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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017102 ID=TCONS_00017102|Name=TCONS_00017102|organism=Clytia hemisphaerica|type=transcript|length=941bp
TTGTTTTGGAAGTGTTGTTATTTTCGGCTGTAGAAATCTCGCTGACGTCG
GCAATTTTACTCACGCTCAACCAACATATCTTTTTACGAAATTAGTGCGT
GGTGTATGGTAGCGCAAGTTTTTCGTATTCGACTTTCAtgaactgaaaat
ggctgaatGATGGTGATGAGAGAAAAATCAGGTGGCTATGCAAATACTTA
ACTTTGAAGAAAACAGTGGAATGGATTTCTTAATCAGCTGTTCCAAAGTT
TACGCAAGCTAAGCAAAAGAGAGGGAAATATCGAAGAAAGCAAATAACTC
ATACATCAAAATGACGTAATTGGTTTCGCTTGAATTGAAATCGAATGTTG
CTGGAGGCCTGGGTTCTAATGGTTAGTCGTTTGGAAAGCTTAATGATATC
ATGATCTCTACACATTTTATAATTATAAATGGTTGTTTAATTTGTTAGTG
ACGTCATTTCAAAAGACAATTAAGTAATTTTTTGTGGTGTATCATTAAGA
ATTTGTAAATTCTTGCAAAGCATGAACAATTTTCTTGTGGTAATTAGAGC
ATTCATATTTTATGATTAAATTAATTATTGTAACGATATAAACAGAAACA
ATAAAATCGTAATTAAGTTGACAAAACGATATTGAATTTTTCAccttatt
tttctttaattttatatattcttcctttttttataagaaatattaTAACA
TTATATGTTTTTGTTGACTatctttgaatctttttttctcTTGTCCAACT
CATACATTTAAAATCGTGATAGTTAGAGTCCTTGTACAGGCTTCTTTAGG
AAAATGttgtaaaaaatcaaagtttttaagattataTTTAGGCTGCTCCC
CGAGTTAGTCTGTCTCCAGGCTGCCTCCCGGGGTCTAGCTgtctatatat
tttttaaagaagatatgaagcagattttttttttgatttgt Run BLAST on NCBI transcript from alignment at sc0000259:169265..171116+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017102 ID=TCONS_00017102|Name=TCONS_00017102|organism=Clytia hemisphaerica|type=transcript|length=1852bp|location=Sequence derived from alignment at sc0000259:169265..171116+ (Clytia hemisphaerica)
TTGTTTTGGAAGTGTTGTTATTTTCGGCTGTAGAAATCTCGCTGACGTCG
GCAATTTTACTCACGCTCAACCAACATATCTTTTTACGAAATTAGTGCGT
GGTGTATGGTAGCGCAAGTTTTTCGTATTCGACTTTCAGTATGTATTTCT
ATCCTGACTTGATGTTGATATTGTTCTATGAGTAGCATTTAGTTTTTATT
tggtttcttttaaaaatatacaTTATATGTAAACAAATATCCAAAACAAG
GGTCtgttaattttcttttcattttttaagcGTGCAGATGAGTGAAGAGA
GATGGGTTCTATAAAAGTGGGTGGAAGGTGATTTTTTGCGTAAGATCGGG
CCattcccagtctttttttttttgtttgattaatTTTGTTTGCATTTAAC
AATAGTTTGAAGATAAACAATGCTTTGCACGTGTGCACTTATTTTCTATT
GTTGCTTTTATTGAGTGTTCTACTTATTTTGcaaatcaaaatgtttttgt
gaGTGGGCGTTTTCCACACCTAGCTATAAGCAAACATTTAAATAAATAGT
CGTTAAAAAGCTATTATCTTTTCTTTGTGCCTCAAGTATCTGTTTAAACA
gcaatttttgagcaatttttaaACAACTATTTTGCTAATTAATAGCTCGT
TTAGCAAAAGAAACATGCCGAAAAGCTACGCAGCTAAGAAATCAGTTTTC
TGGCTTTTGACCTGAAAATTTTTACCAAATATGGTGTGGACAGAAAACGA
GACGGGGGTTATGCTTAAGGGTCTTGAGAGGGGCGGTAGAATTCGTGTTT
TACTGTATCACgtacaaatttttctttttccacaTCAAATTGAAATTTGT
AAACCAAATCCATTGTTATCCTTTCTGCCCTTTTCTTTTTAATACCTTTT
TGAATCCCTAATGACATTAAAATACTACTTTAATATCCTTTTTCCCTCAA
AATAAGCAAATATTTGAAGATAATCTCAAACATTAACGATAAAAAGAAAG
tctattttgtattttcttatcAAAGTGTTTcctttttctcattttgtagt
gaactgaaaatggctgaatGATGGTGATGAGAGAAAAATCAGGTGGCTAT
GCAAATACTTAACTTTGAAGAAAACAGTGGAATGGATTTCTTAATCAGCT
GTTCCAAAGTTTACGCAAGCTAAGCAAAAGAGAGGGAAATATCGAAGAAA
GCAAATAACTCATACATCAAAATGACGTAATTGGTTTCGCTTGAATTGAA
ATCGAATGTTGCTGGAGGCCTGGGTTCTAATGGTTAGTCGTTTGGAAAGC
TTAATGATATCATGATCTCTACACATTTTATAATTATAAATGGTTGTTTA
ATTTGTTAGTGACGTCATTTCAAAAGACAATTAAGTAATTTTTTGTGGTG
TATCATTAAGAATTTGTAAATTCTTGCAAAGCATGAACAATTTTCTTGTG
GTAATTAGAGCATTCATATTTTATGATTAAATTAATTATTGTAACGATAT
AAACAGAAACAATAAAATCGTAATTAAGTTGACAAAACGATATTGAATTT
TTCAccttatttttctttaattttatatattcttcctttttttataagaa
atattaTAACATTATATGTTTTTGTTGACTatctttgaatctttttttct
cTTGTCCAACTCATACATTTAAAATCGTGATAGTTAGAGTCCTTGTACAG
GCTTCTTTAGGAAAATGttgtaaaaaatcaaagtttttaagattataTTT
AGGCTGCTCCCCGAGTTAGTCTGTCTCCAGGCTGCCTCCCGGGGTCTAGC
Tgtctatatattttttaaagaagatatgaagcagattttttttttgattt
gt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017102-exon-sc0000259-1491911889:169265..169402 | TCONS_00017102-exon-sc0000259-1491911889:169265..169402 | Clytia hemisphaerica | exon |
| TCONS_00017102-exon-sc0000259-1510915933:169265..169402 | TCONS_00017102-exon-sc0000259-1510915933:169265..169402 | Clytia hemisphaerica | exon |
| TCONS_00017102-exon-sc0000259-1575043694:169265..169402 | TCONS_00017102-exon-sc0000259-1575043694:169265..169402 | Clytia hemisphaerica | exon |
| TCONS_00017102-exon-sc0000259-1491911889:170314..171116 | TCONS_00017102-exon-sc0000259-1491911889:170314..171116 | Clytia hemisphaerica | exon |
| TCONS_00017102-exon-sc0000259-1510915933:170314..171116 | TCONS_00017102-exon-sc0000259-1510915933:170314..171116 | Clytia hemisphaerica | exon |
| TCONS_00017102-exon-sc0000259-1575043694:170314..171116 | TCONS_00017102-exon-sc0000259-1575043694:170314..171116 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000259 | supercontig | sc0000259:169265..171116 + |
Blast
The following BLAST results are available for this feature:
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