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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017169 ID=TCONS_00017169|Name=TCONS_00017169|organism=Clytia hemisphaerica|type=transcript|length=1237bp
AAAGATGGTGTAACGAGCTCGAAAGATGGTGTAACGAGTTCGAAAGATAA
TGTAACGAGCTCCAAAGAAGATTTAGAAGACCAAACCAAGGTTACTTTAa
ataaagaggaaaagaagaatTCTGGAAGCGACGAAGTTGCTGATGTCGAC
AAAGCTGATTTCGAGGAAGTGGAAAATGGTGAGAATAAGAAATACGGAGA
AgtgaagaatgaaaaagaacaaaaggacgagaaaaagaagaacgaaCAAA
ATGACGAAGAAGCGATTTTGAAACTCGGAGATGAAGAAAAAGACAAGGAA
ATGGAGAAGGAGGTTGCCCAACAGgaaattgacaaaataaaaacagccCA
AAAAGAAACTGCCCGAAAAGAAACGGAGCGAAAAGAAAGTGCCGAAAAGA
AAATTGATCAACTTGCAGTCCAACAAGCAGCTGCCCaaatggaaattgaa
aaaattaaaacggCCCAAAAAGAGGCTGCCCGAATTGAAATTGAGAAAAT
CAAAGCTGCCCAAAAAGAAGCAATACAAAATGTAGCTGCCCAAAGAGAAG
CTGCCcgaaaagaaatagaaaaaataaaatcggCCCAACATGAAGCAGCc
ctaaaagaaattgaaaacattaaaaaaacccGAAACAAAGCAGCCCAAAA
GGGAATTAACCAAAAAGAAACTGGTAGCACTGAGTTGACAGATGATATCA
AGAAAAATCAACAGGAACAAAAACTGAAGTGTAAAAACAAGACTATCAAC
GCTGTTTTTGATGACTGCACTGTAGAATTTGATCTTGATTTCGAAGATTT
GATGAAACTCAACAGAGAATACTCGATAACATATCCTCCAAATACTTTTC
AAATACCTTGTGATCATGAACCATGTGATTGGGATCTTCGACCAATCAAA
GCCTTGTATCATACTGAAGAACCAATCAGCTTCCAGCATCATCTTAATGA
ACCAATAAGAATGCTGCATTATCATCAACGCAAAGGGAAACACGTGTCAC
ATGATATTCACGTATTTGATGGCCGTAATCATAAACaacattttgTTTCG
CACGAGTCACCGTGCATGAACCGTGGTATCGCTTTACCGACGAAACACGA
TTATCAATGTATCTGTAGAAAGGGATTTTACGGAGCTGTTTGTTCTGGAA
TTGATCATTGTGCGAGAAGGCCCTGTTTACACGGTGGGCATTGTCACGTG
AATGACGTCACGCCTGGTTACACGTGTTCGTGCCCAC Run BLAST on NCBI transcript from alignment at sc0000260:80814..84147- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017169 ID=TCONS_00017169|Name=TCONS_00017169|organism=Clytia hemisphaerica|type=transcript|length=3334bp|location=Sequence derived from alignment at sc0000260:80814..84147- (Clytia hemisphaerica)
AAAGATGGTGTAACGAGCTCGAAAGATGGTGTAACGAGTTCGAAAGATAA
TGTAACGAGCTCCAAAGAAGATTTAGAAGACCAAACCAAGGTTACTTTAA
ATAAAGAGGAAAAGAAGAATTCTGGAAGCGACGAAGTTGCTGATGTCGAC
AAAGCTGATTTCGAGGAAGTGGAAAATGGTGAGAATAAGAAATACGGAGA
AGTGAAGAATGAAAAAGAACAAAAGGACGAGAAAAAGAAGAACGAACAAA
ATGACGAAGAAGCGATTTTGAAACTCGGAGATGAAGAAAAAGACAAGGAA
ATGGAGAAGGAGGTTGCCCAACAGGAAATTGACAAAATAAAAACAGCCCA
AAAAGAAACTGCCCGAAAAGAAACGGAGCGAAAAGAAAGTGCCGAAAAGA
AAATTGATCAACTTGCAGTCCAACAAGCAGCTGCCCAAATGGAAATTGAA
AAAATTAAAACGGCCCAAAAAGAGGCTGCCCGAATTGAAATTGAGAAAAT
CAAAGCTGCCCAAAAAGAAGCAATACAAAATGTAGCTGCCCAAAGAGAAG
CTGCCCGAAAAGAAATAGAAAAAATAAAATCGGCCCAACATGAAGCAGCC
