGATGGGGC
GTTGAAGATGGAACACCCTACTGGTTGGTTGCCAACTCATGGAACCCAAA
ATGGGGAGACAAAGGTTTCTTCAAGATCTTGAGAGGATCCGATCACTGTG
GAATCGAAAGTGGCGTAGTTGCTGGTATCCCAAATTAAgagGATTCAACT
AAATACACAGTAACACCAAATAATAAAAATCACCTTGCCGCCATCATGAA
GGTTTTGTTATTGTTTATTGGTGTTGCTATGGTAACATGTTTACCAAGAG
AAGAATTCCAACATCATATTGATGCTGTGAACAGAGCAAAGACAACCTGG
AAAGCTGGTCACAACTTTGGTGAAGAGACTTCATTGGATTATGTTAAAGG
GTTGTGTGGTTCTTTGTCAAATCCTGCTATCCGTGCCCAAATGGAAATGA
GAGGAGCACCAAACAATGTTGGTGATATCCCAGAATCCTTCGACTCGCGT
GACAAATGGGACAAGTGTCCATCTATCAAAGAAATCCGCGATCAAGGCTC
ATGTGGCTCATGTTGGGCTTTTGGAGCAACTGAAGCAATGACTGATCGTA
TTTGCGTGAAGAGTGGTATGACTTATCACTTGTCAGCTGAAGATTTGGCA
ACATGCTGTGATTCATGTGGATTTGGATGTAATGGAGGTTACCCAGAGGC
TGCATGGAACTACTACAAGAACACTGGTATTGTCACTGGAGGACCTTACA
ACTCCAAACAAGGTTGCCGACCATACCAAATTCCTGCCTGTGACCACCAC
GTTCCTGAATCCAAAAACCCATGTCATGGTGAACTTCCAACCCCAAGATG
TGAACACTCTTGCATCAGCAGCTACAATAAGACCTACAATGCTGACCACC
ACTTTGCTTTGACCTCTTACGCCGTCTCATCTGACGTCAACGCCATTGCC
AACGAGATCATGACTCATGGCCCCGTTGAAGCTGCTTTCACCGTCTACGC
TGATTTCCCTAACTACAAATCTGGAGTCTACCAACACGTATCAGGAAGTG
CTTTGGGCGGTCACGCCATCAAAATCCTCGGATGGGGCGTTGAAGATGGA
ACACCCTACTGGTTGGTTGCCAACTCATGGAACCCAAAATGGGGAGACAA
AGGTTTCTTCAAGATCTTGAGAGGATCCGATCACTGTGGAATCGAAAGTG
GCGTAGTTGCTGGTATCCCAAATTAAgagGATTCAACTAAATACACAGTA
ACACCAAATAATAAAAATCACCTTGCCGCCATCATGAAGGTTTTGTTATT
GTTTATTGGTGTTGCTATGGTAACATGTTTACCAAGAGAAGAATTCCAAC
ATCATATTGATGCTGTGAACAGAGCAAAGACAACCTGGAAAGCTGGTCAC
AACTTTGGTGAAGAGACTTCATTGGATTATGTTAAAGGGTTGTGTGGTTC
TTTGTCAAATCCTGCTATCCGTGCCCAAATGGAAATGAGAGGAGCACCAA
ACAATGTTGGTGATATCCCAGAATCCTTCGACTCGCGTGACAAATGGGAC
AAGTGTCCATCTATCAAAGAAATCCGCGATCAAGGCTCATGTGGCTCATG
TTGGGCTTTTGGAGCAACTGAAGCAATGACTGATCGTATTTGCGTGAAGA
GTGGTATGACTTATCACTTGTCAGCTGAAGATTTGGCAACATGCTGTGAT
TCATGTGGATTTGGATGTAATGGAGGTTACCCAGAGGCTGCATGGAACTA
CTACAAGAACACTGGTATTGTCACTGGAGGACCTTACAACTCCAAACAAG
GTTGCCGACCATACCAAATTCCTGCCTGTGACCACCACGTTCCTGAATCC
AAAAACCCATGTCATGGTGAACTTCCAACCCCAAGATGTGAACACTCTTG
CATCAGCAGCTACAATAAGACCTACAATGCTGACCACCACTTTGCTTTGA
CCTCTTACGCCGTCTCATCTGACGTCAACGCCATTGCCAACGAGATCATG
ACTCATGGCCCCGTTGAAGCTGCTTTCACCGTCTACGCTGATTTCCCTAA
