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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017146 ID=TCONS_00017146|Name=TCONS_00017146|organism=Clytia hemisphaerica|type=transcript|length=3434bp
CAAATAAGTAAGATGGTTATTGCGCGTGTTGATTGTGGTGATCGAATCCA
CTCAAAAATGGCGACTTCAGATAAATTGGAGGCCAGCCTCGGACAAGGTA
TAAAAGGTCTCAAGGAAAGCATGAAGAATATGAATCAGAAAGCAAAAGAT
ACGAACGAGCGGGCCGAGCGGATGGAAAAAGAGCTCGCGGTCGCTAAACA
AGCTCATATCAAAGCGTACGGCCGTTTACAGGCATTAAAAGAACGTAAAA
TTGACGTTGAAGAACGTATAGAANAAAGCGTACGGCCGTTTACAGGCATT
AAAAGAACGTAAAATTGACGTTGAAGAACGCATAGAACGAAACAATGATA
AAATTAAAGACATAACGAAACGAGTGAATGAAAAAGAGAAATTTGTGGAA
GAGAGTAAGAAATTtgcgaaaagtttgaaagtcaTTGTCCCTGAAGAACA
TGAAGTTATGGAAATGGAAGAACGATTAAGagttcaaaaagaaatttatt
caCAACATTATGAGAAATACAATCGGATGAAGAACAGGAAAGTGGAATTG
GAACAGGAATTCGAGCATGCGGAACTGAAAGCACATGAAGCTTGCAGACG
AATGGAAGCATTGAATACCGAATTGGAATATTCTCAAACTGAAGAAGCTA
GAAGAGAAGAAGCTTGCAGAGCAGCAATCGACGGAGCTTTCAACTACGAA
AAGAAATGTTTGGATCTGCAAAACGGGTTAGATCATATTATGCAACGTAA
AGAAGAAGCTACCAAGAGAATCAACAAATTAGAAAAAGAAACACGAAAAG
CTGAAAATGCAACCGAAACATTGACTTTCGAACGAAAAAGGATGGAAGCA
ACTATTCGTGAGATCTTACTCAGCTTTAGAAATAAACAATCATAGGGTTA
GATGTATAGAAAAACTATTAATTAACAATCAAATGCAAGAAAGCGGAAAT
GTGAGTTCAGGTTGACATTACGGGCCCATGGGTGCCCATCAGTCACTCTC
ACTGATACGCTTGGCACCCATGGACCCCGTAATATCAACCTGATCCGAAA
TGTGTAACCTGGTCCGGGACACTATACTCTGAATTATCATGACTTGCACC
AACTTAAAGCACCTCCCCATTGAGCCGATGTCAAGTTTTACAAACTTGAA
GGTTGTTACTACacattattttcttataaaaaaagaagctAAAATCCTTA
AATAGGAAATTCTCCTCGCATCATCTAGTGCAAACCGAATTCCCTTTCTA
AGGATCTCATTaggtttaacttttttttaccACCTCCTTAGGGcttttct
taaaggttttatttttacataagtgttcctgtttcaggacagtgtctgcc
tattgttatatcttgctccacatccatctCAATTCAATATCTAGCTTGTA
AATCTAAATttatgagtaagcaaacgatatcactcttatttaaaaacaaa
accctcAAGTTAAGCCCTTTaacaatatttaaaattttttttattatgtg
GTATTATTCCCTTGGTCCCTTTTTGGATCAAATTTATAGAGAATCACTTG
CACCTTTTATACCTTTggttttagaaaaagaaaaaagttttctttaaaaa
ttattaCAATTAATTctcagttgtttattttttttcaaatactaAATATC
TAAATGTCATTTCAATTTATAAAATTAAGTTTACTATTGTTGTATATTAT
TGTCATTATTATTCTTCgttaaaattaataaaacttcattttgtaaatta
aaaatatgGATCATCAGTATATCTCATTTGCTTTAACACAGGTCAATGCT
TAGTCAGTATTCTTACCAAATTTGGCCcgttcaatacaccttttcgaccg
tagtctcGCGGTTAGGCGCGTGCCAcgttattatttaattatcctcCTAA
ACTCGATtctaatcctttttttacacctttttctattgtctataggtgcg
