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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017107 ID=TCONS_00017107|Name=TCONS_00017107|organism=Clytia hemisphaerica|type=transcript|length=668bp
GAATCAAGACGCAGAAATAACATgagaaacttgaaaattttttacatttt
atcaTTCGTCATACTAAATGTAACATTTTCGTCGGAACTGGGAATGAAAT
CGTTTGGTATCATATCACCATGCCAACAAAATAGATCATCATCTGGGAAT
TTTACTAACAACTCCTCAAATCAATGGCCAATAACGAATCTACCAAACCT
TTCCGAAGCTGTAATCACCACTACAAGCAACTCCATCCTTCGTTACGTCA
TTGAAAAATCCATCAGAACAACACCGAGTTCTTCATCAACCACAAATTTC
ATCTTATACGTCAACATTGACGGCATATTGAATGAAAAGCACGACAATAA
CAAAGTCAGAGAGGAAATCTTCAAACGACGTCACAATCAAGAATTCCAAG
AAATCTATTTTCACATATCTTTAAAAACTCTTCTATATGATATTGAATGG
CttgaaaaatttgttgaaagctTGGTTCAATTATTAAAATCTTTACTCGT
AATTGTTCTCAATGTTGGTTATTTTCTAACTGAACTCATTGTGGGTCGAT
TCTCGTCGAATCTCCTGAATCATCCTAGAGTTATTTGGATAAGTCGACAT
GCCGAGTTGAAGACAGGAGAATTCCCGTTTCGCTATGGATTGGTGCTGGA
ATACGAACATCAATGTTT Run BLAST on NCBI protein sequence of TCONS_00017107-protein >TCONS_00017107-protein ID=TCONS_00017107-protein|Name=TCONS_00017107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
ESRRRNNMRNLKIFYILSFVILNVTFSSELGMKSFGIISPCQQNRSSSGN
FTNNSSNQWPITNLPNLSEAVITTTSNSILRYVIEKSIRTTPSSSSTTNF
ILYVNIDGILNEKHDNNKVREEIFKRRHNQEFQEIYFHISLKTLLYDIEW
LEKFVESLVQLLKSLLVIVLNVGYFLTELIVGRFSSNLLNHPRVIWISRH
AELKTGEFPFRYGLVLEYEHQC Run BLAST on NCBI transcript from alignment at sc0000259:289023..291000+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017107 ID=TCONS_00017107|Name=TCONS_00017107|organism=Clytia hemisphaerica|type=transcript|length=1978bp|location=Sequence derived from alignment at sc0000259:289023..291000+ (Clytia hemisphaerica)
GAATCAAGACGCAGAAATAACATgagaaacttgaaaattttttacatttt
atcaTTCGTCATACTAAATGTAACATTTTCGTCGGAACTGGGAATGAAAT
CGTTTGGTATCATATCACCATGCCAACAAAATAGATCATCATCTGGGAAT
TTTACTAACGTAAGAATGATCACATTCAGCTAAAAAGATCAGATGTCTac
cgggtaacttgcatcagtggaggctaacatgcatagccctcaaatgaatg
acctgactggtcattaaaatacaaagttaaatcaaaacaaaaatggtagA
GTAGAGATGCGAGTGGAGCTGCgcagttgtattttaatgaccagacaggt
cattcatttgagggctatgcatgtttgcctccactgatgcaagttacccg
atctcacggtatcaATCCTTGGCAGTCAAACCTTGCATATGGGGACGGTG
TACGAGTGTGACGGTGTGACGGTGTGACGGTATCAGCCTTTCTTTCCGTC
GGTCTTTCGGTGTTAAAAGGAAAAGTTATAGTATTTCGGTGTTGACAGTG
ACCCAAGGGAgatttgtcggtatttcggtcaCGCTACTCCCGTATGCCCC
CTCATGCATAGGACCTGATATTTTTTGAACAGCTTGGATTGAATAAACTT
TGACTTACAATACACCTATCACTTTACGTCACAAACTAGGTTTGAGTTTG
CCAAGGTTGACTGACTTTCTTTGACCTAAGTAGAATGGAATTTAGTCCCC
ATTTCATGCAAATTTTTGGGCAAGGGTTGAAAGGTGTATTCAACTCGTCC
ATCTTATGATCTACTCATCTCTGAAATCTAATTACTCGACCGGATTCAAA
ATTGGACAAATGCATATCTAGTTTGTTTTCTATGTTGTGCCTTGTTGTTT
TCGTTTCCGAATTTTAGTTTTCAAAGACTATAGAcactatcaaaagaaat
tttacaaGATAATAGACTATCTGCAATcaaggtcgtaatatttgagaaaa
aagggaaatccaccgggaagttttgaaaccacgaTCGATAAGTgatctaa
agtaggttcgaaaggtagagttttaactcggagttttaacgctagactta
aggctaaggaccttaggatctgaggatccaaaagttcaaaaatagtccaa
taagtctcagaatatagcctggaagtctgcccaCCCCTCCCagattgaaa
tattcgattaaattaaagagatatcccaaaattgactttctcgcctgaac
tttaaatcttgaaaaaagtcaaaataaccAGAATTCTCATTATATTTCAA
CCAGGATTGTAGCTTTATGGGAAATTATATATGTATATTACTGATAAGCT
ATCTCgttttcgagaaaaactttcaTTTGATAGTTCGTTTTTATTTGCCT
TATTTGGGAGGGGTGTTTTCTGGTAAGACCCAATCTTATCCGTTGAACAT
TTTATCACTCTTGTTTTAGAACTCCTCAAATCAATGGCCAATAACGAATC
