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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017104 ID=TCONS_00017104|Name=TCONS_00017104|organism=Clytia hemisphaerica|type=transcript|length=1862bp
atttttgattgtTCACATCCAGTAAGATTTTTTGTGAAACCAGTTGCTTG
ACTATAAAATACTTTTTCCTAAaccaaaacattttctttaCCCTTCttct
caaaacattttttcatttgagttaaAATAGTCTCTAGCCTTCTATCAATT
GCTAGCAAGTGATCTTTAGTCAATACGGGATAAATAGGGTCTGATGCTAA
TTTCTTTTCAAGAGTTTGGCTCAAGGAAATCTCAGTTTGCTCGTCAGTGA
TGTATGAACTTATTACTAGATATGTTTGATGTCTTAGTGTACAACATTGC
ATCAATGGGGCTAGGATACTAAGCTCGTCATGATTAGGGTTCCCAAAACT
TTTGCCATTATCTAAATGTATGACCATACTTGTATCTTTGTTTCTCGTAA
ATTCATAATGATGTCTATCTGCATTaccaatcaaaaaatcaaatattgAT
GTGTCCATTAAGTCTAGCAATCTTGGTCCTTGATCATAAGGAGGCTTTGT
AATAACATTATCGCAATAATTTGAATCAATCTCCCATTTTGCTTTTCTAT
TTTTACGATAGGTTCTTTGCCACGGGTGTCtcattttataaagtttgacA
TGTTTTGGGAGCCATAGAGTGAGTGAAGCTTCCATTATTTCCCCTTTACC
ACAGGCAGATTCTTCCCTTTTGCAATACatacattttccaaaaaaacaaa
tattgTTTGAATTGTCTCTCCAAAAAGTATCCAGCAGTGAGGTTTGAGCA
ACATTTATTACTTCTTCTCTCAAATTAACTAATCTACCGACAACTGGAGG
AGCTCTATTGAATCCTAGGATTCTATCTAAATGAAATGCAGCTATTTCGC
CATTGTGTCTATCATAGCCTTCATATGGGGTTCCGCCAAGAATTTTGTCT
CTTGAGTAACGCTTTGGTTTAAAAACCACCTCTTGTTTCTTAAGTGGTGG
TCCATCAAGAACaaactgtgcttttaattgtgTTCCCTTAACTCCAACTT
TTGCttgtaatatttttgttttagccATTGCATTCAGTATCATGTCTACT
TGAAGATCAGAGATACTAGTTATGGCTCGAGCTTCTGGCATTTCTTTCCA
GATAATCCATGGATGTATTTTCTCCTCAGTTGCAACAGAATCTGTTGATC
TTTTAGTGTTTTGCCaagtgttttgttttgaattaaagTGAAGAAGACAC
AAGACAAAAACACTGACAACAATCAGGGAAAATCTTTGTTTCCACTTCAT
tgcaaaaatgtgaaaaagaaatCCACAAACAGTCAAACCCACCAAATGCC
AAACAAAAAATGATCAGCACACAAGACAAAAACACTGACAACAATCAGGG
AAAATCTTTGTTTCCACTTCATtgcaaaaatgtgaaaaagaaatCCACAA
ACAGTCAAACCCACCAAATGCCAAACAAAAAATGATCAGCACACATCCAA
GTAGAAAGAGTTTTTAGCATTCAGAGAGCAGCAGAGAgcgataaaatttg
aaaaaaaaaatcttacaacGTGTCGTATAATACCATAAAAGATTACAACA
TAGTTTTCTACTTTTTGAATTGCACAAGCAACCCCACCAGTCTTctattt
gttgaaaaaaaacttgttaagaaagttttttaaaatctCCATTTACTTCT
TGGTTTGACAGAAAGTGAAAGTGGATTGTTACGCATGTGGGAAATCTTGA
CAACTCATATTTTTGAGCTCCACCGTGGTGGCTTTCGGCACAAATTCATC
CAATAATCTGGTTGTTCACATTTGAAATCATCTACGAAGAAGCTTATACT
TTTATTCTTTTGATTGGTTCTTGTAATTTTGTCTTGATTAGCTCTGCTAC
TTGCTATAAATA Run BLAST on NCBI transcript from alignment at sc0000259:262540..265047+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017104 ID=TCONS_00017104|Name=TCONS_00017104|organism=Clytia hemisphaerica|type=transcript|length=2508bp|location=Sequence derived from alignment at sc0000259:262540..265047+ (Clytia hemisphaerica)
atttttgattgtTCACATCCAGTAAGATTTTTTGTGAAACCAGTTGCTTG