aaaaaagactgggacggttttagggtggtgaaatggtcaaaaaattgcCC
GCGCTGCAATTGGTGGCTTCGTTCGAAAAGGTGTATCGTCAATTTATCAT
CATTCGAAAATGTTCTATCTTTGCTTCAACTGTCCAAATAATACGCTAAT
GATCGTTTGTTTTGCTGAAATAAGTCAAAAATTTATTAtgattttggttt
ttcttttttccaaaatatacaGGTTCATTTATACCACTCAGTCCTGGATA
ATTAAGTCTGCCTCTTCAATCTACAAGTTTGCCAACAAATCTTACCGGAA
ACCAATCTCCAAATATAGTAAATATCTTCTCTATTTCTGAATTAAAATCC
AAATCGCTCCTAAAACCAACAAACCCACTGTCATAAAAGAAGGAATGGCC
ATGGATGCACGTCCACACATGTGTGCGTGGTCAAACTTGGATGTTTCATT
ATAACACTTAGCGATTGGTTGTTTACGATAATGCGTCGCATTTTGCTGGT
TGCGAACACACCATTCAGCTTTTGGTGTTCTTAGCTCCTCTCTTTTAGGA
TAATAAGGATCTTGAAAACATTTATTATCACAAGCTTCTGAGTCATCAGA
ACCAATTGACATCTCTAATAAATAAACATTGGTGCCTGGTATAACTTGGA
TAAGAAACTTCGGTGCATTTGTCCCTGTACATTGACCAGGACATTTGAAA
GCATCCCACGTTTTGTCTTCCATGCGAGCACCGTATGTTTCAATCAAGGT
ACGGTTCAGACGAAAATATTCGACCTCTTTAACACAGCTTACAGTAATTT
TAGTATGCTCGCCAGCTGAGACTTCATGTTGATTCTGCATTAAAGAAACC
AGTAATACTACAGCTTGTATAGTCACCCAATAAACTGATTTTGCTAAACA
AGACAAACAGCCAACCAGCAATTTAGCAGGTGTTAATAATAAGTTTGCAC
TTGAATTATCATCGTCAGGGACCTCGCATTCAGCCTGTGTATCTTTGATG
ACTTTTCGCGTCATGTTTAGATACGGTATTATGGAACTGACTCGTTCGCC
AATGAATCGGCCAGTGTATTTGTTACCTAAAATGAGAAACACAATTGATA
ATTTCATTACGGACTATATCTTATTCTTTATATGTGTAAGTCGAGATGAC
GTCATATATCCTCTAACGGAAGCACCAAAAAAGAAGCCATCGAAAAATTT
ATGTTCAGTTCCAAATCAAATCCCGTTGTTGTCTATCACGATGATATCAG
CATAAACATGGTGGGGTTTGCGTTTGACCCACGGGAAAATTTTGGATCCA
GGAACCCACGAGTAATTtcaacccacgaacccacgtgATCTTTTTTGGAC
CAACGAACCCACGGACCCACGAGACATTTTAACCCACGaacacccacgag
ggcacgaacccacggacccacgaacccacgacacggacgtaacccacgta
atttagcaCACTCGCAATGTTGTGGGTCTTTCCA Run BLAST on NCBI transcript from alignment at sc0000260:23042..30148+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017146 ID=TCONS_00017146|Name=TCONS_00017146|organism=Clytia hemisphaerica|type=transcript|length=7107bp|location=Sequence derived from alignment at sc0000260:23042..30148+ (Clytia hemisphaerica)
CAAATAAGTAAGATGGTTATTGCGCGTGTTGATTGTGGTATGCAAGacta
ataaaatttcatttccagaAATCCAAAAATTTCGAATTCCATCGGAAGTT
TGACTTCGACTAGTCCTATCTTCTGAATTTAAGGCAATCAACTTAGAATT
TCGTGCAAATTTTGAAATGCAATaatgatttttgaaagttcATTAGTTCG
AAGCTCATCAGTAGAGTCTCCTTGTAGTTTGGAGACTTCACCAGAGCTCC
CTGATGAACCAGTAGCATAGCGTGGTGACAGGGGCGGCCGGGGGCTCCGG
AAGACAAAGGCGCCTCTGTTTACTAATGATGAAACTTTATTCTCGCTTTA
