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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017168 ID=TCONS_00017168|Name=TCONS_00017168|organism=Clytia hemisphaerica|type=transcript|length=2268bpRun BLAST on NCBI protein sequence of TCONS_00017168-protein >TCONS_00017168-protein ID=TCONS_00017168-protein|Name=TCONS_00017168-protein|organism=Clytia hemisphaerica|type=polypeptide|length=756bp PNPCVENVCKNGATCTHDGHGNTDCICKSGYKGDRCQFINKCYPSPCMNGRun BLAST on NCBI transcript from alignment at sc0000260:50361..79905- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017168 ID=TCONS_00017168|Name=TCONS_00017168|organism=Clytia hemisphaerica|type=transcript|length=29545bp|location=Sequence derived from alignment at sc0000260:50361..79905- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000260:50361..79905- >TCONS_00017168 ID=TCONS_00017168|Name=TCONS_00017168|organism=Clytia hemisphaerica|type=CDS|length=36288bp|location=Sequence derived from alignment at sc0000260:50361..79905- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017168 vs. Swiss-Prot (Human)
Match: NOTC1 (Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1 PE=1 SV=4) HSP 1 Score: 161.384 bits (407), Expect = 1.402e-40 Identity = 145/485 (29.90%), Postives = 208/485 (42.89%), Query Frame = 1
Query: 4 NPCVENVCKNGATCTHDGHGNTDCICKSGYKGDRCQF-INKCYPSPCMNGGKCREFVNKSNDSKEGRNFYCECPPFFKGPLCQVKT-FCPNLPCHNGGTCRETDDDYTCICPKGFAGKTCEERP--CYPNPCLNGGLCTEEEGSYSCLCNQWSTGKNCS-IITPCKSRPCGDHGHCVDGESDFKWTFHPMEFHCVCIPPYRGKYC--TVHECDR--CSPNGRCNKYH---QCVCNEGFYG-----DGYTCTEAPETSSLCDSQPCLNNGKCILTEDKLNYTCKCIPPNDGAFCEQERKTCVPDPCVNGKCVPKDGGGFECKCIEGYFGATCN-VTDVCLPNPCLNHGACSKDTNGKASCKCLGSWSGPTCKECRCPKSRKPNIPDALCHPATGDCYCPT----------FNGKNFDFISGLG-------ICQEIKGGIDTCSPNVCENQSECTPDSKNPQ--YAPYNDAHCKCKDLHKGAYCQFI 1347
N CV + C++GA+C + HG C C++GY G C+ I+ C P+PC NGG C + +N + +C+C P F+G C+ C + PC NG C + D YTC CP GF+G CE C + C NGG C + S++CLC TG C + C S+PC G C DG ++ C C Y G C VH CD C G+C + H +C C G+ G +C A + + ++ C + G C+ + + C+C G++CE C P PC NG GG+ CKC+ GY G C+ D CL +PC N G C P +C CP+ + C DC P NG D + G + + +G ++ C N C D++ Q ND HC+C+ H G C+ +
Sbjct: 871 NECVLSPCRHGASC-QNTHGGYRCHCQAGYSGRNCETDIDDCRPNPCHNGGSCTDGINTA---------FCDCLPGFRGTFCEEDINECASDPCRNGANCTDCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPGFTGSYCQHDVNECDSQPCLHGGTCQDGCGSYR---------CTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGN--THHCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTC---------------LDLPNTYKCSCPRGTQ----GVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFVGERCEGDVNECLSNPC--------DARGTQNCVQRVNDFHCECRAGHTGRRCESV 1307 HSP 2 Score: 161.384 bits (407), Expect = 1.519e-40 Identity = 170/550 (30.91%), Postives = 225/550 (40.91%), Query Frame = 1
