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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017237 ID=TCONS_00017237|Name=TCONS_00017237|organism=Clytia hemisphaerica|type=transcript|length=1235bp
ATGTGATAATTCTCTCAACCTAACCATTTCAGCTATTGAAACATAATTGT
ACCTCAGAGGCTTGGGTTCaaatactttcactttcatttttgctTTCCCC
ACCTCAATTTTCGCATCGATAGCAGGCAATCAGTAGTCATCAAAGAAGCA
TTCTTACTTATTACATAAATTCAACTGCTGTTTAGACAAAGACTTGTCAG
GATGAATGCTCTGGCATTGTGTTGTCTATTATCAGTTGCTTTTGCAAAAC
CATCACAAAATGGTTTATACAACCCTTTGTTTCAAGATATCATTGATGAA
GTCAATAGTAAACAAACAACATGGAAAGCCGGTCATAATTTTGATGCCAA
TGTTGACCATGCTTATTTGAAGCATTTATGTGGAACTTTTCTTGATGACC
CCATCAGAGAATCATTGCCAGAGAAACAAGATTTTGAAACAGTTGAGCTG
CCAGATGAATTTGACTCTCGTACAAAATGGGGAGAGATTTGTCCAAGCAC
AAAAGAAGTCCGTGACCAAGGAAACTGTGGCAGCTGCTGGGCATTTGGTG
CTGTAGAAGCTTTTACTGATCGTATCTGTATTGCATCGAACGGTGAAAAG
AAACCTCACATCTCTGCTGAAGATCTTCTTTCTTGTTGTGGTTTCTGGTG
TGGAATGGGTTGCAATGGAGGTTTCCTCGGAGGTGCCtggaactttttca
aaagaactgGATGTGTTACCGGTGGACAATACAGTACCAAGGAAGGCTGT
AGACCATACAGCATCCCAGCCTGTGAACACCACACTACTGGACACTTGAA
ACCATGCTCTGGAGATTCTCATACaccaagctgtgagaaagaatGCAGAC
AAGGCTACAATGTCAGCTACACTGAAGACAGACATTACGTTAAAACCAAA
TACACTGTTTCAAGCGACCAAACTAAAATCATGACAGACATTATGACCAA
TGGACCAGTTGAAGGAGCTTTCACTGTCTATGCTGACTTCCCCAACTACA
AATCAGGTGTTTATCAACACACCACTGGATCACAACTTGGTGGTCATGCC
ATCAAAATCCTTGGATGGGGTACTGAGAGCGGAACACCTTACTGGTTGGT
TGCCAACTCATGGAATCCAGACTGGGGAAACAAAGGGTTTTTCAAGATTA
AACGTGGAGGAAATGAATGTGGCATCGAATCCTCAATCACTGCTGGAATC
CCTGcataaatttaaaatgaaaatgatttgttttt Run BLAST on NCBI transcript from alignment at sc0000261:256424..272785+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017237 ID=TCONS_00017237|Name=TCONS_00017237|organism=Clytia hemisphaerica|type=transcript|length=16362bp|location=Sequence derived from alignment at sc0000261:256424..272785+ (Clytia hemisphaerica)
ATGTGATAATTCTCTCAACCTAACCATTTCAGCTATTGAAACATAATTGT
ACCTCAGAGGCTTGGGTTCaaatactttcactttcatttttgctTTCCCC
ACCTCAATTTTCGCATCGATAGCAGGCAATCAGTAGTCATCAAAGAAGCA
TTCTTACTTATTACATAAATTCAACTGCTGTTTAGACAAAGACTTGTCAG
GTAAagcttttcattaaatttgatgttatttaagattttttcatttccat
aagCCCTCCTAGGCACACAAGcttggacattttcttttttgatgttgaTG
TTTCTATACATTTTGgacatttccaaatgaattatttttgtgtcttctca
caaatccaaaaatataATTAGAAGATTCAGGATAGGGGGGGTGCTTCAAA
AAGGTACGGTCAACAGCTCTAACCTGGGACTATCTggcaaaacatgggac
ggcaattcggggCGGCCACCATTATTTCACCACCAACGACcacaaacctc
caaagtcaatTAATTAACACAACCGCAAATCGTAGATAGCATATAATGTG
AATACACTACACTCACCAGGTTTGCTTTCATACTGTAAAAGGAACAAATA
TTTGGGACGAGTAGAAATGCGTGAATGTGATCGCGCGCATTCGcgcacaa
gtgttacgcgtaagccaaatcgcgtattacgaacaacctctaaattgccg
agtacaggagaaaaaatcaaaattcaaaatggcggccaagcccacgctga
taactatcaaaaatctttgtttttcaatcagctaaattgcagctcaataa