TGTTCGTTTCAGGTGATCGAATCCACTCAAAAATGGCGACTTCAGATAAA
TTGGAGGCCAGCCTCGGACAAGGTATAAAAGGTCTCAAGGAAAGCATGAA
GAATATGAATCAGAAAGCAAAAGATACGAACGAGCGGGCCGAGCGGATGG
AAAAAGAGCTCGCGGTCGCTAAACAAGCTCATATCAAAGCGTACGGCCGT
TTACAGGCATTAAAAGAACGTAAAATTGACGTTGAAGAACGTATAGAANA
AAGCGTACGGCCGTTTACAGGCATTAAAAGAACGTAAAATTGACGTTGAA
GAACGCATAGAACGAAACAATGATAAAATTAAAGACATAACGAAACGAGT
GAATGAAAAAGAGAAATTTGTGGAAGAGAGTAAGAAATTtgcgaaaagtt
tgaaagtcaTTGTCCCTGAAGAACATGAAGTTATGGAAATGGAAGAACGA
TTAAGagttcaaaaagaaatttattcaCAACATTATGAGGTAAGTTGTAT
GATATTACTCTTCGATGTGACACTTCTTTCAACCTTTTCGCTTTCCATCT
TTGATTATATGCAAAAATAGCGATAAGTTTGCTGTGGGTGATTGAATAAC
GagaactgaaaaaaataactttggcGAGAActtgttttcgaaaataattt
gtaatttacaaagaaagttatttttttggcgagaatttattttggcgatg
cTGCAAATAacttagcctatactagacgccacccgcgttttttctacgca
attaacgtctattccactttgcgtaCGGGATAAAAAAtctcggtttttag
tgaggcACTCGCTACAAATAACTTAATTTTGACGAAAACTAGCTTtggca
aattttatcaaaatacacgttttttcgtAAGAATGGTGAATTTTCATTTC
CTCATGGGTTCTCTTgacttttttggggaaaaaaacATCCTAAGGCTAGG
ATCAAAATTCAACCTTAATTTAACATGAGAGGAGAAAACACAGCTGAAGc
ataaaatggtatttttgtgaaagtattgGGCATTAATTGGCAATTTGTAt
ttaaaaattcactaaaaacGACATTCTGAGGTTCAGTTTTCAAACTCCAt
gaatatttttattgattctattcttataaaaatatagcctgggaatccaa
gctcataatcttagaaaaaaaaaaaacaatcaccTCACAAATTTCtcaga
ttatagagcttggtgcaggtagattagtctgacacagaatgttataaaca
gtctatgtgtgaacccttgttgacaaactttctgaactttggaaacccag
gtaaacacacataatcaacttaccataaaaacttttttcacaagctctaa
aagactttcaaaactactaaaaacaacatcaaaacatcagccacatgtat
ctAGACTTCaagtcaacagccattttgtttctaatgaatttatgttttca
ttttcatttgtttcccttttttctgcagagtcagctttttccataaatta
tgcgcacgCATCGAAATTATCGAAATGCGCgcaaaagtactgctaagtaa
tacgccgaaagctggccaatcaggccgaacctgcattgcagggaaaaatc
tccctgcaagCGAgctacctgcgccaagcgttaaacaagcagcaaaaata
taataaactagactgtgaacaaagtttaacgcttggattcccaggctaat
aaAAATAGCGTATGAAATAATAACTTACACTGTTATTTTCTCCAATTCGA
ATGTGAATATAAATCTGTCAAGATTCTTCTTGATTCCCTGTCTACTCCCT
TCTCGTCAAAAGATTTATCGATACTGAGTGGCAGAAAAAAACAAGATGAT
AATAATAATCtataatttgaagttttttactAAACCTCCAGGGactaaaa
atgcaaaaacataactttttctATTGTAACAGAAAAACTTCAACTCTCAA
GGAGGGCcgaaataacaaaaatattctaaggCTACGTACAAAATAGCCAT
TGACTTAATTCGAGattcctggatgggaaatgaaaccacttatttcccat
gcAGAACGCCCGCGTTTGGTTTTTAACACAAaggccggattgaaactaaa
atctatcgctagatttaaaaaattgcagtcttcaaaaacaaagaagccgc
tagatacaatccgtcgtcataaTTACGGGACCTTCtaggcgcgttttgga
