TCONS_00017033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017033
Unique NameTCONS_00017033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5169

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017033 ID=TCONS_00017033|Name=TCONS_00017033|organism=Clytia hemisphaerica|type=transcript|length=5169bp
GGTTAAACAAGTTGTACCACTTTTTTAGatggaaaaaactttttctgttt
ttttgcagGGTGATGACAGCAGGGCTATTACGGATTAATCACCCCGCTCC
TCCCTTACATTTCTAAGCTAAATGTAGTCAGCCATATAATTAGGACTATA
CTCAATTTGCCAAAAATTTGACTTGGGACACTCTTTTTCTGATGAGACAA
AATTGAAACTTTATTCTTTTGATCCAGTTACCTGATTTacttgtatttta
cagacaagAATCTTGAGTTTTGTTTTAAGCTTAACATCAGAAATTGGAAA
TTGGAAAGTTTTATgaacttttacttttttagtCTCATTTTTTACTATTG
TTGCCATTTCCTcctaggtaggtccattcagcatgtagttTGTTGCCTTT
AGTGGAAATCAGGGCTCTTCTGGGGGAATGCTATATTTTGCtctcaaaac
ttaaaaattgtgcCAAATTGTCATAGTTTGGAAGGGGGTCActactttca
aaatttgatggaaCCCCTCTCAAAATGGGGGCGTCATCAGGATTTTTTCC
CCACTTTCAAGACATTACGCACCACTCAGATTAACTAAAAAGATAGCATA
TTCACTCTTGAAAAGAGGTTTTTTTGAGTCTATTCCCAGAATTCCTTGTG
AAAATTggttaaaatttttaggatttcaACCCAGTCCAAGACTTATATAA
AGGGGGGTACAAGCTATGATGATCTTACAATgaattaaattttcataaaa
aatactaACACTTCGAATTTTCCAACTTTCCATCTTGACAATCTACTGTT
TTCATCAGTCCCACCAATCAGAATCCAGCTGGTTTGTTTTGGCCATGTGA
TTCTTCggtaaaaacaatgaaaaaaaattatgNCAGCTTGTTTGTTTTGG
CCATGTGATTCTTCagtaaaaacaatgaaaaaaattatgtttttttttat
tcagctCGAAGTCGCTCTAATGGCTCAAGGCTAGAAACTGGACTTGTACC
AAGAAGACGAAGTAGACGCTTGAAGAAGAGAAATGTAACATTCAAGAAGC
AAGTGATGATGTCAGCAGATATACCATACAAATGCTCTGCTGCTCGAAGT
CTTTTTGTTGTCAGATCATTGTCAGATTTACCAAATGAACTTTCCATTAA
AATACTTGAGTATTTCAATGCAAAGGAATTGATTTCATTGAGATTGGTAA
ACAACCATTTTAAAAACCTTATTGATGGTACCCCAAGTATTTGGTCAAGA
GTTAGCTACCAAAACATGTGGCCATCAACGCAAAAAGACTACTCCCTTTT
CAGAAGGGGTTCAAATCATGGAAATGTTGAAAGTCTAACAAAACTTGGCT
TGTCTCATCTCTACCATTATAACTTAACAGTTGGggaagaaaaaaacaag
aaagacgTTCAAGAACACTCAATCAAAGCTGCAAACTACTTGCACAATCT
GGATCTCAATATCCATCCCAATAAACCGTTAACTTGGATGTTAATTCGGC
CACCATGGTCTATGTCTAAAAGTATCTGCCTGAAACACTTGGTGCATACG
CAAATGTTAACTCTCAAGGAATCCAAAATGAATGGACCATTGTGTTATAA
CATTGGACGTATCTTCAACTTGGAATCagacaacaacagcaacaaagaaa
aatcaactgAAAACTTCCTACAATCTTGTGATCTTCGCTGCTCACATGCA
AAGTTTGAGCTTCTGTTGGCAAGGAAAAATGAGATTTCAGCTGATGCTGG
AAAGACCTTACAGTGGGTTCGAGAATTGAGAGAATGTGCTATGACAGGGA
ATAAGGAAGCAATTTTTGAACTTGTTGGTTTTGCTTTATCAAACAATTCA
CTTTTTATTGAGGACATGTTGAATATGAACAAACTCTCGAAAAACTTATT
TTCCAATTGTCAATGTGTTCGTGTTGACAAACTTGAACTTTACCAACCTA
AAATAAATAGCTTAATGAGATGTATCTTAGTAGATTGGCTAGCAGAAGTT
GCTTATATGAAAGACATGTCACATGAGGTGTTACATGCAGCTGTTAGCTA
TGTTGATCGTTACTTGATGTCTCGAGTGGTTGAAAGAACCAAATTGCAAT
TGTTAGGAATCTCATGTTTGTTGCTGGCGGCAAAaTCACATTATGATGCA
AGACAAGTACACATTTTGACGGTCAGAGAATCATCATGGTTGACTGATCA
AACCTACCAATATGAAGACGTTGTCAaGATGATGGGAGAGATTATTGGAG
CATTTGCCGGTGATCTATGGAAACCTACTTCTTGGAATTACCTGCATACC
ATTCTTGCTTTACCAATGATTGACGATACATGGAAATCTTGTTGTCATTA
TGTTCATGATTTAACGCTGCAATTCACTTTGTTTGGAAGCTACAAACCGT
CTGTTGTTGCTTGTTCATCTTTATTCTTAGCTGGTCTCATCTTGGACAGA
GATAACTCTTGGCCATCAGAACTGGAagaagttactggatttcacgTCAA
AGATATTGCTAACTGTGCATCCCTTATCCACTATAAaagcTTCACCTGCT
CCTCAATGAAGGATGACCGTGGTCTGCCACTTGAAAGCATCAAAGCTCGA
TACAGGAGTCAACGAATGCATTGCATTGCTTCCCTTCCTTTACAAGATGA