atcaatgaaataatttgaaataaaaagtaaacaaaccttgaacctttcat
gaatccaaataaataaaagtattcatctaaagtgaagattNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNtgccaactaaaaatttctctgcggggtcactggcaaggagttacga
cttcagacttaagattccaattcttgtgtaggctgcaactacactgccaa
ttgatctgtattacaaatacttccaaatgggtccataagttaagaaaatg
aaattatcatctagcacgggggttttgtttttaaaaacaaacttcaaaat
aaaattgttaatgaacttgttacttaaaaaatatcacttacttacataat
ttatttatggtataacacccctttcttaaataaatggcctcttaaagtct
tttatgtttgccgcaagaagggagaaaaatttaatttgacccccggtttt
ttctctctttttctaacTACCGTAGGTCGGGGAAACTTCGGAATGAAGGA
AACTTCGGACTAAAATCTTTAACAAGTGATTACTTCGCGAGGATGTAACA
TTTTATcgtacttttttctttcacagtTCAGAAATGAAGCACACTCGACG
ATACATATCAAGCGACGGAAAGCCgaaagaaaaacgaagaagaaattgaa
gaaaaccaCGATATTTTACCATCTTCCATTGTAAAGAGATTTGTTGGATA
TCTAAAGCGGCAACCTCATAATTTTATTTACGTGATGAAAAGAGGAGACA
TTGAATGTAACGTTAAAAGTTATTTGGGCTAAAAATATGCATTCCTTAAT
CTTCAATAGCTCTTCAAAGTTGCTCTATAAATTCGCCGAGAAAGTCGCTG
CGAGAATAGCTTTACCGTCAGCCGAGAAAGATCTTCTTTAAACGAATCCC
AAGAGAAACATAATGTGATTTCGAAGCAATATTATAAGAACTTTGTTCTG
ACGTCACCAGACATTGATGATAAACGTGCAGATAATTTGGTTCTTTATTA
GTATAAAGTAAGGTAAagggaaaaccctttttttattagaagtcGATGAT
GGTGGATTTTCTTCATTAGAACATTAGAGTATGTCAAATAATTCTTGGAA
AAAGCTTGCTTGTAAGTCGCTATCTGATCCACATAATACGTTGGATGCAA
ATTCTAATGATTTAAATCTAAGATTATCATAACTAATTAAAGAGCCTCCG
GTACACTTGAAGACGCATTTGTCATACCCTTTCCATGGTGGTATGACATA
CAGTAGTGCATGtattttaggcgtacaaactttcgcgagcagaaactttc
gcgaatcgttggatataaatgaaaacttttgaatgaaaattgctttaaaa
tggaaaaatatacCTTAAATCCGATAAAGACTGTTGCTCTTCGACTATAA
AAGGTATTAAACTATAAAATTatgccaaaaatttcaaatttgacgATTCG
TGAAAGTTTGTTGTAAACTTTGCGCTATTTCGGCCTCGCAAAACTTTGTG
CTCGTTTGTACGCTTAAAGTGATCAGTGATTTGGCCAGATCCAGGTGCCT
AATTTCTCCAAAATAAATATAATCTTTTTATTGCGGCTTTGACGTGAAAA
CTACCCCTAAGTTATTATCATTCAGCCCCTTAACGATAGCTAAAATAGGT
TAAACACTTTTATCATTTCGGTAGTCATAACAGGGGTGTTTCCACTTAAA
CATTTTGTATTGAATGGTTGTGATAGAACCTGTTTACCTGTTCCTTCTTT
GCCTAATGGTAATGAATGTGTCCCCGGTGAAAAAAATACTGCAAATTGAT
AATCGAAATATCATTAGCAAAAAGGCTGCTTTGGTGATATGACAGCCGAT
GGTTCTTACAGCTGGCTTACAAATCATTTTGACTCAAGAAACCTCTGTAT
CTATCACTATGTTACTGGAGGGTTATAGGTGGTTTTAGACCATatcgaac
ttatcagaggaaccagatatttgtaattgtaaattcattgtcttttaacg
agcgttgcactccttcgtaTGCTTCCGacatacttgctctattgtcttaa
atgcGCAAGTGGGTGTATATAGTCGATATATTTTGGCTGTATTAACAAAC
TAAATTTCGTAATCGTAACATTTAAcctttaactcaaatcaaaagaCGAT
AAGTTCGAAAATTTCAAACCCGTCAAATGGTATGTgcttattacacccct
gtgtcacagatcctccagccccactggaaaatttggcaaaaataataatg
gaaatttttatcccctctgttggaaaaaaatccaccgGGGCCActgtgag
ataggggtgtcTTATTTAAAATAAGGTAAGACATATACAGCGGTAATGAA
GCAAAATTACGTACAATATTATGTTTCTAGTCTACCATTGAAGCTCTTAC
TTACTCGGTaggtattttgtatttatttcttttcatctCTTTTTAATCTA
ATCTATAAAGCCTGCATCGACGAACTTATGAACCGCCCGTAGTCCCACTG