tgggaaataagtggcttcactttttcttgcctgggaaaattagagattct
actctagcctttcgggctttaaactcaatgaaaaTAGCCATTAAGGtaaa
gccgaaggctagaatcGACTGATGGTGTTTGCTTTTATAGAATACTCAAT
GTATGTCTaatctttttttccattttccattgAGAAATACAATCGGATGA
AGAACAGGAAAGTGGAATTGGAACAGGAATTCGAGCATGCGGAACTGAAA
GCACATGAAGCTTGCAGACGAATGGAAGCATTGAATACCGAATTGGAATA
TTCTCAAACTGAAGAAGCTAGAAGAGAAGAAGGTTAgaacatagatttat
aaaacctgaagggctagatgtcgtgctcaGGAAAGTGAaactgaaaagtg
tgccgaggttaggtaggaaatcctacctaggtcacgtgacattacaatag
aatttcagcgcttgaccattAAGAAACTTCGCGGGTTTTTTAAAACAAAC
GCAGCAATATCtattgcgatattcactttttttttgcttggaagagctta
aagcacgacatctagcccttcgggcattacagaaatctgtgggtTAGAAT
GAGTTAAGATTCGACCCCAGTCTCTTAAGTTGATCTTTGTCACTTGATAC
CGCAGGTGCggttaacaatccaaaagttcgcTCAACTATCAAATGCGCTA
AAACGAAAAATTCGGATAGTGCTGcggtcccagctggcacacaacgttgt
ttcaacgtttatctaatgttcataacgttagatgaacgttgaaacaacgt
tttttgaacgttgaaacagcgtTTTATGCCAGCTGCGGTAAAACTAATCT
CGTAAACAGAGCCACTtacaccactttttgattttattgatggGCATTAT
ACTACcagttttataaaaaagtgaacATTGGGACTGGATTCGAGTTTGTG
GTACAGCCAAtttgaaaaaagacaaaagaattcTCACAGAATGTTTTTTA
ACAGGCCAGCTTGATTCGTCTCTCGAATTAttcgaaaatcttgattttaa
attttggatTGTTAACCCTTACTATTACTACGGCACGATCAAAATAGGAA
GTGTCTTTTCATGAGGCAACATTGAAAGAAATACTATCCTTTGCTCCTCT
CATTTCTCATTTTCTGTCCAGGGCCTTACTTTTCACGATGATAAACAAGT
AGTAATTAAGTTTGCGACTGCAGTCGAGGGCGACttgaaggctccctttt
ctatagctgtctacccgaagatctatccacttacccttgatccgtctctt
gaGTTGctaagcatcaagcagagaagcatcaagtaccattttggaaatct
tcgTTATGACTCGGTCGGGGATCATACCCACAAACTTGCACACCGTAGCC
GGAtactctaccttcatgctacagCCGCTAAACATAGAATAGCTTAAAAT
CTGTATTCTAACTTTCCTGAATCGCCTCTTTATCTGCAGGGTGCTAACTT
TCAATATACcatatcggagtttttgatttttctaaaaaagcaatgcattg
tgggattgtttcgagtgtattacaatagaactCCCTCGatgaattcctaa
gagatttctattttaatacactcgaaacaatcccacaatgcatccctttt
tagaaaaatctaaaattctgATACGGTCTACACGAgggaaattttttgtt
tgcgaCCATGAATAAAACATAAACGTTGCTTGGTAAAAACAAACAGACGA
ACAGTTTATAAGtatgaaatttcatttttttacagCTTGCAGAGCAGCAA
TCGACGGAGCTTTCAACTACGAAAAGAAATGTTTGGATCTGCAAAACGGG
TTAGATCATATTATGCAACGTAAAGAAGAAGCTACCAAGAGAATCAACAA
ATTAGAAAAAGAAACACGAAAAGCTGAAAATGCAACCGAAACATTGACTT
TCGAACGAAAAAGGATGGAAGCAACTATTCGTGAGATCTTACTCAGCTTT
AGAAATAAACAATCATAGGGTTAGATGTATAGAAAAACTATTAATTAACA
ATCAAATGCAAGAAAGCGGAAATGTGAGTTCAGGTTGACATTACGGGCCC
ATGGGTGCCCATCAGTCACTCTCACTGATACGCTTGGCACCCATGGACCC
