|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017105 ID=TCONS_00017105|Name=TCONS_00017105|organism=Clytia hemisphaerica|type=transcript|length=1937bp
TTTTCTaactgttttttcttttttatagataAATAAAACATGAGTTCTGC
AATAGGGCCTATTGCAATTGTGATATTTGCTGTTTTTGCAACTGGCTATT
TCATGCAGAGCAAATTACCACCACCCAAACCTACCATTGTAGGTATTGAT
CTTGGAACAACATTTTCCTGTGTTAGTACATATGAATTCAAATCTGGAAA
TGTAACTGTCTACAAAGATGAGAATGGGAAAAATATTATACCAAGTGTTG
TGGCTATTTTAGAAAATGATACACTTGTCGGTTATAAAGCTGTTGATCAA
ATTGAGGTCAATAGTATGAATACAATTTTTGATGCAAAACGGTTTATCgg
caaaacattcacaaaagaggAAATGAATCCTTTAATTACAAATTATGCAT
TTGATGTTGACACAGATGAGAAGGGAAATGCTCTTTTCAAAGTTAAATTG
AAAAATGGAACTAAAGTTTTCTCACCCGAAGATATTGGTGCTATTATTCT
ACGAAAGCTGAAACGTATGGTTGAGTCAGAGATTGATAGAACGATCAAAC
TGGCTGTCATAAGTGTCCCTGCAGATTTTGATGAGATACAGCGCAACGCT
ACCATTGAAGCTGGACGTAGGGCAGGATTGAAAGTTGTGAGGGTTATTAA
TGAACCAACTGCAGCTGCTTTGGCTTATGGTCTTCATAAGAAAGCAGGTA
CCAACGTAGTTATTGTAATTGATTTTGGTGGTGGTACGTTAGATGTATCA
CTCTTGTACGTGCAGGGTGGTATGTTTGTTACTATGGCAATGGCAGGCAA
TAACCGATTGGGTGGACAAGATGTCAATAACAACTTGATTGATTTTTTTC
GCCAAAAGATTGCAGATAAACATGGTGATGTTTTGATTGATGCTAACGAT
TTACAAGTGATTAGAGACCATGTGGAAATCCTTAAGAAAAGTTTAACTGA
TAACGATAAAGCTGtatttcatgtatttttgaaTGCCTTATCAAAAGTAG
ACAATATACCCATTGACTTTGCCTACGAAATGACTAGATTGGAATTTAAT
ACGATTAATAAAGAACTATTTGAAAAAGTATTAAAGCCTGTTGAAACTGT
TCTAGAAGAATCTGAAACCAGAAGACAAGATGTAGATGAAATTGTTCTAG
TTGGAGGCTCAACAAGAATACCACGTGTTCGTGAACTTATTGCTGAATAT
TTCGGTAAAGTACCAAATACTGCTATTGACCCAGATATCGCTGTTGGTAT
TGGGGTTGCAGCTCAAGCAGGAATTATGGGCAATGGCTGGCCGTTGAAGG
TTTCTGCTGTTGAAATTCAAAAccgaaaacttaaaaaagttcaaGTCAGT
TAGGttctatttttaaaatcatttttaggaaaattcagCTTCTTTAACAT
TCTCTCTAACTCTAACTGGCTCACAAAGGTGAAAATTTGTATCAAGCTGT
AGTCTGGATTTTGAATTAGATATTTTCAGCTATATAATTAAAAAacactc
aataaatttgaagcTATGACTCCTCTTAGGTTGGTTTCGAAAATTGAGCT
TTTGATGGAATCATTCCAGTTTTAAGTCAGTTTACGATTTTATTTTGTGA
GGAAGAAAGATTTAgctttgttttttatattttgggaCTTGCCTTTTTTA
AGCCTTTGTCTTCTAAGATTATATATTTTGGAATAATATAtgcattttat
ttatttttgataattcaAGCTTTTTGGtgtttcaatttgatttttaaatt
cgTCGATATTTATTCatgaattttttgttattaaaatCTTCTCAAAGCAA
AGCTGTCGATTTTCTTAAATTCTTGTTTTCATAAAGGTAAAGTTGGAAGT
TTTTATGATGTGCGTAGGGTgatctattgtctataggtcatatttttttt