GTAACAAAACATTTAATTAGTATTTAATTCGTGATTTACAGTACGCATTT
CGTTGCAAGCCTTGTGTAGTATATTGGGTTACTTTTAACCACGATCTTGA
TCGCGCTAACTTCCTCGCACGTCCACCTGGTCCATCGTCGAACAATTatc
taaatcaaaattgtaGTCTACTGTTGAAtagaaagtcaattttctatCTC
TTGATAAATTGGAAACCTCATCAAAGCCTGGGATTTATTATTCCACTGGC
TGTGTAGAAAAAAGCAGTGGCCTCCTAGTATAGTCAAGTTGAATATGAAA
GTCAACAGTGACTTAAGTTATTTAAAGCGATATTTTTGGCAAACATTAAA
TTTCACTTGACTTGTATAAAAAACACCCATTTGTCCACAGCGATGGCTTT
ATGCTGCTTTGATTCCGATTTCACTGAAACTACTAAAGTGCATGTATACG
TAATACGGGAATGTATACAGGAATCAAAACTAAATTCCCATATtgcgaaa
aataaaacttgaaacagAACATGAACATttagctctctcgcttatatCTC
TATAACACCCATGTTTCACACAGCCCCGGTGGATCTTCACTCAAAACAAC
ACATAAACAAGACGAcatgaagtcgaaaatttcgcctagaatttgaaccg
catgggaaaaagaagaagtagagattaaagctaatctgaaatctacttta
catcgagccttgatgaaacaattttacaagaacaaggaggcttaaaatcg
ctaaaaaaataagaccaatttaagaacaattgctgtttaatttttaagaa
ctcttacaaagtatatgcttataaaaaataaatatgctcacattgtgcgc
cgtcccttgtttactctgtaagaactaattaccgaaagatatatcaccgt
ctatcatgagttattgagttaattcttataaagtatatgcttacaagaaa
agtaaaaatactCATACTttacgccatcccttgtttactttgtaagaact
aattaccgaacgGTAtctcaccgtctatcaagagttattgagttgattct
tataaagtatatgcttacaagaaaagtaaaaatactCATACTttacgcca
tcccttgtttactttgtaagaactaattaccgaaagatatatcaccgtct
atcatgagttattgagttgattcttataaagtatatgcttataagaaaaa
taaatatgctcatattatttgctgtcccttgtttactttgtaagaactaa
ttaccgaaaggtatatcaccgtctatcatgagttattgagttgattctta
taaagtatatgcttataagaaaaataaatatgctcatattgttTGCTGTC
CCTtgtttactttgtaagaactaattatcgaaaggtatatcaccgtctat
catgagttattgagttgattcttataaagtatatgcttataagaaaaaaa
ataaaaaaacaatcagTTATATGCTTAAATTTGTGGAATTAATATTCGAG
CAAAAAAAACGCGACTTATGATTATCTCCATAGTATATACTGAACCAACT
AACAAGAGAACGCCCGGGTCAAACGCCAACGCCATAATCTTCGCCCCAAA
AAAATTCTCCcccgccgccgccgcagaaaggctatcgtaatactttcgct
aagcgaaattaaaaatagggttgaaatttttatcaaaatttgttgGGGAT
CGTTTTGAAGtgcttttttcaatttcctaatgaggttgaaattgaaaaga
tgTTTCCCCACCGGGTGCGAAATCTCGGTCCAATTTTTCAAGTGGAGCGG
GATTCGACACAAGGGTGTTTTAAAAAGACCGTTGttactttatttgaaag
tcgGAAAAGTTTATGGGCTTCCGAAAAAAATAATACTCAGAACTTAGCAT
CCAAAAGTCCcgcgaaaaataagaaaaatatctaaTGAAATATAACGATA
TGATAGTATCATAAGGAAACGAGACAGTCTAATtgaaaaagttcttataa
aacgtGTTTGTTTCACCAATTCACTCTGAGGAAGACCCTCTCATCATGTG
TTTAGCGTCCATAAAAACTAATGATTGGTTGATTAGTTTTATTATTCACA
CTTCCATCGCACGCCCAGAAaattaatgaccaattaagcgcAATTCGTAT
CTTTCTGTCGTTAATTTCTCGGCTCACACGAATTTGTCTCTtggtatttt
tcaacaaatggcacttcaaattcaatgtttttgttttgaaatagcGCAGT
ATCCAGTCATGATGGTAGATCGTTGGAGTGACGGCAAATCATTCCGAAGT
TTAACATTTTAAGAAGTTGACCTTTCTGAAATTGAGATGGTGTTTCTTTC
ATAATGACCTGGCTGATTTACTTGTaacgattgttttctgaaagacAATA
ACACAAATGTTATGTACAGTAAGTTTGGTTGATCTTTTTTTCATATTCCa
ggagaaataaagaaaaaacttgaaaatctgtCCGAAGTTTCCCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttcccgcgtgttagt
gtagacacaactttaatctggggaaatgaagcgttttcattggtctaaaa
tcacggatgatcacgtgaccagaatttttatccagggaaatgccgtggcg
gcaatgttttactttagtgagattgaccattttgttgttttgatttgagc
gggcgaaatttctgtacaaaccaaaatatggcttcgttggaataccggtt
aaAACACTTGTGAAGCAAGCAAGCATCCAAACACAGACAGTCTGTGTCAC
AGATATCAAAAGAAGTCTGTTCTTCCGCAGAAAATTGTGAGATCTGCTAT
CGACACTCTGTCACTTTGACATGTCAATCAATCGCACACGCTGGAAAAAA
GTctctagagaaaaacaacacaaaacaaaaaatgtttgataTTTGCTatt
tccagacggtgtcaatcgaacgaatcgaatgccgaatcaattgaacgcaa
ttgaaaaCAATCTAATAATTGCAATacgattgtcaaacgcaatcaaatcg
caatcgaatattacccaggatttgccgttcgattgcttcaatTATGTTTG
ATTGTATTCAATTACGTTCAATATtacgttcaattgattcaattgtatta
gattttattcgctttgtcAGGCTAGCTCtgaagctctaaaacagcatcta
ataacttgaaaaccagaatatgattcttcaatcaGTGAGggtggaacttc
gatttttgaggattacgattttactagttttttagcgatttttgcctcgc
taacccaaatctcgcaacctctttaccttaaggaagatcgaaattcgaac
gcatagcagaaatttgttcatcttcacaggatcgattctcaacaacaaaa
tacatcttttggtctttgggtttgtttctgacatttttccttcaaagaat
atcgatcactttcctttttccCTTGAGCGCGCTAGAAAAAATGATAAGCT
CGCGTTTTCGCGCGgtcgaataaagatgaggcggcaatcttgcactgagg
gtgctacttagtttccgccctattttgcgcccacgataaaatggtccaaa
cacggggctattccaaatgataaactatgtcgttatgtaagtgtttattt
tctgagagatacaaatagtatattgaatattattaacttatttatttatt
tatttatttatttaagtatttttgagcgcaaatttaaatataggTTGAAT
ATTacgtttattcctcaaaccccccggaaaagtttttttgctgacttagc
tattttacaaatctcaaaaaagaactcccataggaatttcAATACCTTac
cccgattggttaattttggaACGGCTTGAAGAAAGTATAATGGCAGATGA
Ttggataattttaaaagtttctgaggaaatgtgtgtaatttatcgatgtt
gatggcttgttgattcttaaaGAAAGTAGAtgacaggtatagctttttct
aatcctggaatatcgaggttccagctacactgtcaatgggaatcaaaact
ataaagtgcacttaccaacatcaatttgtcagatctaacaaaattaataa
ccgcactatcatcattgacaataaaacaaaccaatttTCTGTCAacagcc
ttgtaaacattccaacaacttccagcgaaatgatctatcacagtttagtc
taccatttttagtgcggtccgaggattgagctgagaacgcctgcgcgggt
gaaaaacttcaatctgtcaatcattttctcaagcaaagagttcgcggagc
gattctagctttaccaTAGTGCCgtggatcatcaatggatagtattcaat
catcattatccctttattttcattcctagaacttttgcaaaaaaaaaatg
aaaaaaaaaatagaaaagttgtattttttactgctctattcacatactga
atttgaaaaatcttctatgtggcgtttttttgcagatgctaatcaaaaat
agtgtgacattgtaaaaaatgctcaaaatcaactttttggaaTAACTCTT
CATATTTTTTGAGTCAGCCATAGAGATTTCACAGGGTAATAGACCTCAAC
GTGGagatatgattaaaaaaaaaattttgttatttgagTCAAAATTGTGG
CTGCAGATAAaaaattctagtttttttttaaagtgtaaGCCACACGATAT
TGAAAAGTGATCTCTGAATGGGACCTTCTAGACTTGAAAGAAGAAAGgct
gaattttccaaaaagtgttaAATGNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCCAC
AAaatttcgttctttttgcaaCAGGTAGATAAATTATTCAGCTTAACCAT
GGATGTATTTTGACATGTAAGCCACATGATGGCCTCATTCTATGAGTAAA
ATAGTGGATGACataaaaaatgtcacaaaacaggggttaatttttgatta
gcatctgcaaacttcaaaaaactgatttttgtcccacctttgcaggactt