GAACACGTTGAAAAGCCGCATATTATCCACTGACAGCACATTATCATGTG
CATCGCAAGAACCACTGCAATTTGTCGTGTTGTCTAATGACGTTGATGAA
ACGTTAAACACGAGCATCAAAAGTGTTGATTATGATGGAGACAGTGAATG
CGAAGTTGATTCtgaaagtgattttgatgagagTTTTTGTGTTGGACGCA
GTCGGTTATCATCTTACCATTCAGTAGAAGAATTCTCAGACGACGAAACC
ACCATGGATGCTAGCAGTTTCAATTTCCGTGATCCTGATAACAGTTTACC
ACCTAAAGAGAGCTTCACGCCAATCTTTAATAAATCGCATAACTCCTCTG
CAACCAAAAGGAACTCTTTCTTTGATGGCGtggaaaatcatgaaaataag
GTCACCGGTTTTCACGGGCAATATTTGGAACCCTTGAAATATGCAGGTGC
GCAAGGTTCACATGATAAAGACTCGCCCAACAAGCTCGATGCTGCTTGTG
GTACGACAAAACCGTCCACAAGTCGCCACCAAAGCCCTAAATACCAACCA
TATCAACCATGTTCTAGCCGCTATGATCATGTCGGAAGGCGGACTCGTTC
AAGTTGTACACGCAGGTGagagaatttcaattttttgcttaGTGTACTTT
TtagtttccttttttttaaattcaactgTAGATATGTAAATAGACCTATT
CACAATTGAGAAGTTATTTTTATCTCTAGGGAAATGACTGACTATCTTAT
CCATCTTTTGAGCGTGAATATTTTCActaaattcttgaaaatgttattCA
CAATCTCTGTAGTACAAGTAGAAAGCTGTTGCAATGGTATCTTAGAGAAG
TGGGCTTGTCGCCGTGTTTGGGGCGCTATCTTCTTGGGTGATTTTAAAGA
TTGCAGATTTTACCTTTATTAAAAATGCGTCTTAAAAGTGGATTCATAAT
GCGAAAAGTGTATATTTTAGTCACCAAATATGTCATGTGGGATGTTAGag
taaaaattatatatatccTTACtatttcttaacattttctagAAGCTTTT
TCGGCTAtattctttattattattatagatatttaaaaattgaaatttac
aaaACATACAATATTTAGTTATGAAAGTACAAAAAAAATGCAACAACATT
AAAAAGGCGGTCCTGTAATCGCCTTTTTAATCATTTGTAAAAAGTTCTAT
GACAAttgtatcaaaattttaaacctttttttttggaGTATATACATTCc
tagtaattatcatttttgaaaattaggaccttcatatttttttaaacttt
ttaattcATATTTAAGTGTTTGGGTAATGTCTTTCTCTATATCGAAATGG
GATCGAAATTTCAGGAAACAAATTCAGTTTAGATAGGCTGACTGGTCTAT
GTATTATGTGTCTTTTATTATATGTAAACACCATGCTAATTATTTCTTTG
GAAATTCGATGTCTCTTTCGTTGGTCAAAAATTAAGCTgtccgatttaaa
aaaaaaatcttgtatGACTAGTTATTTGTCACTTTGTATATTTTCTCATA
TAACTACTTAATTGAATAATGAAACAAAAGAACATTTTATTCAATAACAT
TTTcatgtaaaatatttcttatttatttgtttctttctatagatttcCTT
ACGTTATTTGTCTTCGTACTTAATTAGATAGCTTTGTTAGAATTACGAGT
TTATTTCCAAATAAAATGtataccttttcgaccgtagccgctaaTTGCCG
CGCCGGCATTTTTTTTGtctgctttatcccactaaaaccgtcccagtcct
tttttaacacctatagacaatagaaaaatgtgtcaaaaaaggattgggtc
gagtttagggggataattaaatgaTTAAGTGGCACGTGCCTAACCACGCG
gctacgatcgaaaaggtgtacAGATACCTATTTGCGGAAGGTTTATAAAG
ACTTTTACACTCTAAactttgattgcgtgaattttGTAATGTCAGCTTTA
TCTAAGGTTGTACTTTATCTATGTTTGTATTAATAGTTTCTGTTTCCTTA
GCTTACCAGGTAAAGAGTGTCCGGGAAAAGAGGAACATAATTTTCAGTGT
GTGTTTTATTTGgtctttttaattattttagtgttttttttatCACTGAT
CCTTTACCTTCTTCCTTTCAGAGACACTTTATTTGTTTCTATATTTCACT
TattccattttgtttttgttttttttatctagGTATTGTTCCCATTGTCT
AGGTAGAGTGTATATACAGGACCTCTCGTTAATTTTATtggttatttttc
tttaattttttttttacgatTCGTAGTGATTCATATTATTATACTCTTTG
CTTTTATCTCTCTAAGAATTTGTTATTATCAAAAATGTAGCATACATAAT
ATTCTTCATTATTAAGTACATGTTAATTTTATTTCCTCAATTTTTAACAC
CCTATACCGTTTTTAAGTTAATGATAATGTTtacaaaagatatttttaaa
agaaaactttgaaCGTTTT
Run BLAST on NCBI

transcript from alignment at sc0000257:174905..187598+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017033 ID=TCONS_00017033|Name=TCONS_00017033|organism=Clytia hemisphaerica|type=transcript|length=12694bp|location=Sequence derived from alignment at sc0000257:174905..187598+ (Clytia hemisphaerica)
GGTTAAACAAGTTGTACCACTTTTTTAGatggaaaaaactttttctgttt
ttttgcagGGTGATGACAGCAGGGCTATTACGGATTAATCACCCCGCTCC
TCCCTTACATTTCTAAGCTAAATGTAGTCAGCCATATAATTAGGACTATA