CTACAAATCTGGAGTCTACCAACACGTATCAGGAAGTGCTTTGGGCGGTC
ACGCCATCAAAATCCTCGGATGGGGCGTTGAAGATGGAACACCCTACTGG
TTGGTTGCCAACTCATGGAACCCAAAATGGGGAGACAAAGGTTTCTTCAA
GATCTTGAGAGGATCCGATCACTGTGGAATCGAAAGTGGCGTAGTTGCTG
GTATCCCAAATTAAgagGATTCAACTAAATACACAGTAACACCAAATAAT
AAAAATCACCTTGCCGCCATCATGAAGGTTTTGTTATTGTTTATTGGTGT
TGCTATGGTAACATGTTTACCAAGAGAAGAATTCCAACATCATATTGATG
CTGTGAACAGAGCAAAGACAACCTGGAAAGCTGGTCACAACTTTGGTGAA
GAGACTTCATTGGATTATGTTAAAGGGTTGTGTGGTTCTTTGTCAAATCC
TGCTATCCGTGCCCAAATGGAAATGAGAGGAGCACCAAACAATGTTGGTG
ATATCCCAGAATCCTTCGACTCGCGTGACAAATGGGACAAGTGTCCATCT
ATCAAAGAAATCCGCGATCAAGGCTCATGTGGCTCATGTTGGGCTTTTGG
AGCAACTGAAGCAATGACTGATCGTATTTGCGTGAAGAGTGGTATGACTT
ATCACTTGTCAGCTGAAGATTTGGCAACATGCTGTGATTCATGTGGATTT
GGATGTAATGGAGGTTACCCAGAGGCTGCATGGAACTACTACAAGAACAC
TGGTATTGTCACTGGAGGACCTTACAACTCCAAACAAGGTTGCCGACCAT
ACCAAATTCCTGCCTGTGACCACCACGTTCCTGAATCCAAAAACCCATGT
CATGGTGAACTTCCAACCCCAAGATGTGAACACTCTTGCATCAGCAGCTA
CAATAAGACCTACAATGCTGACCACCACTTTGCTTTGACCTCTTACGCCG
TCTCATCTGACGTCAACGCCATTGCCAACGAGATCATGACTCATGGCCCC
GTTGAAGCTGCTTTCACCGTCTACGCTGATTTCCCTAACTACAAATCTGG
AGTCTACCAACACGTATCAGGAAGTGCTTTGGGCGGTCACGCCATCAAAA
TCCTCGGATGGGGCGTTGAAGATGGAACACCCTACTGGTTGGTTGCCAAC
TCATGGAACCCAAAATGGGGAGACAAAGGTTTCTTCAAGATCTTGAGAGG
ATCCGATCACTGTGGAATCGAAAGTGGCGTAGTTGCTGGTATCCCAAATT
AAgagGATTCAACTAAATACACAGTAACACCAAATAATAAAAATCACCTT
GCCGCCATCATGAAGGTTTTGTTATTGTTTATTGGTGTTGCTATGGTAAC
ATGTTTACCAAGAGAAGAATTCCAACATCATATTGATGCTGTGAACAGAG
CAAAGACAACCTGGAAAGCTGGTCACAACTTTGGTGAAGAGACTTCATTG
GATTATGTTAAAGGGTTGTGTGGTTCTTTGTCAAATCCTGCTATCCGTGC
CCAAATGGAAATGAGAGGAGCACCAAACAATGTTGGTGATATCCCAGAAT
CCTTCGACTCGCGTGACAAATGGGACAAGTGTCCATCTATCAAAGAAATC
CGCGATCAAGGCTCATGTGGCTCATGTTGGGCTTTTGGAGCAACTGAAGC
AATGACTGATCGTATTTGCGTGAAGAGTGGTATGACTTATCACTTGTCAG
CTGAAGATTTGGCAACATGCTGTGATTCATGTGGATTTGGATGTAATGGA
GGTTACCCAGAGGCTGCATGGAACTACTACAAGAACACTGGTATTGTCAC
TGGAGGACCTTACAACTCCAAACAAGGTTGCCGACCATACCAAATTCCTG
CCTGTGACCACCACGTTCCTGAATCCAAAAACCCATGTCATGGTGAACTT
CCAACCCCAAGATGTGAACACTCTTGCATCAGCAGCTACAATAAGACCTA