CTAAAAGAAATTGAAAACATTAAAAAAACCCGAAACAAAGCAGCCCAAAA
GGGAATTAACCAAAAAGAAACTGGTAGCACTGAGTTGACAGATGATATCA
AGAAAAATCAACAGGAACAAAAACTGAAGTGTAAAAACAAGACTATCAAC
GGTATGTAATTTCAATAGTTTGCAGAATTTGAAAGTTTAAAAGTTTTTTT
GCTCAAACATAGACCAAATGGAACACATGAAATAACTATATAAGGTTAAA
CAATTTATTGCCACGCAATAGGTCCAAAATATACTTTTGCCAGATCGATT
CTCAATATTCCAGGAATATAGGGGGATAATAAAATAGCTGTGGCTCAATC
CGTATATTGTGGTCTGCAAACTTTCCCTTATTATTCGTCAATATATCGTG
TAGCCTAAGTATTAGGATGTATCAGCATCATAGAAAGGACGTTGTTTTAA
TGTTAGCTCTGACAGCTGGATACCACTTAGGTTCTTTGAAACATAATTAC
CATTTTTTTACAGCTGTTTTTGATGACTGCACTGTAGAATTTGATCTTGA
TTTCGAAGATTTGATGAAACTCAACAGAGAATACTCGATAACATATCCTC
CAAATACTTTTCAAATACCTTGTGATCATGAACCATGTGATTGGGATCTT
CGACCAATCAAAGCCTTGTATCATACTGAAGAACCAATCAGCTTCCAGCA
TCATCTTAATGAACCAATAAGAATGCTGCATTATCATCAACGCAAAGGGA
AACACGTGTCACATGATATTCACGTATTTGATGGCCGTAATCATAAACAA
CATTTTGGTAAAATCATATTATATATAATCATATAATATTATATCATATT
TCAGCCCCCTCTCATAATATCCAGTAGTCTCCTGCTCGGGCTCCTGCTAC
CACCATACACGCTTTTTTATAAGAATGGTGTAAATCCATTTCATCATGGA
TATTCTTAACTTTTTTTTGGGAAAATCATCCTAAAATTTTCTTACAGTAT
TCTTAGGTTAGGACCATAGATTTATAAAGCCCGAAGGGCTAGATGTCGTG
CTTTAAGCCATTGCAGGCAAAAACAAGTGAATATCGGAAAGAATATTGTT
GCTATTGTTTTTAAAAACCCGCGAAGCTTCTGATTGGTCAAGCGCTGAAA
TTCTATTGTAATGTCACGTGATTTAGGTAGGATTTCCTACCTAACCACGG
CACACTTTTCAGCAAAAGTACGCCATCTAGCCCTTCGGGCTTTATAAATA
TATGGTTAGGATCCTTATTTGGACTAGATTTAACATTTGGTACATACGTC
TCAAGTATAAAATGGCATTTTTGTGAAAGGAGTGAGCCTTACTTGGGGAT
AATTGACAATTTATAATTGAAAATGCTCTAAAAATGGCATTCTTAGCTTC
AGTAGCCAAATTCCATGATGGTGATATTCTTAGCATTATTCTTAATTTTT
TGGCCATTTTCTTCATGGACATTCTTATAAAGTGTATTCTTATGAAAAAA
AGTGTGTACTCATAATTTATGGTTGGATTGGTCATTACCACAAGAGGGGA
ATTTCCCATAGAATCGTACCACGGAATGAAGAAATTAGTCCACTAAAAGT
TCTTTTATTTATCATTGTATCTCCAGAATGAACCTGTCTTTTCAATGGAG
TTCTCGTCGTCACACTCATCTTTTTGAGGATGGTACACGTTTTTTCTATA
AGAACATCCAAAAATTTTGAAGTCTTCGGATGTTCTTAACTTTTTGATTT
AACATGTTCTTATTATTATTATCTTAGTTTTTTTGTCCATTTTCCTATGA
AACTCGATGTTCTAGAGTCTACAAAGCTTTAAAAAATTCTTAACTCGTTC
TTAATATTTTGGCCATCGAAACCTTATGTTCTTATATAGTTTGTTCTCAT
TAAAAAAACGTGTAATTTGAAAATGGGCTAAAAAAACAGGGGATTGTTAA
GGCAGGGTCTTTACTTTATTCGTTTTCTCATTTTCAGTTTCGCACGAGTC
ACCGTGCATGAACCGTGGTATCGCTTTACCGACGAAACACGATTATCAAT
GTATCTGTAGAAAGGGATTTTACGGAGCTGTTTGTTCTGGTTAGTATAAA
GTTTTTGGGTAATATGGTGGTCGCCCCGCCTTAACCTCGTTCCCTGATAC
ACAAATATGAAGTTAAGGTGGCTTTCCTGACCAGAGAGATTATTATTCTC
AACGTGCTGTTAATCCGATAGTTCAACTGTCCCAAGATGGACTGATTTAT
TTTTATTTTCCTGTTTTTAACAACCCAACCAGGAACCCTTTGGGATGAAA