ACTATAAAATACTTTTTCCTAAaccaaaacattttctttaCCCTTCttct
caaaacattttttcatttgagttaaAATAGTCTCTAGCCTTCTATCAATT
GCTAGCAAGTGATCTTTAGTCAATACGGGATAAATAGGGTCTGATGCTAA
TTTCTTTTCAAGAGTTTGGCTCAAGGAAATCTCAGTTTGCTCGTCAGTGA
TGTATGAACTTATTACTAGATATGTTTGATGTCTTAGTGTACAACATTGC
ATCAATGGGGCTAGGATACTAAGCTCGTCATGATTAGGGTTCCCAAAACT
TTTGCCATTATCTAAATGTATGACCATACTTGTATCTTTGTTTCTCGTAA
ATTCATAATGATGTCTATCTGCATTaccaatcaaaaaatcaaatattgAT
GTGTCCATTAAGTCTAGCAATCTTGGTCCTTGATCATAAGGAGGCTTTGT
AATAACATTATCGCAATAATTTGAATCAATCTCCCATTTTGCTTTTCTAT
TTTTACGATAGGTTCTTTGCCACGGGTGTCtcattttataaagtttgacA
TGTTTTGGGAGCCATAGAGTGAGTGAAGCTTCCATTATTTCCCCTTTACC
ACAGGCAGATTCTTCCCTTTTGCAATACatacattttccaaaaaaacaaa
tattgTTTGAATTGTCTCTCCAAAAAGTATCCAGCAGTGAGGTTTGAGCA
ACATTTATTACTTCTTCTCTCAAATTAACTAATCTACCGACAACTGGAGG
AGCTCTATTGAATCCTAGGATTCTATCTAAATGAAATGCAGCTATTTCGC
CATTGTGTCTATCATAGCCTTCATATGGGGTTCCGCCAAGAATTTTGTCT
CTTGAGTAACGCTTTGGTTTAAAAACCACCTCTTGTTTCTTAAGTGGTGG
TCCATCAAGAACaaactgtgcttttaattgtgTTCCCTTAACTCCAACTT
TTGCttgtaatatttttgttttagccATTGCATTCAGTATCATGTCTACT
TGAAGATCAGAGATACTAGTTATGGCTCGAGCTTCTGGCATTTCTTTCCA
GATAATCCATGGATGTATTTTCTCCTCAGTTGCAACAGAATCTGTTGATC
TTTTAGTGTTTTGCCaagtgttttgttttgaattaaagTGAAGAAGACAC
AAGACAAAAACACTGACAACAATCAGGGAAAATCTTTGTTTCCACTTCAT
tgcaaaaatgtgaaaaagaaatCCACAAACAGTCAAACCCACCAAATGCC
AAACAAAAAATGATCAGCACACATCCAAGTAGAAAGAGTTTTTAGCATTC
AGAGAGCAGCAGAGAgcgataaaatttgaaaaaaaaaatcttacaacGTG
TCGTATAATACCATAAAAGATTACAACATAGTTTTCTACTTTNAACatac
attttccaaaaaaacaaatattgTTTGAATCGTCTCTCCAAAAAGTATCC
AGCAGTGAGGTTTGAGCAACATTTATTACTTCTTCTCTCAAATTAACTAA
TCTACCAACAACTGGAGGAGCTCTATTGAATCCTAGGATTCGATCTAAAT
GAAATGCAGCTATTTCGCCATTGTGTCTATCATAGCCTTCATACGGGGTT
CCGTCAAGAATTTTGTCTCTTGGGTAACGCTTTGGTTTAAAAACCACCTC
TTGTTTCTTAAGTGGTGGTCCATCAAGAACaaactgtgcttttaattgtg
TTCCCTTAACTCCAACTTTTGCttgtaatatttttgttttagccATTGCA
TTCAGTATCATGTCTACTTGAAGATCAGAGATACTAGTTATGGCTCGAGC
TTCTGGCATTTCTTTCCAGATAATCCATGGATGTATTTTCTCCTCAGTTG
CAACAGAATCTGTTGATCTTTTAGTGTTTTGCCaagtgttttgttttgaa
ttaaagTGAAGAAGACACAAGACAAAAACACTGACAACAATCAGGGAAAA
TCTTTGTTTCCACTTCATtgcaaaaatgtgaaaaagaaatCCACAAACAG
TCAAACCCACCAAATGCCAAACAAAAAATGATCAGCACACATCCAAGTAG
AAAGAGTTTTTAGCATTCAGAGAGCAGCAGAGAgcgataaaatttgaaaa
aaaaaatcttacaacGTGTCGTATAATACCATAAAAGATTACAACATAGT
TTTCTACTTTTTGAATTGCACAAGCAACCCCACCAGTCTTctatttgttg
aaaaaaaacttgttaagaaagttttttaaaatctCCATTTACTTCTTGGT
TTGACAGAAAGTGAAAGTGGATTGTTACGCATGTGGGAAATCTTGACAAC
TCATATTTTTGAGCTCCACCGTGGTGGCTTTCGGCACAAATTCATCCAAT
AATCTGGTTGTTCACATTTGAAATCATCTACGAAGAAGCTTATACTTTTA
TTCTTTTGATTGGTTCTTGTAATTTTGTCTTGATTAGCTCTGCTACTTGC
TATAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017104-exon-sc0000259-1491911889:262540..263861 | TCONS_00017104-exon-sc0000259-1491911889:262540..263861 | Clytia hemisphaerica | exon |
| TCONS_00017104-exon-sc0000259-1510915933:262540..263861 | TCONS_00017104-exon-sc0000259-1510915933:262540..263861 | Clytia hemisphaerica | exon |
| TCONS_00017104-exon-sc0000259-1575043694:262540..263861 | TCONS_00017104-exon-sc0000259-1575043694:262540..263861 | Clytia hemisphaerica | exon |
| TCONS_00017104-exon-sc0000259-1491911889:264508..265047 | TCONS_00017104-exon-sc0000259-1491911889:264508..265047 | Clytia hemisphaerica | exon |
| TCONS_00017104-exon-sc0000259-1510915933:264508..265047 | TCONS_00017104-exon-sc0000259-1510915933:264508..265047 | Clytia hemisphaerica | exon |
| TCONS_00017104-exon-sc0000259-1575043694:264508..265047 | TCONS_00017104-exon-sc0000259-1575043694:264508..265047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259 | supercontig | sc0000259:262540..265047 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009581 | FAM20_C |
Blast
BLAST of TCONS_00017104 vs. Swiss-Prot (Human)
Match: XYLK (Glycosaminoglycan xylosylkinase OS=Homo sapiens GN=FAM20B PE=1 SV=1) HSP 1 Score: 370.933 bits (951), Expect = 8.386e-122 Identity = 186/356 (52.25%), Postives = 241/356 (67.70%), Query Frame = -1
Query: 48 PWIIWKEMPEARAITSISDLQVDMILNAMAKTKILQAKVGVKGTQLKAQFVLDGPPLKKQEVVFKPKRYSRDKILGGTPYEGYDRHNGEIAAFHLDRILGFNRAPPVVGRLVNLREEVINVAQTSLLDTFWRDNSNNICFFGKCMYCKREESACGKGEIMEASLTLWLPKHVKLYKMRHPWQRTYRKNRKAKWEIDSNYCDNVITKPPYDQGPRLLDLMDTSIFDFLIGNADRHHYE-FTRNKDTSMVIHLDNGKSFGNPNHDELSILAPLMQCCTLRHQTYLVISSYITDEQTEISLSQTLEKKLASDPIYPVLTKDHLLAIDRRLETILTQMKKCFEKKGKENVLV*EKVFYSQ 1112
PW I + R + ++ +++AMA KI++A VG KGTQLKA +L+G Q+VVFKPKRYSRD ++ G PY GYDRHN E+AAFHLDRILGF+RAP VVGR VNLR E+ VA LL TF NN CF+GKC YC+ E AC G+IME S+TLWLP L K RHPW RTYR+ + A+WE D +YCD V PYD GPRLLD++DT++FD+LIGNADRHHYE F ++ SM+I LDN KSFGNP+ DE SILAPL QCC +R T+ + +Y+ + L L+ +A DPI PVL+ HL A+D+RL ++L +K+C ++ G + VLV +++ S
Sbjct: 63 PWEIAAQWVVPREVYPEETPELGAVMHAMATKKIIKADVGYKGTQLKALLILEG----GQKVVFKPKRYSRDHVVEGEPYAGYDRHNAEVAAFHLDRILGFHRAPLVVGRFVNLRTEIKPVATEQLLSTFLT-VGNNTCFYGKCYYCRETEPACADGDIMEGSVTLWLPDVWPLQKHRHPWGRTYREGKLARWEYDESYCDAVKKTSPYDSGPRLLDIIDTAVFDYLIGNADRHHYESFQDDEGASMLILLDNAKSFGNPSLDERSILAPLYQCCIIRVSTWNRL-NYLKNG----VLKSALKSAMAHDPISPVLSDPHLDAVDQRLLSVLATVKQCTDQFGMDTVLVEDRMPLSH 408
The following BLAST results are available for this feature:
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