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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017123 ID=TCONS_00017123|Name=TCONS_00017123|organism=Clytia hemisphaerica|type=transcript|length=1897bpRun BLAST on NCBI protein sequence of TCONS_00017123-protein >TCONS_00017123-protein ID=TCONS_00017123-protein|Name=TCONS_00017123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp MSFRAIYIVKPTTRFPENILFHRSFPVIERKCKKSLGDDYVPIPPNCPLLRun BLAST on NCBI transcript from alignment at sc0000259:304140..329439- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017123 ID=TCONS_00017123|Name=TCONS_00017123|organism=Clytia hemisphaerica|type=transcript|length=25300bp|location=Sequence derived from alignment at sc0000259:304140..329439- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000259:304140..329439- >TCONS_00017123 ID=TCONS_00017123|Name=TCONS_00017123|organism=Clytia hemisphaerica|type=CDS|length=20706bp|location=Sequence derived from alignment at sc0000259:304140..329439- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00017123 vs. Swiss-Prot (Human)
Match: AP5M1 (AP-5 complex subunit mu-1 OS=Homo sapiens GN=AP5M1 PE=1 SV=2) HSP 1 Score: 232.261 bits (591), Expect = 8.344e-68 Identity = 151/494 (30.57%), Postives = 251/494 (50.81%), Query Frame = 1
Query: 121 MSFRAIYIV--KPTTRFPENILFHRSFPVIERKCKKSLGDDYVPIPPNCPLL---IIEALQLNRTDKFVADLDSCSRKQITPVYKLLDG--KLFPVVAFLKNGLIFCCIPHTEEKVNKTLLESEKNEDRGDFLYSPGVALAFALIQNMLKFIGFGN-NYETLQNKLQALHKYASIGFPLGIPTELDIHTALGIASYSENIPLPKIKGPSWRATTYKGKQSLNIEINEFIKAIQFDSKEYPDVCEIYGTVRCKADVEE-SPEISLDIIAPLESTIHNQMLFHPSVQLADD--VTPLINKGANTGRQYGSRKLRFCPPNNEIDLCQYKVKLHEDDIPVKAFYQMKGDQNRLTIMIQIQIAEQMKSSFEAFEVQIPFFNRGPIVEFKSLTS-SNLVLLPDKCTLLWNVGHKFSSKGGDKIMEANVTFSNEFVPPIRTDPLLVGANSYITMYWRVSDFTYSGLKFDNKSVELFPNSKIKVNSVTMLKTVEYKIWNSRG 1566
M+ RA++++ +P T + F R +P +E++ + G YVP+P + P L + E L+ FV DSCSR T +Y LL G +L+PVVAFLKN +I+ C+P E+ ++ R + GV+ F + + F+ G N L KL L P G + ++ +L +++ ++ P+ K P+W+ TYKGK ++I I E +K++Q+D + D ++ GTV CK D+E P +++ + P + +L HP V D +T + G K F PP +LC Y ++ P+ FYQMK ++ +L I I +++ E +K++FE E IPF+NRGPI + TS L + +K L+W +G KF K + + VTF + DP+ G +Y+ +++R+ D+T +G D SV++F + K K+++ L + +Y IWNS+
Sbjct: 1 MAQRAVWLISHEPGTPLCGTVRFSRRYPTVEKRARVFNGASYVPVPEDGPFLKALLFELRLLDDDKDFVESRDSCSRINKTSIYGLLIGGEELWPVVAFLKNDMIYACVPLVEQTLSP----------RPPLISVSGVSQGFEFLFGIQDFLYSGQKNDSELNTKLSQLPDLLLQACPFGTLLDANLQNSLDNTNFA-SVTQPQ-KQPAWKTGTYKGKPQVSISITEKVKSMQYDKQGIADTWQVVGTVTCKCDLEGIMPNVTISLSLPTNGSPLQDILVHPCVTSLDSAILTSSSIDAMDDSAFSGPYKFPFTPPLESFNLCFYTSQVPVP--PILGFYQMKEEEVQLRITINLKLHESVKNNFEFCEAHIPFYNRGPITHLEYKTSFGQLEVFREKSLLIWIIGQKF-PKSMEISLSGTVTFGAKSHEKQPFDPICTGETAYLKLHFRILDYTLTGCYADQHSVQVFASGKPKISAHRKLISSDYYIWNSKA 479 The following BLAST results are available for this feature:
BLAST of TCONS_00017123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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