tggcttaagtgcttgcgtgcagcataagGTACAAAGTCCAAGCATgcatt
tcccgtaatttttgtatgaagagttaggtctatactgtttgTACGGTACT
TAGGCACTCAGCCGCCCATACTCTagaaagctctaacagagtgaaaaact
catcaaacataatcgtaatcgatcgaaatcgaagattaatcgaatgtaat
tgacaatcaatcgaacatagtcaactatcaatgaACCAAtttaaccttac
tcgaacgcaatcaaatattacccagtgttaaaagttcttccgtctcagac
ggatttccgtctcagagAAGTATATAGAGAgacttttccgtctcaaaatc
ctgcataattcaccaaaagttcaagaatatgtgctaatttgctgtgtaaa
atccattttccgtctcagacgaaaatcttgctttgaccactgattACCCA
GGAATCTGCCGtgcgattgagattcgattacaaTCTACAATCCAATCGCA
ATTATTCTATCGCGTTCGATTAtgttcaattggttcgattgcaatttttg
tttgaagttgttcaattgacaccgtctggatattTGATGTGATTAAATTG
TGTATTTAGATTGTTAAAATTACTtcttcaaattatgtacttttaaaatg
ctttaaaaatacatttggttGTGATTATGGGATGGTAAAAGTTTAATTGA
TAAACTTGattgaagtatcaaaacaaatttgttaacACCCAGATGGGAGT
TAATTTTTTAcaacaaaacatcaaatcaaactttgaaaaagctTAAACCA
AAGGTGCTACACTCCCGAGGGTAAACTAGTCAATTTCATAGAGGTAATGA
GAAATGTACAGACAtcgaaaaaatataattcacAATGGCGTCtgaaatta
aaactgaaaaaagatgAGTATGATTACCATTGTACAGAAATACCTCCTTA
GCCCCTGTTCCGATTTTTCAGGTTATAATTTTTGGATTTGTGAGAAGACA
TATATTATTTTAAACCCCATCTGGGTGTTCctaaagggctacttagacta
cacaatatattgacaaaCAATATTTCACAATATAGTTTTCAGATCGTAAT
GTACGGAGTAAAGAACAGGTGctttattataaaaagaaatttatattgtt
ggaatattgcaaattgaGATAACTTGCAGATACCTTATCAATATATTTCT
Aacactcagcaatatatcatcaatatattgcctgacaatatattgtgtag
tgtatgtagcccttaaaaGGTAGGGTACCCCAATGGGGCCCTTAATTGAG
CTACTTATTGGGGTACCCCTTTTGCCCTAAATTTTACAAACTGCTGATGC
TCGAGTTCATGATAAAATGATACTAAAACCCCTGTTTATTAAaacaattg
gcaaaaatcaaGTAATTTTTTGAACTGTCATCTctgtttcaaaaagattc
actactcaaaaaagcaaaataaaataaaaaattcaaaattatgtCTGAAA
GTATTTTAATTCCATACTGCTATACTATAACTGTAATTGATATTTATTAG
AAGCTAAATTCTAATTATTAGCTGTTAAAAAGTGCTGTAATTTTTTGCAG
GATGAATGCTCTGGCATTGTGTTGTCTATTATCAGTTGCTTTTGCAAAAC
CATCACAAAATGGTTTATACAACCCTTTGTTTCAAGATATCATTGATGAA
GTCAATAGTAAACAAACAACATGGAAAGCCGGTCATAATTTTGATGCCAA
TGTTGACCATGCTTATTTGAAGCATTTATGTGGAACTTTTCTTGATGACC
CCATCAGAGAATCATTGCCAGGTACACATGATTATCACTTGATCAatatt
tatcttttcaatatttatctTATACAagttttttctttgcttttacTTTG
GAAGTTAAATAATATACTTTGAGTGTTGGATGACACATGTGACATTGACA
TGAGTTCTATAAGACAAGAATTGATTGAGTTGATACGGTCTGAACACTCT
TATATTTCATTAGTGTCGTTTTTATTCTTCACTTTGGGCATTTTAAGAGA
AGTCTCTAGGAACACTCTTCAGATAAAACATCTAAATATATTTTAGAGAA
TAGGGGATAATTATTCTTTCATGATATTTTATTTTAGAGAAACAAGATTT
TGAAACAGTTGAGCTGCCAGATGAATTTGACTCTCGTACAAAATGGGGAG
AGATTTGTCCAAGCACAAAAGAAGTCCGTGACCAAGGAAACTGTGGCAGC
TGCTGGGTATGTTGTTCaaagaatttaaaacaaaatctaaAGAGCACTGA
AGGGATTATGCCATTGGCCGAAAAAGGCTTTCACTATTTATGCTTCGTCA
TATGGGAAGTTGTGTTTGAGGGCGTTGCAGTTGTGTCTATCGCTTTTGCC
TAACCTCACAATTTATTCTAAAGATCTTAGGATTAGGAGTGtcttgtatt
ttttataacAGAGATGGCTAACTAATTCATTCCTTGAGCTGATTTTTTGT
ACCTagcaaaattttatatattttttcacaaCAGGCATTTGGTGCTGTAG