CTCAATTTGCCAAAAATTTGACTTGGGACACTCTTTTTCTGATGAGACAA
AATTGAAACTTTATTCTTTTGATCCAGTTACCTGATTTacttgtatttta
cagacaagAATCTTGAGTTTTGTTTTAAGCTTAACATCAGAAATTGGAAA
TTGGAAAGTTTTATgaacttttacttttttagtCTCATTTTTTACTATTG
TTGCCATTTCCTcctaggtaggtccattcagcatgtagttTGTTGCCTTT
AGTGGAAATCAGGGCTCTTCTGGGGGAATGCTATATTTTGCtctcaaaac
ttaaaaattgtgcCAAATTGTCATAGTTTGGAAGGGGGTCActactttca
aaatttgatggaaCCCCTCTCAAAATGGGGGCGTCATCAGGATTTTTTCC
CCACTTTCAAGACATTACGCACCACTCAGATTAACTAAAAAGATAGCATA
TTCACTCTTGAAAAGAGGTTTTTTTGAGTCTATTCCCAGAATTCCTTGTG
AAAATTggttaaaatttttaggatttcaACCCAGTCCAAGACTTATATAA
AGGGGGGTACAAGCTATGATGATCTTACAATgaattaaattttcataaaa
aatactaACACTTCGAATTTTCCAACTTTCCATCTTGACAATCTACTGTT
TTCATCAGTCCCACCAATCAGAATCCAGCTGGTTTGTTTTGGCCATGTGA
TTCTTCggtaaaaacaatgaaaaaaaattatgNCAGCTTGTTTGTTTTGG
CCATGTGATTCTTCagtaaaaacaatgaaaaaaattatgtttttttttat
tcagctCGAAGTCGCTCTAATGGCTCAAGGCTAGAAACTGGACTTGTACC
AAGAAGACGAAGTAGACGCTTGAAGAAGAGAAATGTAACATTCAAGAAGC
AAGTGATGATGTCAGCAGATATACCATACAAATGCTCTGCTGCTCGAAGT
CTTTTTGTTGTCAGATCATTGTCAGATTTACCAAATGAACTTTCCATTAA
AATACTTGAGTATTTCAATGCAAAGGAATTGATTTCATTGAGATTGGTAA
GAATAACAGTATAATCACTTGTTTGTGTTAAAGTATGTGGATACCTTCAT
TTTGAATTATTAtccaaaaaatttttaacatgtATCAACATTTCTCCAAC
CTAGTACAAAATTTatgaattaatttaaaatctaaTTATTTGAAAAGATT
GGTATCTCttctgtgaaaatttaaaagtagTTTTGGATTTTTAATTCACT
ATGCCCTATGCTTCATACATAGGATAATGGAAAACCTACATTTTTACAGG
CCACAAACCattttaaatgctttaaaatgcCCATGACTTACTGTAAAACT
GCAGCATGATAATTTCAAGCTCAAAATTCTCCAAATCCCAACTACAAAAT
GGTATTGTCTCATCGTCACTTTTCAATCCATAGGTAAACAACCATTTTAA
AAACCTTATTGATGGTACCCCAAGTATTTGGTCAAGAGTTAGCTACCAAA
ACATGTGGCCATCAACGCAAAAAGACTACTCCCTTTTCAGAAGGTAATAC
ATTCATTTTTGATCTTCTTCTTGGAATAAAATTGCTGAGCCTACCTGGAg
catattcttttttttcttctgtagTTTAAAACCCACCACAGAACATTTGA
GCTTTATGGTTAATTGCACTTTCATTTTAGGGGTTCAAATCATGGAAATG
TTGAAAGTCTAACAAAACTTGGCTTGTCTCATCTCTACCATTATAACTTA
ACAGGTTGGTTTAcaaatttgatgaaacaaagcacaattttcatttgctc
ttctttttttagaaaacacAATCCTTCCCTTAGCAGCAAAAAAAGAGGAT
ATTAGAGCTTTCTCTGTTTGTTGCTACAAATCCACTTAccacttttttac
ttttaggtataaacttcttaagagcagaaacttttgcgataTACATGAAT
TTTAACCCTTtttgcaaaagtaaatgtctttaaaatttcttgaagGGGTC
ATTCCTGAAAGTTTATGGGCATTATTCAAGGAGGCGCTTATTAACCTAGG
TCACTTTAGTAAAATGAATGGGAACCTCATTTGTAACTTCCCAAGcaatt
taaagtacctgaaaatcagaCCGGTCTTGGTCTTATTACGAGCGGTCTAG
TAGCGGCCAAGTCTTTGTTTAGATCGGCCTCCAGACTTTCTAGAAACGTG
ATCTCTAACAGTCCTGGTCGCTTCTAGATGCTTGTGGCCGCTTATTAGAC
TGGTCTAGGTTGCTTGTTAGACGGGTCCGGGCTGTTTGTTAAATCGCTCC
AAGCCGCTGGTTAGTGATTTTTAGTAACAATTAcatcaaaaaattgtaaa
aggATGTCAACCGATCGCCCGGTCTCAGACCAGACGCTTTGCAGCAACAG
CTAAATTAACTAGACTCGTAGCAGCCTTTTGGTTAGCAGCCTTTTGGTAA
ACTTTTTACTTTCCATTTCTTGCTTTGATAAATAGTTGGggaagaaaaaa
acaagaaagacgTTCNCATTTCTTGCTTTAATAAATAGTTGGggaagaaa
aaaacaagaaagacgTTCAAGAACACTCAATCAAAGCTGCAAACTACTTG
CACAATCTGGATCTCAATATCCATCCCAATAAACCGTTAACTTGGATGTT
AATTCGGCCACCATGGTCTATGTCTAAAAGTATCTGCCTGAAACACTTGG
TGCATACGCAAATGTTAACTCTCAAGGTATGCTTTAGAATTTAATATTCC
TTGCTTTTCTTTGATGATTTGCATCAGCCTAACTTTCCCTTgtaatgtct
tatttttttggatAAATTAATGTATTGACTGTACAACggtgctgcaaata
aggaaaaGGAAATTTTTCAGTTGGCGGGTAATTTCCTTAATTTCAGATTG
GCTAAAGACCTATTTTAATTTAAAGTTtgtcttttatttgaaagcGGTAT