Query: 4 NPCVENVCKNGATCTHDGHGNTDCICKSGYKGDRCQF-INKCYPSPCMNGGKCREFVNKSNDSKEGRNFYCECPPFFKGPLCQVKT-FCPNLPCHNGGTCRETDDDYTCICPKGFAGKTCEE--------------------------RP-------------CYPNPCLNGGLCTEEEGSYSCLCNQWSTGKNCSI-ITPCKSRPCGDHGHCVDGESDFKWTFHPMEFHCVCIPPYRGKYCTVHECDRCSPN-----GRCN---KYHQCVCNEGFYGDGYTCTEAPETSSLCDSQPCLNNGKCILTEDKLN-YTCKCIPPNDGAFCEQERKTCVPDPCVNGKCVPKDGGGFECKCIEGYFGATCNV-TDVCLPNPCLNHGACSKDTNGKASCKCLGSWSGPTCKECRCPKSRKPNIPDALCHPA----TGDCYCPT-FNGKNFDFISGLGI---------CQEIKGG-----------------IDTCSPNVCENQSECTPDSKNPQYAPYNDAHCKCKDLHKGAYCQF-IKHCHPDFNPCLNKAKCIE 1401
N CV N C+N ATC D G CIC GY+G C+ ++C SPC++ G+C + +N+ F CECP F G LCQ C + PC NG C + + YTC+C +G+ G CE RP C PC +GG C + + +Y C C + +TG NC I + C S PC D G C+D ++ C C P Y G C ++ D C+ N G C C C EG++ D +E E C+S PC+ +G C D LN Y C C P G C+ C +PCVNG G+ C C EG+ G C + C NPCLN G C D G C CL ++G TC+ P + P C + + C CPT + G+ + + CQ GG ID C PN C N CT N A C C +G +C+ I C D PC N A C +
Sbjct: 454 NECVSNPCQNDATCL-DQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINE---------FQCECPTGFTGHLCQYDVDECASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEVDIDECDPDPCHYGSCKDGVATFTCLCRPGYTGHHCETNINECSSQPCRHGGTCQDRDNAYLCFCLKGTTGPNCEINLDDCASSPC-DSGTCLDKIDGYE---------CACEPGYTGSMCNIN-IDECAGNPCHNGGTCEDGINGFTCRCPEGYH-DPTCLSEVNE----CNSNPCV-HGAC---RDSLNGYKCDCDPGWSGTNCDINNNECESNPCVNGGTCKDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVAGY-KCNCLLPYTGATCEVVLAPCAPSPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDINECVLSPCRHGASCQNTHGGYRCHCQAGYSGRNCETDIDDCRPNPCHNGGSCTDG--------INTAFCDCLPGFRGTFCEEDINECASD--PCRNGANCTD 962 HSP 3 Score: 134.806 bits (338), Expect = 4.104e-32 Identity = 150/491 (30.55%), Postives = 205/491 (41.75%), Query Frame = 1
Query: 4 NPCVENVCKNGATCTHDGHGNTDCICKSGYKGDRCQFINKCYPSPCMNGGKCREFVNKSNDSKEGRNFYCECPPFFKGPLC-QVKTFCPNLP--CHNGGTCRETDDDYTCICPKGFAGKTCEE--RPCYPNPCLNGGLCTEE-EGSYSCLCNQWSTGKNCSI-ITPCKSRPCGDHGHCVDGESDFKWTFHPMEFHCVCIPPYRGKYCT--VHEC----DRCSPNGRCNKYH---QCVCNEGFYGDGYTCTEAPETSSLCDSQPCLNNGKCILTEDKL-NYTCKCIPPNDGAFCEQERKTCVPDPCVNGK---CVPKDGGGFECKCIEGYFGATC--NVTDVCL-PNPCLNHGACSKDTNGKASCKCLGSWSGPTCKECRCPKSRKPNIPDALCHPATGDCYCPTFNGKNFDFISGLGICQEIKGGIDTCSPNVCENQSECTPDSKNPQYAPYNDAHCKCKDLHKGAYCQF-IKHCHPDFNPCLNKAKCIEG 1404
