Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017100 ID=TCONS_00017100|Name=TCONS_00017100|organism=Clytia hemisphaerica|type=transcript|length=1398bpRun BLAST on NCBI transcript from alignment at sc0000259:147367..171116+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017100 ID=TCONS_00017100|Name=TCONS_00017100|organism=Clytia hemisphaerica|type=transcript|length=23750bp|location=Sequence derived from alignment at sc0000259:147367..171116+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00017100 vs. Swiss-Prot (Human)
Match: TATD3 (Putative deoxyribonuclease TATDN3 OS=Homo sapiens GN=TATDN3 PE=1 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 3.673e-65 Identity = 103/158 (65.19%), Postives = 127/158 (80.38%), Query Frame = 1 Query: 85 VGLDFTPRYITCKEDKEEQRNVFRKQIGIAKQFNIPVNVHSRSAGRPVIDILMEEGADKVVLHAFDGNVKVAMRGVEAGYYFSVPPSIIRSEQKQKLVSKIPLSNLLLETDAPALGPEKMVRNVPSNILISCQEIARIKGFSCDEVIEETTKNAKHLF 558 VGLDF+PR+ E KEEQR V +QI +AK+ N+PVNVHSRSAGRP I++L E+GA+KV+LHAFDG VAM GV AGY+FS+PPSIIRS QKQKLV ++PL+++ LETD+PALGPEK VRN P NI IS + IA++KG S +EVIE TT+NA LF Sbjct: 108 VGLDFSPRFAGTGEQKEEQRQVLIRQIQLAKRLNLPVNVHSRSAGRPTINLLQEQGAEKVLLHAFDGRPSVAMEGVRAGYFFSIPPSIIRSGQKQKLVKQLPLTSICLETDSPALGPEKQVRNEPWNISISAEYIAQVKGISVEEVIEVTTQNALKLF 265 The following BLAST results are available for this feature:
BLAST of TCONS_00017100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|