CAATGCTGACCACCACTTTGCTTTGACCTCTTACGCCGTCTCATCTGACG
TCAACGCCATTGCCAACGAGATCATGACTCATGGCCCCGTTGAAGCTGCT
TTCACCGTCTACGCTGATTTCCCTAACTACAAATCTGGAGTCTACCAACA
CGTATCAGGAAGTGCTTTGGGCGGTCACGCCATCAAAATCCTCGGATGGG
GCGTTGAAGATGGAACACCCTACTGGTTGGTTGCCAACTCATGGAACCCA
AAATGGGGAGACAAAGGTTTCTTCAAGATCTTGAGAGGATCCGATCACTG
TGGAATCGAAAGTGGCGTAGTTGCTGGTATCCCAAATTAAgagGATTCAA
CTAAATACACAGTAACACCAAATAATAAAAATCACCTTGCCGCCATCATG
AAGGTTTTGTTATTGTTTATTGGTGTTGCTATGGTAACATGTTTACCAAG
AGAAGAATTCCAACATCATATTGATGCTGTGAACAGAGCAAAGACAACCT
GGAAAGCTGGTCACAACTTTGGTGAAGAGACTTCATTGGATTATGTTAAA
GGGTTGTGTGGTTCTTTGTCAAATCCTGCTATCCGTGCCCAAATGGAAAT
GAGAGGAGCACCAAACAATGTTGGTGATATCCCAGAATCCTTCGACTCGC
GTGACAAATGGGACAAGTGTCCATCTATCAAAGAAATCCGCGATCAAGGC
TCATGTGGCTCATGTTGGGCTTTTGGAGCAACTGAAGCAATGACTGATCG
TATTTGCGTGAAGAGTGGTATGACTTATCACTTGTCAGCTGAAGATTTGG
CAACATGCTGTGATTCATGTGGATTTGGATGTAATGGAGGTTACCCAGAG
GCTGCATGGAACTACTACAAGAACACTGGTATTGTCACTGGAGGACCTTA
CAACTCCAAACAAGGTTGCCGACCATACCAAATTCCTGCCTGTGACCACC
ACGTTCCTGAATCCAAAAACCCATGTCATGGTGAACTTCCAACCCCAAGA
TGTGAACACTCTTGCATCAGCAGCTACAATAAGACCTACAATGCTGACCA
CCACTTTGCTTTGACCTCTTACGCCGTCTCATCTGACGTCAACGCCATTG
CCAACGAGATCATGACTCATGGCCCCGTTGAAGCTGCTTTCACCGTCTAC
GCTGATTTCCCTAACTACAAATCTGGAGTCTACCAACACGTATCAGGAAG
TGCTTTGGGCGGTCACGCCATCAAAATCCTCGGATGGGGCGTTGAAGATG
GAACACCCTACTGGTTGGTTGCCAACTCATGGAACCCAAAATGGGGAGAC
AAAGGTTTCTTCAAGATCTTGAGAGGATCCGATCACTGTGGAATCGAAAG
TGGCGTAGTTGCTGGTATCCCAAATTAAgagGATTCAACTAAATACACAG
TAACACCAAATAATAAAAATCACCTTGCCGCCATCATGAAGGTTTTGTTA
TTGTTTATTGGTGTTGCTATGGTAACATGTTTACCAAGAGAAGAATTCCA
ACATCATATTGATGCTGTGAACAGAGCAAAGACAACCTGGAAAGCTGGTC
ACAACTTTGGTGAAGAGACTTCATTGGATTATGTTAAAGGGTTGTGTGGT
TCTTTGTCAAATCCTGCTATCCGTGCCCAAATGGAAATGAGAGGAGCACC
AAACAATGTTGGTGATATCCCAGAATCCTTCGACTCGCGTGACAAATGGG
ACAAGTGTCCATCTATCAAAGAAATCCGCGATCAAGGCTCATGTGGCTCA
TGTTGGGCTTTTGGAGCAACTGAAGCAATGACTGATCGTATTTGCGTGAA
GAGTGGTATGACTTATCACTTGTCAGCTGAAGATTTGGCAACATGCTGTG
ATTCATGTGGATTTGGATGTAATGGAGGTTACCCAGAGGCTGCATGGAAC
TACTACAAGAACACTGGTATTGTCACTGGAGGACCTTACAACTCCAAACA
AGGTTGCCGACCATACCAAATTCCTGCCTGTGACCACCACGTTCCTGAAT