N C+ N C+NG TC C C G+ G CQ + C +PC NGG+C F ++ C CPP F GP C Q C P C +GGTC Y C+C G CE PC P+PC NGG C + ++ C C TG+NC I C C + G CVDG + ++C C P + G+YCT V EC + C G C+ H CVC G+ G+ + E C S C + C D++ ++ C+C G C C+ +PC G P +G C C GY G C +V + L NPC + G C +T G C+CL ++GP C+ P DA C G+ C G G+ E+ D C+ + C + C N+ C+C G CQ+ + C PC N AKC++G
Sbjct: 104 NACLTNPCRNGGTCDLLTLTEYKCRCPPGWSGKSCQQADPCASNPCANGGQCLPFE---------ASYICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVN---------TYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHGGYNCVCVNGWTGE-----DCSENIDDCASAACFHGATC---HDRVASFYCECPHGRTGLLCHL-NDACISNPCNEGSNCDTNPVNGKAI-CTCPSGYTGPACSQDVDECSLGANPCEHAGKC-INTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYE-------GVHCEVN--TDECASSPCLHNGRC--------LDKINEFQCECPTGFTGHLCQYDVDECAS--TPCKNGAKCLDG 546 HSP 4 Score: 133.265 bits (334), Expect = 1.407e-31 Identity = 120/373 (32.17%), Postives = 148/373 (39.68%), Query Frame = 1
Query: 1 PNPCVENVCKNGATC-THDGHGNTD--CICKSGYKGDRCQ--FINKCYPSPCMNGGKCREFVNKSNDSKEGRNFYCECPPFFKGPLCQVKTFCPNLPCHNGGTCRETDDDYTCICPKGFAGKTCEERP----CYPNPCLNGGLCTEEEGSYSCLCNQWSTGKNCSI-ITPCKSRPCGDHGHCVDGESDFKWTFHPMEFHCVCIPPYRGKYCTVHECDRCSPNGRCNKYHQCVCNEGFYG-------DGYTCTEAPETSSLCDSQPCLNNGKCILTEDKLNYTCKCIPPNDGAFCEQERKTCVPDPCVNGKCVPKDGGGFECKCIEGYFGATCNVTDVCLPNPCLNHGACSKD-TNGKASCKCLGSWSGPTCKE 1065
PNPC+ CKN TC D G D C C G+ G C N C +PC NGG C D + C CPP + G CQ C + PC NGG C + Y C CP F G TC + P C +GG C E GSY C+C TG NC PC PC + G C + C C+P + G+ C D C P C CV Y G CTE + L + C N G C T Y C C+ G C + C C +G F C+C G G C++ D C+ NPC C + NGKA C C ++GP C +
Sbjct: 60 PNPCLSTPCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTC--------DLLTLTEYKCRCPPGWSGKSCQQADPCASNPCANGGQCLPFEASYICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGD--------VTHECACLPGFTGQNCE-ENIDDC-PGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNA-CQNGGTCHNTHG--GYNCVCVNGWTGEDCSENIDDCASAACFHGATCHDRVASFYCECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQ 411 HSP 5 Score: 109.768 bits (273), Expect = 2.579e-24 Identity = 114/400 (28.50%), Postives = 155/400 (38.75%), Query Frame = 1
Query: 4 NPCVENVCKNGATCTHDGHGNTDCICKSGYKGDRCQ-FINKCYPSPCMNGGKCREFVNKSNDSKEGRNFYCECPPFFKGPLCQVKTFCPNLP-----------CHNGGTCRETDDDYTCICPKGFAGKTCEER--PCYPNPCLNGGLCTEEEGSYSCLCNQWSTGKNCSI-ITPCKSRPCGDHGHCVDGESDFKWTFHPMEFHCVCIPPYRGKYCTVHECD------------RCSPNGRCNKY---HQCVCNEGFYGD-----------------------------------GYTCTEAPETSSLCDSQPCLNNGKCILTEDKLN-YTCKCIPPNDGAFCEQERKTCVPDPCVNGKCVPKDGGGFECKCIEGYFGATCN--VTDVCL-PNPCLNHGAC 996
N C C +G TC DG G+ C C GY G CQ ++ C SPC NGGKC + + + CECP + G C V + + C +GG C + + + C C G+ G CE+ C P+PC NG CT+ G YSC C G NCS I C S PC + G C+D P + C C +G +C ++ D +C NG C + C C GF G+ G+T + C +PC N G C + + + CKC +GA CE + +TC C+NG C C+ + G C + CL NPC N G C