TACCAAACCTTTCCGAAGCTGTAATCACCACTACAAGCAACTCCATCCTT
CGTTACGTCATTGAAAAATCCATCAGAACAACACCGAGTTCTTCATCAAC
CACAAATTTCATCTTATACGTCAACATTGACGGCATATTGAATGAAAAGC
ACGACAATAACAAAGTCAGAGAGGAAATCTTCAAACGACGTCACAATCAA
GAATTCCAAGAAATCTATTTTCACATATCTTTAAAAACTCTTCTATATGA
TATTGAATGGCttgaaaaatttgttgaaagctTGGTTCAATTATTAAAAT
CTTTACTCGTAATTGTTCTCAATGTTGGTTATTTTCTAACTGAACTCATT
GTGGGTCGATTCTCGTCGAATCTCCTGAATCATCCTAGAGTTATTTGGAT
AAGTCGACATGCCGAGTTGAAGACAGGAGAATTCCCGTTTCGCTATGGAT
TGGTGCTGGAATACGAACATCAATGTTT Coding sequence (CDS) from alignment at sc0000259:289023..291000+ >TCONS_00017107 ID=TCONS_00017107|Name=TCONS_00017107|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at sc0000259:289023..291000+ (Clytia hemisphaerica)
GAATCAAGACGCAGAAATAACATgagaaacttgaaaattttttacatttt
atcaTTCGTCATACTAAATGTAACATTTTCGTCGGAACTGGGAATGAAAT
CGTTTGGTATCATATCACCATGCCAACAAAATAGATCATCATCTGGGAAT
TTTACTAACAACTCCTCAAATCAATGGCCAATAACGAATCTACCAAACCT
TTCCGAAGCTGTAATCACCACTACAAGCAACTCCATCCTTCGTTACGTCA
TTGAAAAATCCATCAGAACAACACCGAGTTCTTCATCAACCACAAATTTC
ATCTTATACGTCAACATTGACGGCATATTGAATGAAAAGCACGACAATAA
CAAAGTCAGAGAGGAAATCTTCAAACGACGTCACAATCAAGAATTCCAAG
AAATCTATTTTCACATATCTTTAAAAACTCTTCTATATGATATTGAATGG
CttgaaaaatttgttgaaagctTGGTTCAATTATTAAAATCTTTACTCGT
AATTGTTCTCAATGTTGGTTATTTTCTAACTGAACTCATTGTGGGTCGAT
TCTCGTCGAATCTCCTGAATCATCCTAGAGTTATTTGGATAAGTCGACAT
GCCGAGTTGAAGACAGGAGAATTCCCGTTTCGCTATGGATTGGTGCTGGA
ATACGAACATCAATGTGAATCAAGACGCAGAAATAACATgagaaacttga
aaattttttacattttatcaTTCGTCATACTAAATGTAACATTTTCGTCG
GAACTGGGAATGAAATCGTTTGGTATCATATCACCATGCCAACAAAATAG
ATCATCATCTGGGAATTTTACTAACAACTCCTCAAATCAATGGCCAATAA
CGAATCTACCAAACCTTTCCGAAGCTGTAATCACCACTACAAGCAACTCC
ATCCTTCGTTACGTCATTGAAAAATCCATCAGAACAACACCGAGTTCTTC
ATCAACCACAAATTTCATCTTATACGTCAACATTGACGGCATATTGAATG
AAAAGCACGACAATAACAAAGTCAGAGAGGAAATCTTCAAACGACGTCAC
AATCAAGAATTCCAAGAAATCTATTTTCACATATCTTTAAAAACTCTTCT
ATATGATATTGAATGGCttgaaaaatttgttgaaagctTGGTTCAATTAT
TAAAATCTTTACTCGTAATTGTTCTCAATGTTGGTTATTTTCTAACTGAA
CTCATTGTGGGTCGATTCTCGTCGAATCTCCTGAATCATCCTAGAGTTAT
TTGGATAAGTCGACATGCCGAGTTGAAGACAGGAGAATTCCCGTTTCGCT
ATGGATTGGTGCTGGAATACGAACATCAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017107-exon-sc0000259-1491911889:289023..289181 | TCONS_00017107-exon-sc0000259-1491911889:289023..289181 | Clytia hemisphaerica | exon |
| TCONS_00017107-exon-sc0000259-1510915933:289023..289181 | TCONS_00017107-exon-sc0000259-1510915933:289023..289181 | Clytia hemisphaerica | exon |
| TCONS_00017107-exon-sc0000259-1575043694:289023..289181 | TCONS_00017107-exon-sc0000259-1575043694:289023..289181 | Clytia hemisphaerica | exon |
| TCONS_00017107-exon-sc0000259-1491911889:290492..291000 | TCONS_00017107-exon-sc0000259-1491911889:290492..291000 | Clytia hemisphaerica | exon |
| TCONS_00017107-exon-sc0000259-1510915933:290492..291000 | TCONS_00017107-exon-sc0000259-1510915933:290492..291000 | Clytia hemisphaerica | exon |
| TCONS_00017107-exon-sc0000259-1575043694:290492..291000 | TCONS_00017107-exon-sc0000259-1575043694:290492..291000 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259 | supercontig | sc0000259:289023..291000 + |
Blast
The following BLAST results are available for this feature:
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