AAGCTTTTACTGATCGTATCTGTATTGCATCGAACGGTGAAAAGAAACCT
CACATCTCTGCTGAAGATCTTCTTTCTTGTTGTGGTTTCTGGTGTGGAAT
GGGTTGCAATGGAGGTTTCCTCGGAGGTGCCtggaactttttcaaaagaa
ctgGATGTGTTACCGGTGGACAATACAGTACCAAGGAAGGCTGTAGACCA
TACAGCATCCCAGCCTGTGAACACCACACTACTGGACACTTGAAACCATG
CTCTGGAGATTCTCATACaccaagctgtgagaaagaatGCAGACAAGGTT
TGATCTATTTTCATCATGTGGAAAGATTATTTATCTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATTATTTAATAATCC
AAATTATATTCTAGGCTACAATGTCAGCTACACTGAAGACAGACATTACG
TTAAAACCAAATACACTGTTTCAAGCGACCAAACTAAAATCATGACAGAC
ATTATGACCAATGGACCAGTTGAAGGAGCTTTCACTGTCTATGCTGACTT
CCCCAACTACAAATCAGGTTTGAATTTCATGGAAGATTTGAAATATGTAG
AGCTGGCTCACTTATACTGGATATACTCTTAAAGCGGTAAAAGATGTAAA
TTACCcatattttaaaagttctccTGTTTGATTTGGACAGTATTTCAAGT
AGAGTTGTCtgatgaaaaattaataaataaataatgtaTCTTTAACTTTG
TGTGATCAGTGTTAGTGATGCCaacaaaataacatttttcttttttgtta
taGGTGTTTATCAACACACCACTGGATCACAACTTGGTGGTCATGCCATC
AAAATCCTTGGATGGGGTACTGAGAGCGGAACACCTTACTGGTAAGGAAA
ATCTATATCGAAATTGTGACCttaataataaatttttttttgctgcaAAT
AGTTTCAGACAGTTTCAATAAAACTTACATTAGAAAAGAACCCAACATTT
ATCTCCTAAAATCCATGTAAGTATCCGGATTTCAATTTTGCAAGCAGGTA
TTTGCAACTAACTCATTTTTTCCTGCCTTTCATCAGTATTACAAGACTTA
GATAGCCGAAAGTAATATTTTAATCTATCATTTATGTAGGTTGGTTGCCA
ACTCATGGAATCCAGACTGGGGAAACAAAGGTTCGTTTTCTGCtcagaaa
gaatttttttttctatctgaGGAAACTGGGTTCGAGATTACAGGTTAATG
TCTGACAttcttaaagattttaaaaatcttgatgttatttccttgtaaat
tcattcCCAGGCCCTTCGGAAGCCAACTGCACATTCaagggttgataggt
gtattaCTTTGATAGCGTATGAAAAGTGAGAAGGTTGGAAAtagtttata
tattatattggcTTCTTTTTTTAAAGGGTTTTTCAAGATTAAACGTGGAG
GAAATGAATGTGGCATCGAATCCTCAATCACTGCTGGAATCCCTGcataa
atttaaaatgaaaatgatttgtttttAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCACAACAGGCATTTGGTGCTGTAGAAGCTTTTACTGA
TCGTATCTGTATTGCATCAAACGGTGAAAAGAAACCTCACATCTCTGCTG
AAGATCTTCTTTCTTGTTGTGGTTTCTGGTGTGGAATGGGTTGCAATGGA
GGTTTCCTCGGAGGTGCCtggaactttttcaaaagaactgGATGTGTTAC
CGGTGGACAATACAGTACCAAGGAAGGCTGTAGACCATACAGCATCCCAG
CCTGTGAACACCACACTACTGGACACTTGAAACCATGCTCTGGAGATTCT
CATACaccaagctgtgagaaagaatGCAGACAAGGTTTGATCTATTTTCA
TCATGTGGAAAGGTTATTTATCTAAATTTGGTGTAcaataaacatgaaat
ttctaAAACCTAATAACaaatatgaaaagaaaaagttattgAAGTTAATA
TCAATAATCATAATGATTTATATTATTTAATAATCCAAATTATGTTCTAG
GCTACAATGTCAGCTACACTGAAGACAGACATTACGTTAAAACCAAATAC
ACTGTTTCAAGCGACCAAACCAAAATCATGACAGACATTATGACCAATGG
ACCAGTTGAAGGAGCTTTCACTGTCTATGCTGACTTCCCCAACTACAAAT
CAGGTTTGAATTTCATGGAAGATTTGAAATATGTAGAGCTGGCTCACTTA
TACTGGATATACTCTTAAAGCGGTAAAAGATGTAAATTACCcatatttta
aaagttctccTGTTTGATTTGGACAGTATTTCAAGTAGAGTTGTCtgatg
aaaaattaataaataaataatgtaTCTTTAACTTTGTGTGATCAGTGTTA
GTGATGCCaacaaaataacatttttcttttttgttataGGTGTTTATCAA
CACACCACTGGATCACAACTTGGTGGTCATGCCATCAAAATCCTTGGATG
GGGTACTGAGAGCGGAACACCTTACTGGTAAGGAAAATCTATATCGAAAT