ctagttCTTTCTAAGGAGTGATTAATTTGTATAAACG Run BLAST on NCBI protein sequence of TCONS_00017105-protein >TCONS_00017105-protein ID=TCONS_00017105-protein|Name=TCONS_00017105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
MSSAIGPIAIVIFAVFATGYFMQSKLPPPKPTIVGIDLGTTFSCVSTYEF
KSGNVTVYKDENGKNIIPSVVAILENDTLVGYKAVDQIEVNSMNTIFDAK
RFIGKTFTKEEMNPLITNYAFDVDTDEKGNALFKVKLKNGTKVFSPEDIG
AIILRKLKRMVESEIDRTIKLAVISVPADFDEIQRNATIEAGRRAGLKVV
RVINEPTAAALAYGLHKKAGTNVVIVIDFGGGTLDVSLLYVQGGMFVTMA
MAGNNRLGGQDVNNNLIDFFRQKIADKHGDVLIDANDLQVIRDHVEILKK
SLTDNDKAVFHVFLNALSKVDNIPIDFAYEMTRLEFNTINKELFEKVLKP
VETVLEESETRRQDVDEIVLVGGSTRIPRVRELIAEYFGKVPNTAIDPDI
AVGIGVAAQAGIMGNGWPLKVSAVEIQNRKLKKVQVS Run BLAST on NCBI transcript from alignment at sc0000259:268915..270928+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017105 ID=TCONS_00017105|Name=TCONS_00017105|organism=Clytia hemisphaerica|type=transcript|length=2014bp|location=Sequence derived from alignment at sc0000259:268915..270928+ (Clytia hemisphaerica)
TTTTCTaactgttttttcttttttatagataAATAAAACATGAGTTCTGC
AATAGGGCCTATTGCAATTGTGATATTTGCTGTTTTTGCAACTGGCTATT
TCATGCAGAGCAAATTACCACCACCCAAACCTACCATTGTAGGTATTGAT
CTTGGAACAACATTTTCCTGTGTTAGTACATATGAATTCAAATCTGGAAA
TGTAACTGTCTACAAAGATGAGAATGGGAAAAATATTATACCAAGTGTTG
TGGCTATTTTAGAAAATGATACACTTGTCGGTTATAAAGCTGTTGATCAA
ATTGAGGTCAATAGTATGAATACAATTTTTGATGCAAAACGGTTTATCgg
caaaacattcacaaaagaggAAATGAATCCTTTAATTACAAATTATGCAT
TTGATGTTGACACAGATGAGAAGGGAAATGCTCTTTTCAAAGTTAAATTG
AAAAATGGAACTAAAGTTTTCTCACCCGAAGATATTGGTGCTATTATTCT
ACGAAAGCTGAAACGTATGGTTGAGTCAGAGATTGATAGAACGATCAAAC
TGGCTGTCATAAGTGTCCCTGCAGATTTTGATGAGATACAGCGCAACGCT
ACCATTGAAGCTGGACGTAGGGCAGGATTGAAAGTTGTGAGGGTTATTAA
TGAACCAACTGCAGCTGCTTTGGCTTATGGTCTTCATAAGAAAGCAGGTA
CCAATGTAGTTATTGTAATTGATTTTGGTGGTGGTACGTTAGATGTATCA
CTCTTGTACGTGCAGNGAAAGCAGGTACCAACGTAGTTATTGTAATTGAT
TTTGGTGGTGGTACGTTAGATGTATCACTCTTGTACGTGCAGGGTGGTAT
GTTTGTTACTATGGCAATGGCAGGCAATAACCGATTGGGTGGACAAGATG
TCAATAACAACTTGATTGATTTTTTTCGCCAAAAGATTGCAGATAAACAT
GGTGATGTTTTGATTGATGCTAACGATTTACAAGTGATTAGAGACCATGT
GGAAATCCTTAAGAAAAGTTTAACTGATAACGATAAAGCTGtatttcatg
tatttttgaaTGCCTTATCAAAAGTAGACAATATACCCATTGACTTTGCC
TACGAAATGACTAGATTGGAATTTAATACGATTAATAAAGAACTATTTGA
AAAAGTATTAAAGCCTGTTGAAACTGTTCTAGAAGAATCTGAAACCAGAA
