TCONS_00017042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017042
Unique NameTCONS_00017042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2144

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017042 ID=TCONS_00017042|Name=TCONS_00017042|organism=Clytia hemisphaerica|type=transcript|length=2144bp
acAGAGTGAAGAAGTAAAAGAACAAGATCGCAATTATCCATAATGCTATT
GTTCAACCCAGAATGCAAGACGTCTCTTTTCCCGCCACGTGACTATCAAA
ACATCAAAGACATTTTCCTTCTGACTTTCAACTGCGTGgtagccattttg
aatttcacgTTAAATTCGCTCGTCATTTTCATGATTATCAAGACCAGACA
ATACCACAACAAATCTGTCCTTCTGGTCCTCATTTTATCATGCTCTGACG
TCATCACTGCGCTTGTCAGTCAACCGCTCATCGTCTACATGTTATACGTC
AAATCCTTTTACACCATTTCTTGCAATTTATCGATAACGCTACAGTTCAT
GTTCTTTTTTTCGCCTTATTTCTCCGTTTTTACGATCGCTTTCATTGTTT
ACGACCGATATTTACGAATCACTTATCTCAACAAATACGACAAATATATG
ACGAAATACCGATTCATGTTTGGTGTTTTCTTAGTTTTATGTGCTACCAT
GTTTCAAAACATCATCGTTGTCATAGCAACATTGAAAGAATCAACAGAAT
TAGGTGGTTGGGCTGTATTACCTTTAAACGTTTTAACGCTGCTATTCGAA
TTCACCGCATACACCAAAACCATTTATAAGTTACGACAGTACAAGAAAGA
ATgcaagaaaaagaattttcatacGGTAGCCGAGAATTCATTCACACGTT
TAGCTGCAGGCTACCTTCTTATGATTCTGATGTTTTTCACACCTTTTATG
GTTGTGAATACTGTGTATGCTACATATCCAAAAACCAGCCAATCATATCT
CGATATTCAGTACACGTGGTTGATGACGCAAATCCTCTATTGTTTTAACT
CTTTCGCAAATGCCGCCATCTTTCTTCGTATAAACCGGAAAGCGAAAGTG
GCGTTGAAAATTTTCTTGCAGagatgtttgaaaacgaggctggagCATGC
GCAGAAGAGGAATgtctatcatttaggaatgaCAACATTGAGAAGAGAGA
AAAGTATCTCTTTTGATTTGAATAATAACAATTCGTCTTTTTGTCGCACT
GAATCTACAAAATGTTAATGATGAGCAGAATATAGTTCAACCCTTTCGGC
AAAACTTAAAGTGCTTCAAATGTAAAACAATGATTTTCGAAGTGTGTTCC
GGATGGaaaaatgggctgttccattaaaaatttatttttatacttttaaG
TGACGGTGGACGAACTGTCTTTTACCTCCTGGAAAAGTTATTCCTAGAAT
Aactatttaccccctggaaaatgaaaaaaacagccctttagaccccctgg
aaattcttctcaggttaccccctggaaatgttcatccaccccctgtatgg
atataaaacggaatGGCCCAATCTTTCGAGGCTTTCCTTTAACATGGACA
TTTGTCTTTCTAaatatgaaacttttttttctgggcaatcaaaacttttc
ccctaactttttcagttttcaacGCAATAAGTGAAGAAAATTCAGGGTTC
GTTGGCGAGTTGGGATTTTCTGACCTTATCGTAGCAGGTACCTATGATCG
TAGTGTGGGTAGTTGTGTGGACCTTTTACAGATATGATCGGGAGTCAAAT
TTTAGGaagcaaaaattgaaattaacaCGAGTTTCTATTGCTAGAAGGAG
TACATACACTTACACAGGCAAGAGTAAGAAATATGAAAAGGAAATCAACC
GAATAGTCCTGTGATGTTCTCCTTTCTCATCCGAAAGGCGTTTAGAATTC
TTTTAACAGCAAAGTGcatttctttatattttcatattatcttcttcaaa
atttaatatttaCATCCAAAATTTTATGTGACAATAATAATAAATGtatt
atttttaaagaattgtttatgtacatttttaaaagaaaactaaaacggta
taaattaaatcaaaatgcTTACAAAATTGATGACAAACCCACCCTGTTTG