TGTGACCttaataataaatttttttttgctgcaAATAGTTTCAGACAGTT
TCAATAAAACTTACATTAGAAAAGAACCCAACATTTATCTCCTAAAATCC
ATGTAAGTATCCGGATTTCAATTTTGCAAGCAGGTATTTGCAACTAACTC
ATTTTTTCCTGCCTTTCATCAGTATTACAAGACTTAGATAGCCGAAAGTA
ATATTTTAATCTATCATTTATGTAGGTTGGTTGCCAACTCATGGAATCCA
GACTGGGGAAACAAAGGTTCGTTTTCTGCtcagaaagaatttttttttct
atctgaGGAAACTGGGTTCGAGATTACAGGTTAATGTCTGACAttcttaa
agattttaaaaatcttgatgttatttccttgtaaattcattcCCAGGCCC
TTCGGAAGCCAACTGCACATTCaagggttgataggtgtattaCTTTGATA
GCGTATGAAAAGTGAGAAGGTTGGAAAtagtttatatattatattggcTT
CTTTTTTTAAAGGGTTTTTCAAGATTAAACGTGGAGGAAATGAATGTGGC
ATCGAATCCTCAATCACTGCTGGAATCCCTGcataaatttaaaatgaaaa
tgatttgttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017237-exon-sc0000261-1491911889:256424..256623 | TCONS_00017237-exon-sc0000261-1491911889:256424..256623 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1510915933:256424..256623 | TCONS_00017237-exon-sc0000261-1510915933:256424..256623 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1575043694:256424..256623 | TCONS_00017237-exon-sc0000261-1575043694:256424..256623 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1491911889:266674..266894 | TCONS_00017237-exon-sc0000261-1491911889:266674..266894 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1510915933:266674..266894 | TCONS_00017237-exon-sc0000261-1510915933:266674..266894 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1575043694:266674..266894 | TCONS_00017237-exon-sc0000261-1575043694:266674..266894 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1491911889:267211..267329 | TCONS_00017237-exon-sc0000261-1491911889:267211..267329 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1510915933:267211..267329 | TCONS_00017237-exon-sc0000261-1510915933:267211..267329 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1575043694:267211..267329 | TCONS_00017237-exon-sc0000261-1575043694:267211..267329 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1491911889:267608..267920 | TCONS_00017237-exon-sc0000261-1491911889:267608..267920 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1510915933:267608..267920 | TCONS_00017237-exon-sc0000261-1510915933:267608..267920 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1575043694:267608..267920 | TCONS_00017237-exon-sc0000261-1575043694:267608..267920 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1491911889:269938..270090 | TCONS_00017237-exon-sc0000261-1491911889:269938..270090 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1510915933:269938..270090 | TCONS_00017237-exon-sc0000261-1510915933:269938..270090 