GACAAGATGTAGATGAAATTGTTCTAGTTGGAGGCTCAACAAGAATACCA
CGTGTTCGTGAACTTATTGCTGAATATTTCGGTAAAGTACCAAATACTGC
TATTGACCCAGATATCGCTGTTGGTATTGGGGTTGCAGCTCAAGCAGGAA
TTATGGGCAATGGCTGGCCGTTGAAGGTTTCTGCTGTTGAAATTCAAAAc
cgaaaacttaaaaaagttcaaGTCAGTTAGGttctatttttaaaatcatt
tttaggaaaattcagCTTCTTTAACATTCTCTCTAACTCTAACTGGCTCA
CAAAGGTGAAAATTTGTATCAAGCTGTAGTCTGGATTTTGAATTAGATAT
TTTCAGCTATATAATTAAAAAacactcaataaatttgaagcTATGACTCC
TCTTAGGTTGGTTTCGAAAATTGAGCTTTTGATGGAATCATTCCAGTTTT
AAGTCAGTTTACGATTTTATTTTGTGAGGAAGAAAGATTTAgctttgttt
tttatattttgggaCTTGCCTTTTTTAAGCCTTTGTCTTCTAAGATTATA
TATTTTGGAATAATATAtgcattttatttatttttgataattcaAGCTTT
TTGGtgtttcaatttgatttttaaattcgTCGATATTTATTCatgaattt
tttgttattaaaatCTTCTCAAAGCAAAGCTGTCGATTTTCTTAAATTCT
TGTTTTCATAAAGGTAAAGTTGGAAGTTTTTATGATGTGCGTAGGGTgat
ctattgtctataggtcatattttttttctagttCTTTCTAAGGAGTGATT
AATTTGTATAAACG Coding sequence (CDS) from alignment at sc0000259:268915..270928+ >TCONS_00017105 ID=TCONS_00017105|Name=TCONS_00017105|organism=Clytia hemisphaerica|type=CDS|length=2628bp|location=Sequence derived from alignment at sc0000259:268915..270928+ (Clytia hemisphaerica)
ATGAGTTCTGCAATAGGGCCTATTGCAATTGTGATATTTGCTGTTTTTGC
AACTGGCTATTTCATGCAGAGCAAATTACCACCACCCAAACCTACCATTG
TAGGTATTGATCTTGGAACAACATTTTCCTGTGTTAGTACATATGAATTC
AAATCTGGAAATGTAACTGTCTACAAAGATGAGAATGGGAAAAATATTAT
ACCAAGTGTTGTGGCTATTTTAGAAAATGATACACTTGTCGGTTATAAAG
CTGTTGATCAAATTGAGGTCAATAGTATGAATACAATTTTTGATGCAAAA
CGGTTTATCggcaaaacattcacaaaagaggAAATGAATCCTTTAATTAC
AAATTATGCATTTGATGTTGACACAGATGAGAAGGGAAATGCTCTTTTCA
AAGTTAAATTGAAAAATGGAACTAAAGTTTTCTCACCCGAAGATATTGGT
GCTATTATTCTACGAAAGCTGAAACGTATGGTTGAGTCAGAGATTGATAG
AACGATCAAACTGGCTGTCATAAGTGTCCCTGCAGATTTTGATGAGATAC
AGCGCAACGCTACCATTGAAGCTGGACGTAGGGCAGGATTGAAAGTTGTG
AGGGTTATTAATGAACCAACTGCAGCTGCTTTGGCTTATGGTCTTCATAA
GAAAGCAGGTACCAACGTAGTTATTGTAATTGATTTTGGTGGTGGTACGT
TAGATGTATCACTCTTGTACGTGCAGGGTGGTATGTTTGTTACTATGGCA
ATGGCAGGCAATAACCGATTGGGTGGACAAGATGTCAATAACAACTTGAT
TGATTTTTTTCGCCAAAAGATTGCAGATAAACATGGTGATGTTTTGATTG
ATGCTAACGATTTACAAGTGATTAGAGACCATGTGGAAATCCTTAAGAAA
AGTTTAACTGATAACGATAAAGCTGtatttcatgtatttttgaaTGCCTT
ATCAAAAGTAGACAATATACCCATTGACTTTGCCTACGAAATGACTAGAT
TGGAATTTAATACGATTAATAAAGAACTATTTGAAAAAGTATTAAAGCCT