CGTAATATCAACCTGATCCGAAATGTGTAACCTGGTCCGGGACACTATAC
TCTGAATTATCATGACTTGCACCAACTTAAAGCACCTCCCCATTGAGCCG
ATGTCAAGTTTTACAAACTTGAAGGTTGTTACTACacattattttcttat
aaaaaaagaagctAAAATCCTTAAATAGGAAATTCTCCTCGCATCATCTA
GTGCAAACCGAATTCCCTTTCTAAGGATCTCATTaggtttaacttttttt
taccACCTCCTTAGGGcttttcttaaaggttttatttttacataagtgtt
cctgtttcaggacagtgtctgcctattgttatatcttgctccacatccat
ctCAATTCAATATCTAGCTTGTAAATCTAAATttatgagtaagcaaacga
tatcactcttatttaaaaacaaaaccctcAAGTTAAGCCCTTTaacaata
tttaaaattttttttattatgtgGTATTATTCCCTTGGTCCCTTTTTGGA
TCAAATTTATAGAGAATCACTTGCACCTTTTATACCTTTggttttagaaa
aagaaaaaagttttctttaaaaattattaCAATTAATTctcagttgttta
ttttttttcaaatactaAATATCTAAATGTCATTTCAATTTATAAAATTA
AGTTTACTATTGTTGTATATTATTGTCATTATTATTCTTCgttaaaatta
ataaaacttcattttgtaaattaaaaatatgGATCATCAGTATATCTCAT
TTGCTTTAACACAGGTCAATGCTTAGTCAGTATTCTTACCAAATTTGGCC
cgttcaatacaccttttcgaccgtagtctcGCGGTTAGGCGCGTGCCAcg
ttattatttaattatcctcCTAAACTCGATtctaatcctttttttacacc
tttttctattgtctataggtgcgaaaaaagactgggacggttttagggtg
gtgaaatggtcaaaaaattgcCCGCGCTGCAATTGGTGGCTTCGTTCGAA
AAGGTGTATCGTCAATTTATCATCATTCGAAAATGTTCTATCTTTGCTTC
AACTGTCCAAATAATACGCTAATGATCGTTTGTTTTGCTGAAATAAGTCA
AAAATTTATTAtgattttggtttttcttttttccaaaatatacaGGTTCA
TTTATACCACTCAGTCCTGGATAATTAAGTCTGCCTCTTCAATCTACAAG
TTTGCCAACAAATCTTACCGGAAACCAATCTCCAAATATAGTAAATATCT
TCTCTATTTCTGAATTAAAATCCAAATCGCTCCTAAAACCAACAAACCCA
CTGTCATAAAAGAAGGAATGGCCATGGATGCACGTCCACACATGTGTGCG
TGGTCAAACTTGGATGTTTCATTATAACACTTAGCGATTGGTTGTTTACG
ATAATGCGTCGCATTTTGCTGGTTGCGAACACACCATTCAGCTTTTGGTG
TTCTTAGCTCCTCTCTTTTAGGATAATAAGGATCTTGAAAACATTTATTA
TCACAAGCTTCTGAGTCATCAGAACCAATTGACATCTCTAATAAATAAAC
ATTGGTGCCTGGTATAACTTGGATAAGAAACTTCGGTGCATTTGTCCCTG
TACATTGACCAGGACATTTGAAAGCATCCCACGTTTTGTCTTCCATGCGA
GCACCGTATGTTTCAATCAAGGTACGGTTCAGACGAAAATATTCGACCTC
TTTAACACAGCTTACAGTAATTTTAGTATGCTCGCCAGCTGAGACTTCAT
GTTGATTCTGCATTAAAGAAACCAGTAATACTACAGCTTGTATAGTCACC
CAATAAACTGATTTTGCTAAACAAGACAAACAGCCAACCAGCAATTTAGC
AGGTGTTAATAATAAGTTTGCACTTGAATTATCATCGTCAGGGACCTCGC
ATTCAGCCTGTGTATCTTTGATGACTTTTCGCGTCATGTTTAGATACGGT
ATTATGGAACTGACTCGTTCGCCAATGAATCGGCCAGTGTATTTGTTACC
TAAAATGAGAAACACAATTGATAATTTCATTACGGACTATATCTTATTCT
TTATATGTGTAAGTCGAGATGACGTCATATATCCTCTAACGGAAGCACCA
AAAAAGAAGCCATCGAAAAATTTATGTTCAGTTCCAAATCAAATCCCGTT