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1575043694:269938..270090 | TCONS_00017237-exon-sc0000261-1575043694:269938..270090 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1491911889:270327..270414 | TCONS_00017237-exon-sc0000261-1491911889:270327..270414 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1510915933:270327..270414 | TCONS_00017237-exon-sc0000261-1510915933:270327..270414 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1575043694:270327..270414 | TCONS_00017237-exon-sc0000261-1575043694:270327..270414 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1491911889:270663..270703 | TCONS_00017237-exon-sc0000261-1491911889:270663..270703 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1510915933:270663..270703 | TCONS_00017237-exon-sc0000261-1510915933:270663..270703 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1575043694:270663..270703 | TCONS_00017237-exon-sc0000261-1575043694:270663..270703 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1491911889:272686..272785 | TCONS_00017237-exon-sc0000261-1491911889:272686..272785 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1510915933:272686..272785 | TCONS_00017237-exon-sc0000261-1510915933:272686..272785 | Clytia hemisphaerica | exon |
| TCONS_00017237-exon-sc0000261-1575043694:272686..272785 | TCONS_00017237-exon-sc0000261-1575043694:272686..272785 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000261 | supercontig | sc0000261:256424..272785 + |
Blast
BLAST of TCONS_00017237 vs. Swiss-Prot (Human)
Match: CATB (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3) HSP 1 Score: 379.022 bits (972), Expect = 6.588e-129 Identity = 190/331 (57.40%), Postives = 239/331 (72.21%), Query Frame = 1
Query: 214 ALCCLLSVAFAKPSQNGLYNPLFQDIIDEVNSKQTTWKAGHNFDANVDHAYLKHLCGTFLDDPIRESLPEKQDF-ETVELPDEFDSRTKWGEICPSTKEVRDQGNCGSCWAFGAVEAFTDRICIASNGEKKPHISAEDLLSCCGFWCXXXXXXXXXXXAWNFFKRTGCVTGGQYSTKEGCRPYSIPACEHHTTGHLKPCSGDSHTPSCEKECRQGYNVSYTEDRHYVKTKYTVSSDQTKIMTDIMTNGPVEGAFTVYADFPNYKSGVYQHTTGSQLGGHAIKILGWGTESGTPYWLVANSWNPDWGNKGFFKIKRGGNECGIESSITAGIP 1203
+LCCLL +A A+ + ++PL ++++ VN + TTW+AGHNF NVD +YLK LCGTFL P P++ F E ++LP FD+R +W + CP+ KE+RDQG+CGSCWAFGAVEA +DRICI +N +SAEDLL+CCG CG GCNGG+ AWNF+ R G V+GG Y + GCRPYSIP CEHH G PC+G+ TP C K C GY+ +Y +D+HY Y+VS+ + IM +I NGPVEGAF+VY+DF YKSGVYQH TG +GGHAI+ILGWG E+GTPYWLVANSWN DWG+ GFFKI RG + CGIES + AGIP
Sbjct: 7 SLCCLLVLANARSRPS--FHPLSDELVNYVNKRNTTWQAGHNF-YNVDMSYLKRLCGTFLGGP---KPPQRVMFTEDLKLPASFDAREQWPQ-CPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIP 330
The following BLAST results are available for this feature:
|
