TCONS_00017228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017228
Unique NameTCONS_00017228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017228 ID=TCONS_00017228|Name=TCONS_00017228|organism=Clytia hemisphaerica|type=transcript|length=595bp
CAGGCGAAATTGAAAGTGTCAAGGATGGTGGTGGGTACGTACGCCTTCGT
GTTGAAAGTGACAGATTCAAGTGGTCAAGCGAACGAAGCTCAAGTCAAAG
TGGTCGTGCTCCCTGAAGAAAATACAGTCCCTGTCGCTAAAGCTGGCGAT
GATAAGGTAATTACTCATAAGATTTTAATGTGTTTTGGATTTGGAGCTAG
TTTAGAAACTTGTTTGTACTAGGAGGTTAGGGAATTTTAGGAGGTCTTCC
AGCAGTCTTTCTGGAGGAAATACAGTTCCTGTCGCCAAAGCTGGAGACGA
TAAAGTTATTATTTATACAATTTTGAAGTTTCTTCGATGGAGCTAGTCCA
GAAACTTGTATGTACTAGGAGGTTAGGGAATTTTAGGAGGTTCGGTGTAT
TTGGAGCTAGTATTGAAGCTCGTACATACTAGGCTAAAGGATTTTAGGAG
GTCTTCCAACAGTCTTTCTGGAAGAAAAATACTGTCCCTGTAGCTAAAAC
TGGAGATGGAGGTAACTTTTATCATTATCCATGATTCCACCCTGAAAAGA
ACACGATCTACGTTGCTAAGACAGGGAACAGATATGTTATAAGGA
Run BLAST on NCBI

transcript from alignment at sc0000261:159289..159883+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017228 ID=TCONS_00017228|Name=TCONS_00017228|organism=Clytia hemisphaerica|type=transcript|length=595bp|location=Sequence derived from alignment at sc0000261:159289..159883+ (Clytia hemisphaerica)
CAGGCGAAATTGAAAGTGTCAAGGATGGTGGTGGGTACGTACGCCTTCGT
GTTGAAAGTGACAGATTCAAGTGGTCAAGCGAACGAAGCTCAAGTCAAAG
TGGTCGTGCTCCCTGAAGAAAATACAGTCCCTGTCGCTAAAGCTGGCGAT
GATAAGGTAATTACTCATAAGATTTTAATGTGTTTTGGATTTGGAGCTAG
TTTAGAAACTTGTTTGTACTAGGAGGTTAGGGAATTTTAGGAGGTCTTCC
AGCAGTCTTTCTGGAGGAAATACAGTTCCTGTCGCCAAAGCTGGAGACGA
TAAAGTTATTATTTATACAATTTTGAAGTTTCTTCGATGGAGCTAGTCCA
GAAACTTGTATGTACTAGGAGGTTAGGGAATTTTAGGAGGTTCGGTGTAT
TTGGAGCTAGTATTGAAGCTCGTACATACTAGGCTAAAGGATTTTAGGAG
GTCTTCCAACAGTCTTTCTGGAAGAAAAATACTGTCCCTGTAGCTAAAAC
TGGAGATGGAGGTAACTTTTATCATTATCCATGATTCCACCCTGAAAAGA
ACACGATCTACGTTGCTAAGACAGGGAACAGATATGTTATAAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009640XLOC_009640Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017228-exon-sc0000261-1491911889:159289..159883TCONS_00017228-exon-sc0000261-1491911889:159289..159883Clytia hemisphaericaexon
TCONS_00017228-exon-sc0000261-1510915933:159289..159883TCONS_00017228-exon-sc0000261-1510915933:159289..159883Clytia hemisphaericaexon
TCONS_00017228-exon-sc0000261-1575043694:159289..159883TCONS_00017228-exon-sc0000261-1575043694:159289..159883Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000261supercontigsc0000261:159289..159883 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.208133	1.20699	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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