TCONS_00017141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017141
Unique NameTCONS_00017141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length457

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017141 ID=TCONS_00017141|Name=TCONS_00017141|organism=Clytia hemisphaerica|type=transcript|length=457bp
TTAAAATCAAAGCCAGTCATCCTTCCAGAGTTGACATAATTTTCCTCGGC
AGAAACTCCAGCTTTTCTAGTAGTATTTACTCTTTTCTCACTATCAATAA
TAAATACCTTCTTTGAGGTAAAATCTAAAAACCATTTTCGATTCAATGTG
AAGAACTTGTCTCGATCATACAATGAAAGGTCAGAAATTGGGATGGTATG
GCGATGAGATATTATCTTATCATCGTTAAAATCATTACAGTCAACCAAGT
ACAAGAAATGTCTTCCATCTTTACTCTGCATGAGGATGCTGAAAAACTGG
CCATTCTTTTCTGTGTTATGGATTGCGCTTCCAATATATTCCCATTTGTA
ATCAATAGGTATGTAAATACTTTCCCCTATATCGGCATCTGAAGGATCAA
TTTTTATCGAAGTCCCAAAACGTTGCCTCAAAGTTTGACTTTGAACTTTC
AGAACGT
Run BLAST on NCBI

protein sequence of TCONS_00017141-protein

>TCONS_00017141-protein ID=TCONS_00017141-protein|Name=TCONS_00017141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
VLKVQSQTLRQRFGTSIKIDPSDADIGESIYIPIDYKWEYIGSAIHNTEK
NGQFFSILMQSKDGRHFLYLVDCNDFNDDKIISHRHTIPISDLSLYDRDK
FFTLNRKWFLDFTSKKVFIIDSEKRVNTTRKAGVSAEENYVNSGRMTGFD
F
Run BLAST on NCBI

transcript from alignment at sc0000259:308211..308667

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017141 ID=TCONS_00017141|Name=TCONS_00017141|organism=Clytia hemisphaerica|type=transcript|length=457bp|location=Sequence derived from alignment at sc0000259:308211..308667 (Clytia hemisphaerica)
ACGTTCTGAAAGTTCAAAGTCAAACTTTGAGGCAACGTTTTGGGACTTCG
ATAAAAATTGATCCTTCAGATGCCGATATAGGGGAAAGTATTTACATACC
TATTGATTACAAATGGGAATATATTGGAAGCGCAATCCATAACACAGAAA
AGAATGGCCAGTTTTTCAGCATCCTCATGCAGAGTAAAGATGGAAGACAT
TTCTTGTACTTGGTTGACTGTAATGATTTTAACGATGATAAGATAATATC
TCATCGCCATACCATCCCAATTTCTGACCTTTCATTGTATGATCGAGACA
AGTTCTTCACATTGAATCGAAAATGGTTTTTAGATTTTACCTCAAAGAAG
GTATTTATTATTGATAGTGAGAAAAGAGTAAATACTACTAGAAAAGCTGG
AGTTTCTGCCGAGGAAAATTATGTCAACTCTGGAAGGATGACTGGCTTTG
ATTTTAA

Coding sequence (CDS) from alignment at sc0000259:308211..308667

>TCONS_00017141 ID=TCONS_00017141|Name=TCONS_00017141|organism=Clytia hemisphaerica|type=CDS|length=453bp|location=Sequence derived from alignment at sc0000259:308211..308667 (Clytia hemisphaerica)
GTTCTGAAAGTTCAAAGTCAAACTTTGAGGCAACGTTTTGGGACTTCGAT
AAAAATTGATCCTTCAGATGCCGATATAGGGGAAAGTATTTACATACCTA
TTGATTACAAATGGGAATATATTGGAAGCGCAATCCATAACACAGAAAAG
AATGGCCAGTTTTTCAGCATCCTCATGCAGAGTAAAGATGGAAGACATTT
CTTGTACTTGGTTGACTGTAATGATTTTAACGATGATAAGATAATATCTC
ATCGCCATACCATCCCAATTTCTGACCTTTCATTGTATGATCGAGACAAG
TTCTTCACATTGAATCGAAAATGGTTTTTAGATTTTACCTCAAAGAAGGT
ATTTATTATTGATAGTGAGAAAAGAGTAAATACTACTAGAAAAGCTGGAG
TTTCTGCCGAGGAAAATTATGTCAACTCTGGAAGGATGACTGGCTTTGAT
TTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009592XLOC_009592Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017141-proteinTCONS_00017141-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017141-exon-sc0000259-1491911889:308211..308667TCONS_00017141-exon-sc0000259-1491911889:308211..308667Clytia hemisphaericaexon
TCONS_00017141-exon-sc0000259-1510915933:308211..308667TCONS_00017141-exon-sc0000259-1510915933:308211..308667Clytia hemisphaericaexon
TCONS_00017141-exon-sc0000259-1575043694:308211..308667TCONS_00017141-exon-sc0000259-1575043694:308211..308667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000259supercontigsc0000259:308211..308667 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.429166	0.139502	0	0	0.385836	0	0.18392	0	0	0	0	0.0952741	2.09312	1.08686	1.05601	1.39478	0.429565	0.110072	2.58521	4.45568	1.10651	0.607183	0.656098	1.3421	1.38233	1.37077	0.196157	0.209344	0.15878	0.323544
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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