Sbjct: 1023 NECDSQPCLHGGTC-QDGCGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCWQTHTQ---------YRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNTHHCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLD---------LPNTYKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVGGYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGGTCAVASNTARGFICKCPAGFEGATCENDARTCGSLRCLNGGTCISGPRSPTCLCLGPFTGPECQFPASSPCLGGNPCYNQGTC 1403 HSP 6 Score: 101.293 bits (251), Expect = 9.692e-22 Identity = 165/643 (25.66%), Postives = 226/643 (35.15%), Query Frame = 1
Query: 232 KGPLCQVKTFCPNLPCHNGGTC-----------------------------------------RETDDDYTCICPKGFAGKTC---EERPCYPNPCLNGGLC-TEEEGSYSCLCNQWSTGKNCSIITPCKSRPCGDHGHCVDGESDFKWTFHPMEFHCVCIPPYRGKYCT--VHECDR----CSPNGRCNK---YHQCVCNEGFYGDGYTCTEAPETSSLCDSQPCLNNGKCILTEDKLNYTCKCIPPNDGAFCEQERKTCVPDPCVNGKCVPKDGGGFECKCIEGYFGATCNV-TDVC--LPNPCLNHGACSKDTNGKASCKCLGSWSGPTCKECRCPKSRKPNIPDALCHPATGDCYCPTFNGKNFDFISGLGICQEIKGGIDTCSPNVCENQSECTPDSKNPQYAPYNDAHCKCKDLHKGAYC-QFIKHCHPDFNPCLNKAKCIEGRVLLVQSSVGSVDSKKILKKRSSIHQHNVLNKNLRVVLPPQEQTPITLTPGNYSTSLSPEYYAPM--------ISSLLMRKKKIILREQEFKREIAD--------------ASESLHTVEKALQKDEGFTCICPPGTHPPHCSADLIKPTPSPSHCLPNPCHNGAVCKSLEDGFDCMCSPQFTGPLC--NIDRC 1914
+GP C P C NGG C R DY C C GF+G C + C NPC NGG C Y C C +GK+C PC S PC + G C+ E+ + C C P + G C V+EC + C G C+ ++CVC G P C PC N G C T D + + C C+P G CE+ C + C NG + C+C + G C D C +PN C N G C +T+G +C C+ W+G C E + A CH YC +G+ G+ + D C N C S C + N + A C C + G C Q + C NPC + KCI +++GS + + + + +V N V P Q G + P Y SS + + + + EF+ E AS K L +TC+C G HC D+ C P+PCH G+ CK F C+C P +TG C NI+ C
Sbjct: 20 RGPRCSQ----PGETCLNGGKCEAANGTEACVCGGAFVGPRCQDPNPCLSTPCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTCDLLTLTEYKCRCPPGWSGKSCQQADPCASNPCANGGQCLPFEASYI---------CHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGSYRCVCRATHTGPNCERPYVP-----CSPSPCQNGGTCRPTGD-VTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTC-HNTHGGYNCVCVNGWTGEDCSENIDDCASAACFHGATCHDRVASFYCECPHGRT-------GLLCHLN---DACISNPCNEGSNCDTNPVNGK------AICTCPSGYTGPACSQDVDECSLGANPCEHAGKCI--------NTLGSFECQCLQGYTGPRCEIDV---NECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQYDVDECASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEVDI-------DECDPDPCHYGS-CKDGVATFTCLCRPGYTGHHCETNINEC 607 The following BLAST results are available for this feature:
BLAST of TCONS_00017168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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