TCONS_00017122 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00017122
Unique Name	TCONS_00017122
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	823

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000259:297212..300621-

transcript sequence

>TCONS_00017122 ID=TCONS_00017122|Name=TCONS_00017122|organism=Clytia hemisphaerica|type=transcript|length=823bp
TGGATGGTAAATCTAACACGGCACTTCATTGTGATGATGATACGAAGAAA
AATACAACCAAAGTAACAACTGCTGCACCTAACAATGCCAAAATTGGATG
CATCAATAACAAAAAGAgTTCGTCAGTACAACAGAAAACGGCAAGTCAAG
AGCTGAAAGATCCACAAGGTGATTTATTCTGTATGGTACGTCAATATTAT
GTTCCTAACCAATCAAATGAGATGCCGTTATGTTAAAAATCATCCATTCG
GAAgacattttttgtcattatcaaTGGTTGCTAAGCAACGTTGGCGGTAG
ATTGAAAAGATGATGAGAATGTGAAGCTACTACTGACTTTGGACCTTTTC
AAGAGAGATTGAATCTCTACATTAAcggattttaaattttccatgCAGCC
CGATGTACCCCCTGGACATCCTTATTTATAAAGTTGATTTTCCTGCTGAT
AACGTTTGCTTGCTCCCTGGATATCCAATTTTGAGATCATTTACCCTATT
GGCCCACATTGGTCCCTGACAGAGCGGTGTTGTACAGTATAAGGCTTTTG
GTTTGAGAGACCCATTTGCTCTGTCCCCCTCTGTCTCAACAGTGAACCCA
ACATCGTTAGTGTATTTGATAAAAATGCAGTATAAAAATAAACTGTACAT
GCTACATGTTTGCTGAGAGTTAATTGTTTGTGTTGTTCAAGCTTGTGTTG
AAAACTTGAAGATGGTCATACATTTTATCTCCGGTTTTAAAAGAGGATCT
AATGTGATTTTAGGCtttctaattttgaaatgaaatatacATTTAGAAAT
TTAATAGAATGTTGTTGTATTCA