GTTGTCTATCACGATGATATCAGCATAAACATGGTGGGGTTTGCGTTTGA
CCCACGGGAAAATTTTGGATCCAGGAACCCACGAGTAATTtcaacccacg
aacccacgtgATCTTTTTTGGACCAACGAACCCACGGACCCACGAGACAT
TTTAACCCACGaacacccacgagggcacgaacccacggacccacgaaccc
acgacacggacgtaacccacgtaatttagcaCACTCGCAATGTTGTGGGT
CTTTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017146-exon-sc0000260-1491911889:23042..23078 | TCONS_00017146-exon-sc0000260-1491911889:23042..23078 | Clytia hemisphaerica | exon |
| TCONS_00017146-exon-sc0000260-1510915933:23042..23078 | TCONS_00017146-exon-sc0000260-1510915933:23042..23078 | Clytia hemisphaerica | exon |
| TCONS_00017146-exon-sc0000260-1575043694:23042..23078 | TCONS_00017146-exon-sc0000260-1575043694:23042..23078 | Clytia hemisphaerica | exon |
| TCONS_00017146-exon-sc0000260-1491911889:23404..23880 | TCONS_00017146-exon-sc0000260-1491911889:23404..23880 | Clytia hemisphaerica | exon |
| TCONS_00017146-exon-sc0000260-1510915933:23404..23880 | TCONS_00017146-exon-sc0000260-1510915933:23404..23880 | Clytia hemisphaerica | exon |
| TCONS_00017146-exon-sc0000260-1575043694:23404..23880 | TCONS_00017146-exon-sc0000260-1575043694:23404..23880 | Clytia hemisphaerica | exon |
| TCONS_00017146-exon-sc0000260-1491911889:25776..25923 | TCONS_00017146-exon-sc0000260-1491911889:25776..25923 | Clytia hemisphaerica | exon |
| TCONS_00017146-exon-sc0000260-1510915933:25776..25923 | TCONS_00017146-exon-sc0000260-1510915933:25776..25923 | Clytia hemisphaerica | exon |
| TCONS_00017146-exon-sc0000260-1575043694:25776..25923 | TCONS_00017146-exon-sc0000260-1575043694:25776..25923 | Clytia hemisphaerica | exon |
| TCONS_00017146-exon-sc0000260-1491911889:27377..30148 | TCONS_00017146-exon-sc0000260-1491911889:27377..30148 | Clytia hemisphaerica | exon |
| TCONS_00017146-exon-sc0000260-1510915933:27377..30148 | TCONS_00017146-exon-sc0000260-1510915933:27377..30148 | Clytia hemisphaerica | exon |
| TCONS_00017146-exon-sc0000260-1575043694:27377..30148 | TCONS_00017146-exon-sc0000260-1575043694:27377..30148 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000260 | supercontig | sc0000260:23042..30148 + |
Blast
The following BLAST results are available for this feature:
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