GTTGAAACTGTTCTAGAAGAATCTGAAACCAGAAGACAAGATGTAGATGA
AATTGTTCTAGTTGGAGGCTCAACAAGAATACCACGTGTTCGTGAACTTA
TTGCTGAATATTTCGGTAAAGTACCAAATACTGCTATTGACCCAGATATC
GCTGTTGGTATTGGGGTTGCAGCTCAAGCAGGAATTATGGGCAATGGCTG
GCCGTTGAAGGTTTCTGCTGTTGAAATTCAAAAccgaaaacttaaaaaag
ttcaaGTCAGTTAGATGAGTTCTGCAATAGGGCCTATTGCAATTGTGATA
TTTGCTGTTTTTGCAACTGGCTATTTCATGCAGAGCAAATTACCACCACC
CAAACCTACCATTGTAGGTATTGATCTTGGAACAACATTTTCCTGTGTTA
GTACATATGAATTCAAATCTGGAAATGTAACTGTCTACAAAGATGAGAAT
GGGAAAAATATTATACCAAGTGTTGTGGCTATTTTAGAAAATGATACACT
TGTCGGTTATAAAGCTGTTGATCAAATTGAGGTCAATAGTATGAATACAA
TTTTTGATGCAAAACGGTTTATCggcaaaacattcacaaaagaggAAATG
AATCCTTTAATTACAAATTATGCATTTGATGTTGACACAGATGAGAAGGG
AAATGCTCTTTTCAAAGTTAAATTGAAAAATGGAACTAAAGTTTTCTCAC
CCGAAGATATTGGTGCTATTATTCTACGAAAGCTGAAACGTATGGTTGAG
TCAGAGATTGATAGAACGATCAAACTGGCTGTCATAAGTGTCCCTGCAGA
TTTTGATGAGATACAGCGCAACGCTACCATTGAAGCTGGACGTAGGGCAG
GATTGAAAGTTGTGAGGGTTATTAATGAACCAACTGCAGCTGCTTTGGCT
TATGGTCTTCATAAGAAAGCAGGTACCAACGTAGTTATTGTAATTGATTT
TGGTGGTGGTACGTTAGATGTATCACTCTTGTACGTGCAGGGTGGTATGT
TTGTTACTATGGCAATGGCAGGCAATAACCGATTGGGTGGACAAGATGTC
AATAACAACTTGATTGATTTTTTTCGCCAAAAGATTGCAGATAAACATGG
TGATGTTTTGATTGATGCTAACGATTTACAAGTGATTAGAGACCATGTGG
AAATCCTTAAGAAAAGTTTAACTGATAACGATAAAGCTGtatttcatgta
tttttgaaTGCCTTATCAAAAGTAGACAATATACCCATTGACTTTGCCTA
CGAAATGACTAGATTGGAATTTAATACGATTAATAAAGAACTATTTGAAA
AAGTATTAAAGCCTGTTGAAACTGTTCTAGAAGAATCTGAAACCAGAAGA
CAAGATGTAGATGAAATTGTTCTAGTTGGAGGCTCAACAAGAATACCACG
TGTTCGTGAACTTATTGCTGAATATTTCGGTAAAGTACCAAATACTGCTA
TTGACCCAGATATCGCTGTTGGTATTGGGGTTGCAGCTCAAGCAGGAATT
ATGGGCAATGGCTGGCCGTTGAAGGTTTCTGCTGTTGAAATTCAAAAccg
aaaacttaaaaaagttcaaGTCAGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017105-exon-sc0000259-1491911889:268915..269611 | TCONS_00017105-exon-sc0000259-1491911889:268915..269611 | Clytia hemisphaerica | exon |
| TCONS_00017105-exon-sc0000259-1510915933:268915..269611 | TCONS_00017105-exon-sc0000259-1510915933:268915..269611 | Clytia hemisphaerica | exon |
| TCONS_00017105-exon-sc0000259-1575043694:268915..269611 | TCONS_00017105-exon-sc0000259-1575043694:268915..269611 | Clytia hemisphaerica | exon |