AAAGAAAATGGAGTAACGCAGAATTTAACTTTTTCCACGGAATTAGTTTC
AATTATTTGCAGAAAATTTGTTGACGCCTGATCGGAAAAACCTTAAGCAT
CACAATCAAAGTTGTTATGCTGCTGAATgcaccttttcgaccatagcCTC
CAATTGCCGCGCCGTCATTTATTTGTCCGCTTTTTCCTAGTTTG
Run BLAST on NCBI

protein sequence of TCONS_00017042-protein

>TCONS_00017042-protein ID=TCONS_00017042-protein|Name=TCONS_00017042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=341bp
MLLFNPECKTSLFPPRDYQNIKDIFLLTFNCVVAILNFTLNSLVIFMIIK
TRQYHNKSVLLVLILSCSDVITALVSQPLIVYMLYVKSFYTISCNLSITL
QFMFFFSPYFSVFTIAFIVYDRYLRITYLNKYDKYMTKYRFMFGVFLVLC
ATMFQNIIVVIATLKESTELGGWAVLPLNVLTLLFEFTAYTKTIYKLRQY
KKECKKKNFHTVAENSFTRLAAGYLLMILMFFTPFMVVNTVYATYPKTSQ
SYLDIQYTWLMTQILYCFNSFANAAIFLRINRKAKVALKIFLQRCLKTRL
EHAQKRNVYHLGMTTLRREKSISFDLNNNNSSFCRTESTKC
Run BLAST on NCBI

transcript from alignment at sc0000257:256211..258418+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017042 ID=TCONS_00017042|Name=TCONS_00017042|organism=Clytia hemisphaerica|type=transcript|length=2208bp|location=Sequence derived from alignment at sc0000257:256211..258418+ (Clytia hemisphaerica)
acAGAGTGAAGAAGTAAAAGAACAAGATCGCAATTATCCATAATGCTATT
GTTCAACCCAGAATGCAAGACGTCTCTTTTCCCGCCACGTGACTATCAAA
ACATCAAAGACATTTTCCTTCTGACTTTCAACTGCGTGgtagccattttg
aatttcacgTTAAATTCGCTCGTCATTTTCATGATTATCAAGACCAGACA
ATACCACAACAAATCTGTCCTTCTGGTCCTCATTTTATCATGCTCTGACG
TCATCACTGCGCTTGTCAGTCAACCGCTCATCGTCTACATGTTATACGTC
AAATCCTTTTACACCATTTCTTGCAATTTATCGATAACGCTACAGTTCAT
GTTCTTTTTTTCGCCTTATTTCTCCGTTTTTACGATCGCTTTCATTGTTT
ACGACCGATATTTACGAATCACTTATCTCAACAAATACGACAAATATATG
ACGAAATACCGATTCATGTTTGGTGTTTTCTTAGTTTTATGTGCTACCAT
GTTTCAAAACATCATCGTTGTCATAGCAACATTGAAAGAATCAACAGAAT
TAGGTGGTTGGGCTGTATTACCTTTAAACGTTTTAACGCTGCTATTCGAA
TTCACCGCATACACCAAAACCATTTATAAGTTACGACAGTACAAGAAAGA
ATgcaagaaaaagaattttcatacGGTAGCCGAGAATTCATTCACACGTT
TAGCTGCAGGCTACCTTCTTATGATTCTGATGTTTTTCACACCTTTTATG
GTTGTGAATACTGTGTATGCTACATATCCAAAAACCAGCCAATCATATCT
CGATATTCAGTACACGTGGTTGATGACGCAAATCCTCTATTGTTTTAACT
CTTTCGCAAATGCCGCCATCTTTCTTCGTATAAACCGGAAAGCGAAAGTG
GCGTTGAAAATTTTCTTGCAGagatgtttgaaaacgaggctggagCATGC
GCAGAAGAGGAATgtctatcatttaggaatgaCAACATTGAGAAGAGAGA
AAAGTATCTCTTTTGATTTGAATAACAACAATTCGTCTNGGAATGACAAC
ATTGAGAAGAGAGAAAAGTATCTCTTTTGATTTGAATAATAACAATTCGT
CTTTTTGTCGCACTGAATCTACAAAATGTTAATGATGAGCAGAATATAGT
TCAACCCTTTCGGCAAAACTTAAAGTGCTTCAAATGTAAAACAATGATTT