CCAAAAACCCATGTCATGGTGAACTTCCAACCCCAAGATGTGAACACTCT
TGCATCAGCAGCTACAATAAGACCTACAATGCTGACCACCACTTTGCTTT
GACCTCTTACGCCGTCTCATCTGACGTCAACGCCATTGCCAACGAGATCA
TGACTCATGGCCCCGTTGAAGCTGCTTTCACCGTCTACGCTGATTTCCCT
AACTACAAATCTGGAGTCTACCAACACGTATCAGGAAGTGCTTTGGGCGG
TCACGCCATCAAAATCCTCGGATGGGGCGTTGAAGATGGAACACCCTACT
GGTTGGTTGCCAACTCATGGAACCCAAAATGGGGAGACAAAGGTTTCTTC
AAGATCTTGAGAGGATCCGATCACTGTGGAATCGAAAGTGGCGTAGTTGC
TGGTATCCCAAATTAAgagGATTCAACTAAATACACAGTAACACCAAATA
ATAAAAATCACCTTGCCGCCATCATGAAGGTTTTGTTATTGTTTATTGGT
GTTGCTATGGTAACATGTTTACCAAGAGAAGAATTCCAACATCATATTGA
TGCTGTGAACAGAGCAAAGACAACCTGGAAAGCTGGTCACAACTTTGGTG
AAGAGACTTCATTGGATTATGTTAAAGGGTTGTGTGGTTCTTTGTCAAAT
CCTGCTATCCGTGCCCAAATGGAAATGAGAGGAGCACCAAACAATGTTGG
TGATATCCCAGAATCCTTCGACTCGCGTGACAAATGGGACAAGTGTCCAT
CTATCAAAGAAATCCGCGATCAAGGCTCATGTGGCTCATGTTGGGCTTTT
GGAGCAACTGAAGCAATGACTGATCGTATTTGCGTGAAGAGTGGTATGAC
TTATCACTTGTCAGCTGAAGATTTGGCAACATGCTGTGATTCATGTGGAT
TTGGATGTAATGGAGGTTACCCAGAGGCTGCATGGAACTACTACAAGAAC
ACTGGTATTGTCACTGGAGGACCTTACAACTCCAAACAAGGTTGCCGACC
ATACCAAATTCCTGCCTGTGACCACCACGTTCCTGAATCCAAAAACCCAT
GTCATGGTGAACTTCCAACCCCAAGATGTGAACACTCTTGCATCAGCAGC
TACAATAAGACCTACAATGCTGACCACCACTTTGCTTTGACCTCTTACGC
CGTCTCATCTGACGTCAACGCCATTGCCAACGAGATCATGACTCATGGCC
CCGTTGAAGCTGCTTTCACCGTCTACGCTGATTTCCCTAACTACAAATCT
GGAGTCTACCAACACGTATCAGGAAGTGCTTTGGGCGGTCACGCCATCAA
AATCCTCGGATGGGGCGTTGAAGATGGAACACCCTACTGGTTGGTTGCCA
ACTCATGGAACCCAAAATGGGGAGACAAAGGTTTCTTCAAGATCTTGAGA
GGATCCGATCACTGTGGAATCGAAAGTGGCGTAGTTGCTGGTATCCCAAA
TTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009643	XLOC_009643	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00017240-protein	TCONS_00017240-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000261	supercontig	sc0000261:275180..282648 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
141.161	138.494	147.383	144.868	38.7092	33.1031	59.0318	63.4176	150.652	141.462	189.928	167.781	182.613	208.992	221.505	227.052	93.028	96.1623	284.564	297.281	56.8746	65.354	83.4251	85.8	116.985	117.307	40.4631	55.208	72.0381	58.1701