AAGGAACCCCGTCCAGCAGGGAATTTGTTAAGTCATTTATAATCTGTGTA
ATAAATGGATGTTATATGATGATAGTCACGGGGTAATATTATTTTGTATA
TTAAACTATTAAAATTGGACCCTTGCAATATTTTGCAATGTCTGAATTAA
TCATCCAGCATGCTAGACCAAGGCATTCCTGGTTCCAACCCCGGTCCCAT
TTACAAAAATTGAGCGATTATTCACCGGAGAAAAACGGTTTTTCGATTTA
AATTTGGATAATAAGTACTTTTTTATTTCTAGGAATTGATCATTGTGCGA
GAAGGCCCTGTTTACATGGTGGACATTGTCACGTGACNTTCTAGGAATTG
ATCATTGTGCGAGAAGGCCCTGTTTACACGGTGGGCATTGTCACGTGAAT
GACGTCACGCCTGGTTACACGTGTTCGTGCCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017169-exon-sc0000260-1575043694:83397..84147 | TCONS_00017169-exon-sc0000260-1575043694:83397..84147 | Clytia hemisphaerica | exon |
| TCONS_00017169-exon-sc0000260-1575043694:82741..83034 | TCONS_00017169-exon-sc0000260-1575043694:82741..83034 | Clytia hemisphaerica | exon |
| TCONS_00017169-exon-sc0000260-1575043694:81459..81560 | TCONS_00017169-exon-sc0000260-1575043694:81459..81560 | Clytia hemisphaerica | exon |
| TCONS_00017169-exon-sc0000260-1575043694:80814..80903 | TCONS_00017169-exon-sc0000260-1575043694:80814..80903 | Clytia hemisphaerica | exon |
| TCONS_00017169-exon-sc0000260-1510915933:83397..84147 | TCONS_00017169-exon-sc0000260-1510915933:83397..84147 | Clytia hemisphaerica | exon |
| TCONS_00017169-exon-sc0000260-1510915933:82741..83034 | TCONS_00017169-exon-sc0000260-1510915933:82741..83034 | Clytia hemisphaerica | exon |
| TCONS_00017169-exon-sc0000260-1510915933:81459..81560 | TCONS_00017169-exon-sc0000260-1510915933:81459..81560 | Clytia hemisphaerica | exon |
| TCONS_00017169-exon-sc0000260-1510915933:80814..80903 | TCONS_00017169-exon-sc0000260-1510915933:80814..80903 | Clytia hemisphaerica | exon |
| TCONS_00017169-exon-sc0000260-1491911889:83397..84147 | TCONS_00017169-exon-sc0000260-1491911889:83397..84147 | Clytia hemisphaerica | exon |
| TCONS_00017169-exon-sc0000260-1491911889:82741..83034 | TCONS_00017169-exon-sc0000260-1491911889:82741..83034 | Clytia hemisphaerica | exon |
| TCONS_00017169-exon-sc0000260-1491911889:81459..81560 | TCONS_00017169-exon-sc0000260-1491911889:81459..81560 | Clytia hemisphaerica | exon |
| TCONS_00017169-exon-sc0000260-1491911889:80814..80903 | TCONS_00017169-exon-sc0000260-1491911889:80814..80903 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000260 | supercontig | sc0000260:80814..84147 - |
Blast
The following BLAST results are available for this feature:
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