TCGAAGTGTGTTCCGGATGGaaaaatgggctgttccattaaaaatttatt
tttatacttttaaGTGACGGTGGACGAACTGTCTTTTACCTCCTGGAAAA
GTTATTCCTAGAATAactatttaccccctggaaaatgaaaaaaacagccc
tttagaccccctggaaattcttctcaggttaccccctggaaatgttcatc
caccccctgtatggatataaaacggaatGGCCCAATCTTTCGAGGCTTTC
CTTTAACATGGACATTTGTCTTTCTAaatatgaaacttttttttctgggc
aatcaaaacttttcccctaactttttcagttttcaacGCAATAAGTGAAG
AAAATTCAGGGTTCGTTGGCGAGTTGGGATTTTCTGACCTTATCGTAGCA
GGTACCTATGATCGTAGTGTGGGTAGTTGTGTGGACCTTTTACAGATATG
ATCGGGAGTCAAATTTTAGGaagcaaaaattgaaattaacaCGAGTTTCT
ATTGCTAGAAGGAGTACATACACTTACACAGGCAAGAGTAAGAAATATGA
AAAGGAAATCAACCGAATAGTCCTGTGATGTTCTCCTTTCTCATCCGAAA
GGCGTTTAGAATTCTTTTAACAGCAAAGTGcatttctttatattttcata
ttatcttcttcaaaatttaatatttaCATCCAAAATTTTATGTGACAATA
ATAATAAATGtattatttttaaagaattgtttatgtacatttttaaaaga
aaactaaaacggtataaattaaatcaaaatgcTTACAAAATTGATGACAA
ACCCACCCTGTTTGAAAGAAAATGGAGTAACGCAGAATTTAACTTTTTCC
ACGGAATTAGTTTCAATTATTTGCAGAAAATTTGTTGACGCCTGATCGGA
AAAACCTTAAGCATCACAATCAAAGTTGTTATGCTGCTGAATgcaccttt
tcgaccatagcCTCCAATTGCCGCGCCGTCATTTATTTGTCCGCTTTTTC
CTAGTTTG

Coding sequence (CDS) from alignment at sc0000257:256211..258418+

>TCONS_00017042 ID=TCONS_00017042|Name=TCONS_00017042|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at sc0000257:256211..258418+ (Clytia hemisphaerica)
ATGCTATTGTTCAACCCAGAATGCAAGACGTCTCTTTTCCCGCCACGTGA
CTATCAAAACATCAAAGACATTTTCCTTCTGACTTTCAACTGCGTGgtag
ccattttgaatttcacgTTAAATTCGCTCGTCATTTTCATGATTATCAAG
ACCAGACAATACCACAACAAATCTGTCCTTCTGGTCCTCATTTTATCATG
CTCTGACGTCATCACTGCGCTTGTCAGTCAACCGCTCATCGTCTACATGT
TATACGTCAAATCCTTTTACACCATTTCTTGCAATTTATCGATAACGCTA
CAGTTCATGTTCTTTTTTTCGCCTTATTTCTCCGTTTTTACGATCGCTTT
CATTGTTTACGACCGATATTTACGAATCACTTATCTCAACAAATACGACA
AATATATGACGAAATACCGATTCATGTTTGGTGTTTTCTTAGTTTTATGT
GCTACCATGTTTCAAAACATCATCGTTGTCATAGCAACATTGAAAGAATC
AACAGAATTAGGTGGTTGGGCTGTATTACCTTTAAACGTTTTAACGCTGC
TATTCGAATTCACCGCATACACCAAAACCATTTATAAGTTACGACAGTAC
AAGAAAGAATgcaagaaaaagaattttcatacGGTAGCCGAGAATTCATT
CACACGTTTAGCTGCAGGCTACCTTCTTATGATTCTGATGTTTTTCACAC
CTTTTATGGTTGTGAATACTGTGTATGCTACATATCCAAAAACCAGCCAA
TCATATCTCGATATTCAGTACACGTGGTTGATGACGCAAATCCTCTATTG
TTTTAACTCTTTCGCAAATGCCGCCATCTTTCTTCGTATAAACCGGAAAG
CGAAAGTGGCGTTGAAAATTTTCTTGCAGagatgtttgaaaacgaggctg
gagCATGCGCAGAAGAGGAATgtctatcatttaggaatgaCAACATTGAG
AAGAGAGAAAAGTATCTCTTTTGATTTGAATAATAACAATTCGTCTTTTT