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000668	Peptidase_C1A_C
IPR012599	Propeptide_C1A
IPR025661	Pept_asp_AS
IPR000169	Pept_cys_AS
IPR025660	Pept_his_AS

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis
GO:0050790	regulation of catalytic activity

Vocabulary: **Molecular Function**
Term	Definition
GO:0008234	cysteine-type peptidase activity
GO:0004197	cysteine-type endopeptidase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0050790	regulation of catalytic activity
molecular_function	GO:0004197	cysteine-type endopeptidase activity
molecular_function	GO:0008234	cysteine-type peptidase activity

Blast

[Close]

BLAST of TCONS_00017240 vs. Swiss-Prot (Human)
Match: CATB (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 358.607 bits (919), Expect = 1.370e-119
Identity = 176/305 (57.70%), Postives = 214/305 (70.16%), Query Frame = 2

Query:  131 IDAVNRAKTTWKAGHNFGEETSLDYVKGLCGSLSNPAIRAQMEMRGAPNNVGDIPESFDSRDKWDKCPSIKEIRDQGSCGSCWAFGATEAMTDRICVKSG--MTYHLSAEDLATCCDS-CGFGCNGGYPEAAWNYYKNTGIVTGGPYNSKQGCRPYQIPACDHHVPESKNPCHGELPTPRCEHSCISSYNKTYNADHHFALTSYAVSSDVNAIANEIMTHGPVEAAFTVYADFPNYKSGVYQHVSGSALGGHAIKILGWGVEDGTPYWLVANSWNPKWGDKGFFKILRGSDHCGIESGVVAGIPN 1036
            ++ VN+  TTW+AGHNF     + Y+K LCG+        Q  M         +P SFD+R++W +CP+IKEIRDQGSCGSCWAFGA EA++DRIC+ +   ++  +SAEDL TCC S CG GCNGGYP  AWN++   G+V+GG Y S  GCRPY IP C+HHV  S+ PC GE  TP+C   C   Y+ TY  D H+   SY+VS+    I  EI  +GPVE AF+VY+DF  YKSGVYQHV+G  +GGHAI+ILGWGVE+GTPYWLVANSWN  WGD GFFKILRG DHCGIES VVAGIP 
Sbjct:   31 VNYVNKRNTTWQAGHNF-YNVDMSYLKRLCGTFLGGPKPPQRVMF---TEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 331

The following BLAST results are available for this feature:

BLAST of TCONS_00017240 vs. Swiss-Prot (Human)

BLAST of TCONS_00017240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CATB	1.370e-119	57.70	Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3	[more]

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TCONS_00017240 (transcript) - C. hemisphaerica