GAAGTATCTAGTTGGGCTGAATAGAAATGTAATTAGCatgattaaaaata
ataaaagaactTTAATAAGCCTATAACTTATAATATTAACCTGACTGGTA
ATTACCagtcaccggccgttatttgcgGCACTTTAATGACTTGCGATTTA
AAACTGAACTTTgagaaaaatagattttatttaatTCTTCTTCCCTGTAG
GAATCCAAAATGAATGGACCATTGTGTTATAACATTGGACGTATCTTCAA
CTTGGAATCagacaacaacagcaacaaagaaaaatcaactgAAAACTTCC
TACAATCTTGTGATCTTCGCTGCTCACATGCAAAGTTTGAGCTTCTGTTG
GCAAGGAAAAATGAGATTTCAGCTGATGCTGGAAAGACCTTACAGTGGGT
TCGAGAATTGAGAGAATGTGCTATGACAGGGAATAAGGAAGCAATTTTTG
AACTTGTTGGTTTTGCTTTATCAAACAATTCACTTTTTATTGAGGACATG
TTGAATATGAACAAACTCTCGAAAAACTTATTTTCCAATTGTCAATGTGT
TCGTGTTGACAAACTTGAACTTTACCAACCTAAAATAAATAGCTTAATGA
GATGTATCTTAGTAGATTGGCTAGCAGAAGTTGCTTATATGAAAGACATG
TCACATGAGGTGTTACATGCAGCTGTTAGCTATGTTGATCGTTACTTGAT
GTCTCGAGTGGTTGAAAGAACCAAATTGCAATTGTTAGGAATCTCATGTT
TGTTGCTGGCGGCAAAGTAAGTTTGGCCTTGGGTCAATATATTCTTAAAT
TGCTTTCTAATGTTTCAATGAATGCATATCTTTGTGATAAGTATCAAAAG
TACATCATTTTGCTGTCAAGTGGAAATGATCCAGATATGAATTTCCCTAT
ACAATGTAGATAAGTGTTAAATAACATTGCTTGATATAAATTTGGATGGC
AAAATGGATTTTGTATTATTTATCTTCAAAACCAAGTATTTCACACATCA
GGGGATCCTTTCGACATGTGCAAAATTCATTTAAGCCTTCGCAATGCAAT
AATGAATTCTTTTCAATTGAAATATATCCTTTTCATATCACATtttcaaa
tactttttaaaatgtttagaTCACATTATGATGCAAGACAAGTACACATT
TTGACGGTCAGAGAATCATCATGGTTGACTGATCAAACCTACCAATATGA
AGACGTTGTCAagtatataaatattttttcatgagcTTGTGTTAGACATA
CATTTTTAATCTTTATGTCAACTTGAGTCTAAAACGATTGCTTTGTGCAT
AGGATTTGAATCTAGCTTAATTTCAGAAAGAATTTTCGATTTATGTTTTG
TATGTATGATTTCATTCACCTNCATTTCTTGCTTTAATAAATAGTTGGgg
aagaaaaaaacaagaaagacgTTCAAGAACACTCAATCAAAGCTGCAAAC
TACTTGCACAATCTGGATCTCAATATCCATCCCAATAAACCGCTAACTTG
GATGTTAATTCGGCCACCATGGTCTATGTCTAAAAGTATCTGCCTGAAAC
ACTTGGTGCATACGCAAATGTTAACTCTCAAGGTATGCTTTAGAATTTAA
TATTCCTTGCTTTTCTTTGATGATTTGCATCAGCCTAACTTTCCCTTgta
atgtcttatttttttggatAAATTAATGTATTGACTGTAcaacagtgctg
caaataaggaaaaGGAAATTTTTCAGTTGGCGGGTAATTTCCTTAATTTC
AGATTGGCTAAAGACCTATTTTAATTTAAAGTTtgtcttttatttgaaag
cGGTATGAAGTATCTAGTTGGGCTGAATAGAAATGTAATTAGCatgatta
aaaataataaaagaactTTAATAAGCCTATAACTTATAATATTAACCTGA
CTGGTAATTACCagtcaccggccgttatttgcgGCACTTTAATGACTTGC
GATTTAAAACTGAACTTTgagaaaaatagattttatttaatTCTTCTTCC
CTGTAGGAATCCAAAATGAATGGACCATTGTGTTATAACATTGGACGTAT
CTTCAACTTGGAATCagacaacaacagcaacaaagaaaaatcaactgAAA
ACTTCCTACAATCTTGTGATCTTCGCTGCTCACATGCAAAGTTTGAGCTT
CTGTTGGCAAGGAAAAATGAGATTTCAGCTGATGCTGGAAAGACCTTACA
GTGGGTTCGAGAATTGAGAGAATGTGCTATGACAGGGAATAAGGAAGCAA
TTTTTGAACTTGTTGGTTTTGCTTTATCAAACAATTCACTTTTTATTGAG
GACATGTTGAATATGAACAAACTCTCGAAAAACTTATTTTCCAATTGTCA
ATGTGTTCGTGTTGACAAACTTGAACTTTACCAACCTAAAATAAATAGCT
TAATGAGATGTATCTTAGTAGATTGGCTAGCAGAAGTTGCTTATATGAAA
GACATGTCACATGAGGTGTTACATGCAGCTGTTAGCTATGTTGATCGTTA
CTTGATGTCTCGAGTGGTTGAAAGAACCAAATTGCAATTGTTAGGAATCT
CATGTTTGTTGCTGGCGGCAAAGTAAGTTTGGCCTTGGGTCAATATATTC
TTAAATTGCTTTCTAATGTTTCAATGAATGCATATCTTTGTGATAAGTAT
CAAAAGTACATCATTTTGCTGTCAAGTGGAAATGATCCAGATATGAATTT
CCCTATACAATGTAGATAAGTGTTAAATAACATTGCTTGATATAAATTTG
GATGGCAAAATGGATTTTGTATTATTTATCTTCAAAACCAAGTATTTCAC
ACATCAGGGGATCCTTTCGACATGTGCAAAATTCATTTAAGCCTTCGCAA
TGCAATAATGAATTCTTTTCAATTGAAATATATCCTTTTCATATCACATt
ttcaaatactttttaaaatgtttagaTCACATTATGATGCAAGACAAGTA