GTCGCACTGAATCTACAAAATGTTAAATGCTATTGTTCAACCCAGAATGC
AAGACGTCTCTTTTCCCGCCACGTGACTATCAAAACATCAAAGACATTTT
CCTTCTGACTTTCAACTGCGTGgtagccattttgaatttcacgTTAAATT
CGCTCGTCATTTTCATGATTATCAAGACCAGACAATACCACAACAAATCT
GTCCTTCTGGTCCTCATTTTATCATGCTCTGACGTCATCACTGCGCTTGT
CAGTCAACCGCTCATCGTCTACATGTTATACGTCAAATCCTTTTACACCA
TTTCTTGCAATTTATCGATAACGCTACAGTTCATGTTCTTTTTTTCGCCT
TATTTCTCCGTTTTTACGATCGCTTTCATTGTTTACGACCGATATTTACG
AATCACTTATCTCAACAAATACGACAAATATATGACGAAATACCGATTCA
TGTTTGGTGTTTTCTTAGTTTTATGTGCTACCATGTTTCAAAACATCATC
GTTGTCATAGCAACATTGAAAGAATCAACAGAATTAGGTGGTTGGGCTGT
ATTACCTTTAAACGTTTTAACGCTGCTATTCGAATTCACCGCATACACCA
AAACCATTTATAAGTTACGACAGTACAAGAAAGAATgcaagaaaaagaat
tttcatacGGTAGCCGAGAATTCATTCACACGTTTAGCTGCAGGCTACCT
TCTTATGATTCTGATGTTTTTCACACCTTTTATGGTTGTGAATACTGTGT
ATGCTACATATCCAAAAACCAGCCAATCATATCTCGATATTCAGTACACG
TGGTTGATGACGCAAATCCTCTATTGTTTTAACTCTTTCGCAAATGCCGC
CATCTTTCTTCGTATAAACCGGAAAGCGAAAGTGGCGTTGAAAATTTTCT
TGCAGagatgtttgaaaacgaggctggagCATGCGCAGAAGAGGAATgtc
tatcatttaggaatgaCAACATTGAGAAGAGAGAAAAGTATCTCTTTTGA
TTTGAATAATAACAATTCGTCTTTTTGTCGCACTGAATCTACAAAATGTT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009531XLOC_009531Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017042-proteinTCONS_00017042-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017042-exon-sc0000257-1491911889:256211..257196TCONS_00017042-exon-sc0000257-1491911889:256211..257196Clytia hemisphaericaexon
TCONS_00017042-exon-sc0000257-1510915933:256211..257196TCONS_00017042-exon-sc0000257-1510915933:256211..257196Clytia hemisphaericaexon
TCONS_00017042-exon-sc0000257-1575043694:256211..257196TCONS_00017042-exon-sc0000257-1575043694:256211..257196Clytia hemisphaericaexon
TCONS_00017042-exon-sc0000257-1491911889:257261..258418TCONS_00017042-exon-sc0000257-1491911889:257261..258418Clytia hemisphaericaexon
TCONS_00017042-exon-sc0000257-1510915933:257261..258418TCONS_00017042-exon-sc0000257-1510915933:257261..258418Clytia hemisphaericaexon
TCONS_00017042-exon-sc0000257-1575043694:257261..258418TCONS_00017042-exon-sc0000257-1575043694:257261..258418Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:256211..258418 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0308589	0	0	0	0	0	0	0	0	0	0.39115	1.77482	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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