Run BLAST on NCBI

transcript from alignment at sc0000259:297212..300621-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00017122 ID=TCONS_00017122|Name=TCONS_00017122|organism=Clytia hemisphaerica|type=transcript|length=3410bp|location=Sequence derived from alignment at sc0000259:297212..300621- (Clytia hemisphaerica)
TGGATGGTAAATCTAACACGGCACTTCATTGTGATGATGATACGAAGAAA
AATACAACCAAAGGTTTGAACTAATACAGTTCCTTACTCCATTGTACCAC
TTCAGGTGTTAGCTCGATTTGAATATGACCGTATGTGCGGGCCAAAATCA
GGTCTTTATATAATCAAACCCTTACAGTGCAGAGCTCATTTTGACCCTTA
CAATGCACTTTAAGAGGCCTGAAAATCGCACCCTCAAGAACCGCACTTAC
AGATAGTTGGTTACGTTGAGTTACCGCACTCCCCGGCAATTGTACCGATT
TTTTTATAAACAACCTCTCCGATAACGATCTTTACATCCAGTTACTTATT
TACATTGGCAAAGCTCATAAGTTAAATATAAATTTACAAAATATAATTTT
GATAAACAAAGAATATGAAATTAAATACCAGTGGATACCCCTTAAAACCT
ATAGAAAATAAGATCATTGGTACTCTCGGGTACCTAATAGCCGGGGGATT
GGAATAAGCGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGGGTTGGAAAAATTCTCAAAACTTAATA
AGCGGGGGGGGGGTTGGAATAAAAATGTCCTGGGTGGAAATTTTTTGAAA
AGGAGGCTAATTCAGCAGAATTGGGACAAAATAGGGAACCTTCAAAAACA
TTTTCCCAAAAATTAATAAGCGGGGGGGTGGAATGAGAATCTCCTGAGTG
GAAAATTTTCGAAAAATTAATTAGCGGGGGGCGGCTATTAGGTAACCTAA
ATATTTTCAAAACTGTACGTTAAAATCAAATTGCAACTTAAATCTATTAC
ACCTTAAAACCTACAAACACCCCTTGCTCACAACTTACTGAAACTGTGAA
ATTGCAATTCAGGTGCTATACCGTGATTCAATTGATCAAATACTTGCTAG
AAATCCCCAATCCCCAAAAGAATATTTGTATTTTTCAGGATTTCATACCT
ATAATGCAATTATGCCTGTTTTTTGTTAAAAACGGCTTTGAAGGGTCAAA
CTTCTATTGACTTATGGTACTAATATTTTTTCTTAATCTCCATCAAATTT
GTGACCTTTTGGTATGCAATATCACCATGATTTTATTGGCTTTAGAATAG
AAACTTCAGGATCTTACGATTTCTTTGGGGTCTAACTATGAAGAAGAAAA
TTATATTTTCATACCTACCGTAAGTATAGGTACCTAAAAAGTACGATTTT
GTTACATTAAATTCTTTTGTGTAATCTCTAGGTCGGAAAAACTCAAATTT
TTGAAGGAATTTTAAGACACTTCGTTATAATTGAAATTTTCGAAACAAGC
TACTTTATGAAAGTACATTTATAAAAGGATGTAAAAAAGTGAATTATGCC
GTTAAATTAAGTTTGGTGGCTAAGAGGGCCCAAAGTCCGTCTTTGTAGGT
TTTAAGGGGTATGTGGTTTTAAAGGGGTATCCACTGGTATTTAAAAAATT
TCTACTTTACTTTACTTTAATTTCTACTCTAATTTTCTACTGCAATTTCG
GTAATTTTTCTTTTGACTAATTTTTAGTAACAACTGCTGCACCTAACAAT
GCCAAAATTGGATGCATCAATAACAAAAAGAGGTAAAATTTTCACAAATT
AATTGTGTTAATCCTTATCAAGTCTACAGGTCCTCCGGACTAAGAAAATA
AGACTGAGAATTGAATTGAATAATTTGGTTGGGTTTACTTTTTACAAAAC
TCAATAATTTCTGGTTTTAAGAAAAACAATTTTCAAAGGCGACTTAATTA
AAAGCTTTGAAATAAATACAGGACTTTTTTGAGAATTTGCCTTCTTTCCC
ATTAGTTCGTCAGTACAACAGAAAACGGCAAGTCAAGAGCTGAAAGATCC
ACAAGGTGATTTATTCTGTATGGTACGTCAATATTATGTTCCTAACCAAT
CAAATGAGATGCCGTTATGTTAAAAATCATCCATTCGGAAGACATTTTTT
GTCATTATCAATGGTTGCTAAGCAACGTTGGCGGTAGATTGAAAAGATGA
TGAGAATGTGAAGCTACTACTGACTTTGGACCTTTTCAAGAGAGATTGAA
TCTCTACATTAACGGATTTTAAATTTTCCATGCAGCCCGATGTACCCCCT
GGACATCCTTATTTATAAAGTTGATTTTCCTGCTGATAACGTTTGCTTGC
TCCCTGGATATCCAATTTTGAGATCATTTACCCTATTGGCCCACATTGGT
CCCTGACAGAGCGGTGTTGTACAGTATAAGGCTTTTGGTTTGAGAGACCC
ATTTGCTCTGTCCCCCTCTGTCTCAACAGTGAACCCAACATCGTTAGTGT
ATTTGATAAAAATGCAGTATAAAAATAAACTGTACATGCTACATGTTTGC
TGAGAGTTAATTGTTTGTGTTGTTCAAGCTTGTGTTGAAAACTTGAAGAT
GGTCATACATTTTATCTCCGGTTTTAAAAGAGGATCTAATGTGATTTTAG
GCTTTCTAATTTTGAAATGAAATATACATTTAGAAATTTAATAGAATGTT
GTTGTATTCA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_009575	XLOC_009575	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00017122-exon-sc0000259-1575043694:300559..300621	TCONS_00017122-exon-sc0000259-1575043694:300559..300621	Clytia hemisphaerica	exon
TCONS_00017122-exon-sc0000259-1575043694:298140..298194	TCONS_00017122-exon-sc0000259-1575043694:298140..298194	Clytia hemisphaerica	exon
TCONS_00017122-exon-sc0000259-1575043694:297212..297916	TCONS_00017122-exon-sc0000259-1575043694:297212..297916	Clytia hemisphaerica	exon
TCONS_00017122-exon-sc0000259-1510915933:300559..300621	TCONS_00017122-exon-sc0000259-1510915933:300559..300621	Clytia hemisphaerica	exon
TCONS_00017122-exon-sc0000259-1510915933:298140..298194	TCONS_00017122-exon-sc0000259-1510915933:298140..298194	Clytia hemisphaerica	exon
TCONS_00017122-exon-sc0000259-1510915933:297212..297916	TCONS_00017122-exon-sc0000259-1510915933:297212..297916	Clytia hemisphaerica	exon
TCONS_00017122-exon-sc0000259-1491911889:300559..300621	TCONS_00017122-exon-sc0000259-1491911889:300559..300621	Clytia hemisphaerica	exon
TCONS_00017122-exon-sc0000259-1491911889:298140..298194	TCONS_00017122-exon-sc0000259-1491911889:298140..298194	Clytia hemisphaerica	exon
TCONS_00017122-exon-sc0000259-1491911889:297212..297916	TCONS_00017122-exon-sc0000259-1491911889:297212..297916	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000259	supercontig	sc0000259:297212..300621 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.462251	0.28173	0.261692	0.320031	0	0.184724	1.85718	2.0864	2.04503	1.5078	1.52205	0.962051	1.72928	1.9156	0.918684	0.739417	1.34466	1.06702	2.39549	3.08518	1.78772	1.22623	0.72876	0.903476	0.806484	1.1627	0.0792297	0	0.256531	0.0653412

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00017122 vs. Swiss-Prot (Human)

BLAST of TCONS_00017122 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00017122 (transcript) - C. hemisphaerica