CACATTTTGACGGTCAGAGAATCATCATGGTTGACTGATCAAACCTACCA
ATATGAAGACGTTGTCAagtatataaatattttttcatgagcTTGTGTTA
GACATACATTTTTAATCTTTATGTCAACTTGAGTCTAAAACGATTGCTTT
GTGCATAGGATTTGAATCTAGCTTAATTTCAGAAAGAATTTTCGATTTAT
GTTTTGTATGTATGATTTCATTCACCTTAAAAGGTTGGATTTCGTGATGA
CAatgtaaatttctttttcttgataTTATTATCCATTTTTCAGGATGATG
GGAGAGATTATTGGAGCATTTGCCGGTGATCTATGGAAACCTACTTCTTG
GAATTACCTGCATACCATTCTTGCTTTACCAATGGTACAAATTGTTTGCA
TTTTGAAACCTTAGCCAACGACCACCATAACGACTATAAGCTGATatcat
taaaaataatcagTGAGCTTTATAAGCTCTGGACAAAGCTGTCAACCATC
TTTGATCAGATCGGGCTACACAGGCCTACTCTGCAGAGTTGCCCGTTgtt
aggaaattaatttttgatctctttttgcttttttttttttgattttttcg
ctatCTTTTTCTGCAATGcgtaaaaaattaattgaagCTGAAGGAACCGG
TTAAGAAATACAGTATTGACTGTTTTTTTCAGGCTGTACTATTATATATT
GCCCttggtcaacgcaacaaccttgcaagctcggtcgttacttgacctcg
ggcaatatttttcagtacagccctcacaaaccggtcattattgNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGCCGTTATT
TGCGGCACTTTAATGACTTGCGATTTAAAACTGAACTTTgagaaaaatag
attttatttaatTCTTCTTCCCTGTAGGAATCCAAAATGAATGGACCATT
GTGTTATAACATTGGACGTATCTTCAACTTGGAATCagacaacaacagca
acaaagaaaaatcaactgAAAACTTCCTACAATCTTGTGATCTTCGCTGC
TCACATGCAAAGTTTGAGCTTCTGTTGGCAAGGAAAAATGAGATTTCAGC
TGATGCTGGAAAGACCTTACAGTGGGTTCGAGAATTGAGAGAATGTGCTA
TGACAGGGAATAAGgaaacaatttttgaacttgTTGGTTTTGCTTTATCA
AACAATTCACTTTTTATTGAGGACATGTTGAATATGAACAAACTCTCGAA
AAACTTATTTTCCAATTGTCAATGTGTTCGTGTTGACAAACTTGAACTTT
ACCAACCTAAAATAAATAGCTTAATGAGATGTATCTTAGTAGATTGGCTA
GCAGAAGTTGCTTATATGAAAGACATGTCACATGAGGTGTTACATGCAGC
TGTTAGCTATGTTGATCGTTACTTGATGTCTCGAGTGGTTGAAAGAACCA
AATTGCAATTGTTAGGAATCTCATGTTTGTTGCTGGCGGCAAAGTAAGTT
TGGCCTTGGGTCAATATATTCTTAAATTGCTTTCTAATGGTTTAATGAAT
GCATATCTTTGTGATAAGTATCAAAAGTACATCATTTTGCAGTCAAGTGG
AAATTACCAGATATGAAGTTCCCTATACCATGTAGATAAGTGTTGAATAA
CATTGCTAGATATAAGTTTGGATGGCAAAATGGATTTCATATTATTTATC
TTCAAAACCAAGTATTTCACACATCAGAGAATCCTTTCGACATGTGCAAA
ATTCGTTTAAGCCTTCGCAATGCAATAATAATGAATTCTTTTCAATTGAA
ATACATCCTTTTCATATCACATtttcaaatactttttaaaatgtttagaT
CACATTATGATGCAAGACAAGTACACATTTTGACGGTCAGAGAATCATCA
TGGTTGACTGATCAAACCTACCAATATGAAGACGTTGTCAagtatataaa
tattttttcatgagcTTGTGTTAGACATACATTTTTAATCTTTATGTCAA
CTTGAGTCTAAAACGATTGCTTTGTGCATAGGATTTGAATCTAGCTTAAT
TTCAGAAAGAATTTTCGATTTATGTTTTGTATGTATGATTTCATTCACCT
TAAAAGGTTGGATTTCGTGATGACAatgtaaatttctttttcttgataTT
ATTATCCATTTTTCAGGATGATGGGAGAGATTATTGGAGCATTTGCCGGT
GATCTATGGAAACCTACTTCTTGGAATTACCTGCATACCATTCTTGCTTT
ACCAATGGTACAAATTGTTTGCATTTTGAAACCTTAGCCAACGACCACCA
TAACGACTATAAGCTGATatcattaaaaataatcagTGAGCTTTATAAGC
TCTGGACAAAGCTGTCAACCATCTTTGATCAGATCGGGCTACACAGGCCT
ACTCTGCAGAGTTGCCCGTTgttaggaaattaatttttgatctctttttg
cttttttttttttgattttttcgctatCTTTTTCTGCAATGcgtaaaaaa
ttaattgaagCTGAAGGAACCGGTTAAGAAATACAGTATTGACTGTTTTT
TTCAGGCTGTACTATTATATATTGCCCttggtcaacgcaacaaccttgca
agctcggtcgttacttgacctcgggcaatatttttcagtacagccctcac
aaaccggtcattattgcattagagtagtgctaccatttaggtaccacttt
caaaaaactctgatcaaaggTTTGGTTGGCCAAGACAGAGAGACTGCCTC
AAGAGCCTTTGTAAAGCTCAGTTAAGATAATATGTATTATgtgcaaataa
aaaataataatccaGGCTTCACATTGATTCTTGTCAAAGTCAACTTTTGT
AACTCAAAGTGCAAGAACACAACCGGATTTGTGGGGGATGTACTATTGAA
TTttactttgatttcttttgttcaCGTTTTAGATTGACGATACATGGAAA