| TCONS_00017105-exon-sc0000259-1491911889:269689..270928 | TCONS_00017105-exon-sc0000259-1491911889:269689..270928 | Clytia hemisphaerica | exon |
| TCONS_00017105-exon-sc0000259-1510915933:269689..270928 | TCONS_00017105-exon-sc0000259-1510915933:269689..270928 | Clytia hemisphaerica | exon |
| TCONS_00017105-exon-sc0000259-1575043694:269689..270928 | TCONS_00017105-exon-sc0000259-1575043694:269689..270928 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259 | supercontig | sc0000259:268915..270928 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00017105 vs. Swiss-Prot (Human)
Match: HSP13 (Heat shock 70 kDa protein 13 OS=Homo sapiens GN=HSPA13 PE=1 SV=1) HSP 1 Score: 358.992 bits (920), Expect = 5.048e-116 Identity = 210/466 (45.06%), Postives = 287/466 (61.59%), Query Frame = 1
Query: 40 MSSAIGPIAIVIFAVFATGYFMQSKLPPPKPTIVGIDLGTTFSCVSTYEFKSGNVTVYKDENGKNIIPSVVAILENDTLVGYKAVDQIEVNSMNTIFDAKRFIGKTFTKEEMNPLITNYAFDVDTDEKGNALFKVKLKNGTKVFSPEDIGAIILRKLKRMVESEIDRTIKLAVISVPADFDEIQRNATIEAGRRAGLKVVRVINEPTAAALAYGLHKKAGTNVVIVIDFGGGTLDVSLLYVQGGMFVTMAMAGNNRLGGQDVNNNLIDFFRQKIADKHGDVLIDANDLQVIRDHVEILKKSLTDNDKAVFHVFL-------------------NALSKVDNIPID------------------FAYEMTRLEFNTINKELFEKVLKPVETVLEESETRRQDVDEIVLVGGSTRIPRVRELIAEYFGKVPNTAIDPDXXXXXXXXXXXXXXXNGWPLKVSAVEIQNR 1326
M+ + + + + GY Q LP P P ++GIDLGTT+ V + +G V V DENG IPS+V+ +ND VGY++V+ + N NTI+DAKRFIGK FT EE+ I Y F V ++ G F V N T SPE +G+ +L KLK M E+ + + AVISVPA+FD QRN+TIEA AGLK++RVINEPTAAA+AYGLH KA V+VID GGGTLDVSLL QGGMF+T AM+GNN+LGGQD N L+ + ++I +G V ++ +R VE++K +LT + A V L + LS D+ ++ F E++R F+T+N++LF+K+L P++ VL+E + ++DE+VLVGGSTRIPR+R++I E+FGK PNT++DPD+AV GVA QAGI G WPL+VSA+EI N+
Sbjct: 1 MAREMTILGSAVLTLLLAGYLAQQYLPLPTPKVIGIDLGTTYCSVGVFFPGTGKVKVIPDENGHISIPSMVSFTDNDVYVGYESVELADSNPQNTIYDAKRFIGKIFTAEELEAEIGRYPFKV-LNKNGMVEFSVT-SNETITVSPEYVGSRLLLKLKEMAEAYLGMPVANAVISVPAEFDLKQRNSTIEAANLAGLKILRVINEPTAAAMAYGLH-KADVFHVLVIDLGGGTLDVSLLNKQGGMFLTRAMSGNNKLGGQDFNQRLLQYLYKQIYQTYGFVPSRKEEIHRLRQAVEMVKLNLTLHQSAQLSVLLTVEEQDRKEPHSSDTELPKDKLSSADDHRVNSGFGRGLSDKKSGESQVLFETEISRKLFDTLNEDLFQKILVPIQQVLKEGHLEKTEIDEVVLVGGSTRIPRIRQVIQEFFGKDPNTSVDPDLAVVTGVAIQAGIDGGSWPLQVSALEIPNK 463
The following BLAST results are available for this feature:
|