TCTTGTTGTCATTATGTTCATGATTTAACGCTGCAATTCACTTTGTTTGG
AAGGTAATTTTAAATCTTGATTTTCTTAGGGAATCTGCTACGTTAATTTC
AATATATAAATTAGGTTTTAAAGATTACATTTAATTTTCACGAGATTCAA
TTTTCTGATATATATTTTTGTGAATGAAGAAAAAATCAGAGAAGTTGAAA
TGGTTCTGAAAgcgaaaacctgaaaattaatCCCATGAAAATTAATCCCG
CGAATGTTAATCTGATTACagtagaaaataaaaaaccaGAGTAAATGTTC
AGAAGTTGAAGCTAATGATCAAAAGCCAGGCATTTCGTATGTAAGAATCC
TAATGGTAATAAAGGCActctcaaaaatgtttttcttcttccAGCTACAA
ACCGTCTGTTGTTGCTTGTTCATCTTTATTCTTAGCTGGTCTCATCTTGG
ACAGAGGTATGgtttttctattcattttctcaattttcgtGCATTAAAGC
GTGTGTTTATAAAAAACCACCACATAAAAACAGTTGTTACATGATGTCTG
TCTGATCTGTTACCATTCTTTTTTCTCTGATTTGCTttagtttgttttga
tctgatttcagttgttttgttttcagaaaaatcgaTTGAAAGAAGCCGAC
AGCATTTTTTTTACCCAGTCTGAAAGTAATGATTTTTATCCAAGTTAGAT
AAAGAACTAAAAGAAAAGACCACAGCCAGTCCTGACTATAGTATACAAAC
CGATTATGTGTTATTATACATTTTTTCACTCTCTCACTCTCTCTCACTCT
CTCGTAGATAACTCTTGGCCATCAGAACTGGAagaagttactggatttca
cgTCAAAGATATTGCTAACTGTGCATCCCTTATCCACTATAAaaggtgaa
aaagaaaattcgttTCTCCTTGAATTTGGAGCAAAAGAAATTTGGGGCTA
TTgcacaaaatttgaaatgataaaatgatattttaacaaatcatatttca
acattttttttcagcTTCACCTGCTCCTCAATGAAGGATGACCGTGGTCT
GCCACTTGAAAGCATCAAAGCTCGATACAGGAGTCAACGAATGCATTGCA
TTGCTTCCCTTCCTTTACAAGATGAGAACACGTTGAAAAGCCGCATATTA
TCCACTGACAGCACATTATCATGTGCATCGCAAGAACCACTGCAATTTGT
CGTGTTGTCTAATGACGTTGATGAAACGTTAAACACGAGCATCAAAAGTG
TTGATTATGATGGAGACAGTGAATGCGAAGTTGATTCtgaaagtgatttt
gatgagagTTTTTGTGTTGGACGCAGTCGGTTATCATCTTACCATTCAGT
AGAAGAATTCTCAGACGACGAAACCACCATGGATGCTAGCAGTTTCAATT
TCCGTGATCCTGATAACAGTTTACCACCTAAAGAGAGCTTCACGCCAATC
TTTAATAAATCGCATAACTCCTCTGCAACCAAAAGGAACTCTTTCTTTGA
TGGCGtggaaaatcatgaaaataagGTCACCGGTTTTCACGGGCAATATT
TGGAACCCTTGAAATATGCAGGTGCGCAAGGTTCACATGATAAAGACTCG
CCCAACAAGCTCGATGCTGCTTGTGGTACGACAAAACCGTCCACAAGTCG
CCACCAAAGCCCTAAATACCAACCATATCAACCATGTTCTAGCCGCTATG
ATCATGTCGGAAGGCGGACTCGTTCAAGTTGTACACGCAGGTGagagaat
ttcaattttttgcttaGTGTACTTTTtagtttccttttttttaaattcaa
ctgTAGATATGTAAATAGACCTATTCACAATTGAGAAGTTATTTTTATCT
CTAGGGAAATGACTGACTATCTTATCCATCTTTTGAGCGTGAATATTTTC
ActaaattcttgaaaatgttattCACAATCTCTGTAGTACAAGTAGAAAG
CTGTTGCAATGGTATCTTAGAGAAGTGGGCTTGTCGCCGTGTTTGGGGCG
CTATCTTCTTGGGTGATTTTAAAGATTGCAGATTTTACCTTTATTAAAAA
TGCGTCTTAAAAGTGGATTCATAATGCGAAAAGTGTATATTTTAGTCACC
AAATATGTCATGTGGGATGTTAGagtaaaaattatatatatccTTACtat
ttcttaacattttctagAAGCTTTTTCGGCTAtattctttattattatta
tagatatttaaaaattgaaatttacaaaACATACAATATTTAGTTATGAA
AGTACAAAAAAAATGCAACAACATTAAAAAGGCGGTCCTGTAATCGCCTT
TTTAATCATTTGTAAAAAGTTCTATGACAAttgtatcaaaattttaaacc
tttttttttggaGTATATACATTCctagtaattatcatttttgaaaatta
ggaccttcatatttttttaaactttttaattcATATTTAAGTGTTTGGGT
AATGTCTTTCTCTATATCGAAATGGGATCGAAATTTCAGGAAACAAATTC
AGTTTAGATAGGCTGACTGGTCTATGTATTATGTGTCTTTTATTATATGT
AAACACCATGCTAATTATTTCTTTGGAAATTCGATGTCTCTTTCGTTGGT
CAAAAATTAAGCTgtccgatttaaaaaaaaaatcttgtatGACTAGTTAT
TTGTCACTTTGTATATTTTCTCATATAACTACTTAATTGAATAATGAAAC
AAAAGAACATTTTATTCAATAACATTTTcatgtaaaatatttcttattta
tttgtttctttctatagatttcCTTACGTTATTTGTCTTCGTACTTAATT
AGATAGCTTTGTTAGAATTACGAGTTTATTTCCAAATAAAATGtatacct
tttcgaccgtagccgctaaTTGCCGCGCCGGCATTTTTTTTGtctgcttt
atcccactaaaaccgtcccagtccttttttaacacctatagacaatagaa
aaatgtgtcaaaaaaggattgggtcgagtttagggggataattaaatgaT
TAAGTGGCACGTGCCTAACCACGCGgctacgatcgaaaaggtgtacAGAT
ACCTATTTGCGGAAGGTTTATAAAGACTTTTACACTCTAAactttgattg
cgtgaattttGTAATGTCAGCTTTATCTAAGGTTGTACTTTATCTATGTT
TGTATTAATAGTTTCTGTTTCCTTAGCTTACCAGGTAAAGAGTGTCCGGG
AAAAGAGGAACATAATTTTCAGTGTGTGTTTTATTTGgtctttttaatta
ttttagtgttttttttatCACTGATCCTTTACCTTCTTCCTTTCAGAGAC
ACTTTATTTGTTTCTATATTTCACTTattccattttgtttttgttttttt
tatctagGTATTGTTCCCATTGTCTAGGTAGAGTGTATATACAGGACCTC
TCGTTAATTTTATtggttatttttctttaattttttttttacgatTCGTA
GTGATTCATATTATTATACTCTTTGCTTTTATCTCTCTAAGAATTTGTTA
TTATCAAAAATGTAGCATACATAATATTCTTCATTATTAAGTACATGTTA
ATTTTATTTCCTCAATTTTTAACACCCTATACCGTTTTTAAGTTAATGAT
AATGTTtacaaaagatatttttaaaagaaaactttgaaCGTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009528XLOC_009528Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017033-exon-sc0000257-1491911889:174905..176100TCONS_00017033-exon-sc0000257-1491911889:174905..176100Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1510915933:174905..176100TCONS_00017033-exon-sc0000257-1510915933:174905..176100Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1575043694:174905..176100TCONS_00017033-exon-sc0000257-1575043694:174905..176100Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1491911889:176488..176597TCONS_00017033-exon-sc0000257-1491911889:176488..176597Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1510915933:176488..176597TCONS_00017033-exon-sc0000257-1510915933:176488..176597Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1575043694:176488..176597TCONS_00017033-exon-sc0000257-1575043694:176488..176597Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1491911889:176735..176808TCONS_00017033-exon-sc0000257-1491911889:176735..176808Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1510915933:176735..176808TCONS_00017033-exon-sc0000257-1510915933:176735..176808Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1575043694:176735..176808TCONS_00017033-exon-sc0000257-1575043694:176735..176808Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1491911889:177593..177780TCONS_00017033-exon-sc0000257-1491911889:177593..177780Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1510915933:177593..177780TCONS_00017033-exon-sc0000257-1510915933:177593..177780Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1575043694:177593..177780TCONS_00017033-exon-sc0000257-1575043694:177593..177780Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1491911889:178205..178770TCONS_00017033-exon-sc0000257-1491911889:178205..178770Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1510915933:178205..178770TCONS_00017033-exon-sc0000257-1510915933:178205..178770Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1575043694:178205..178770TCONS_00017033-exon-sc0000257-1575043694:178205..178770Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1491911889:179124..179216TCONS_00017033-exon-sc0000257-1491911889:179124..179216Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1510915933:179124..179216TCONS_00017033-exon-sc0000257-1510915933:179124..179216Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1575043694:179124..179216TCONS_00017033-exon-sc0000257-1575043694:179124..179216Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1491911889:181248..181338TCONS_00017033-exon-sc0000257-1491911889:181248..181338Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1510915933:181248..181338TCONS_00017033-exon-sc0000257-1510915933:181248..181338Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1575043694:181248..181338TCONS_00017033-exon-sc0000257-1575043694:181248..181338Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1491911889:183937..184007TCONS_00017033-exon-sc0000257-1491911889:183937..184007Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1510915933:183937..184007TCONS_00017033-exon-sc0000257-1510915933:183937..184007Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1575043694:183937..184007TCONS_00017033-exon-sc0000257-1575043694:183937..184007Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1491911889:184349..184410TCONS_00017033-exon-sc0000257-1491911889:184349..184410Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1510915933:184349..184410TCONS_00017033-exon-sc0000257-1510915933:184349..184410Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1575043694:184349..184410TCONS_00017033-exon-sc0000257-1575043694:184349..184410Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1491911889:184762..184849TCONS_00017033-exon-sc0000257-1491911889:184762..184849Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1510915933:184762..184849TCONS_00017033-exon-sc0000257-1510915933:184762..184849Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1575043694:184762..184849TCONS_00017033-exon-sc0000257-1575043694:184762..184849Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1491911889:184969..187598TCONS_00017033-exon-sc0000257-1491911889:184969..187598Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1510915933:184969..187598TCONS_00017033-exon-sc0000257-1510915933:184969..187598Clytia hemisphaericaexon
TCONS_00017033-exon-sc0000257-1575043694:184969..187598TCONS_00017033-exon-sc0000257-1575043694:184969..187598Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000257supercontigsc0000257:174905..187598 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000101015	0.00109934	0	0.30921	0	0	1.43563e-07	0	4.89667e-06	0	2.34398e-07	7.84472e-07	1.14935e-08	0	0.343949	0.231497	0.161806	0.278218	0.527101	0.512876	0.220295	0.21847	0.0170978	0.103295	0	0	0.0412574	0.0740953	0.00071217	0.126762
Blast
[Close]
BLAST of TCONS_00017033 vs. Swiss-Prot (Human)
Match: CCNF (Cyclin-F OS=Homo sapiens GN=CCNF PE=1 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 9.847e-71
Identity = 161/499 (32.26%), Postives = 279/499 (55.91%), Query Frame = 3 
Query: 1128 LPNELSIKILEYFNAKELISLRLVNNHFKNLIDGTPSIWSRVSYQNMWPSTQKDYSLFRRGSNHGNVESLTKLGLSHLYHYNLTVGEEKNKKDVQEHSIKAANYLHNLD-LNIHPNKPLTWMLIRPPWSMSKSICLKHLVHTQMLTLKESKMN--GPLCYNIGRIFNLESDNNSNKEKSTENFLQSCDLRCSHAKFELLLARKNEISADAGKTLQWVRELRECAMTGNKEAIFELVGFALSNNSLFIEDMLNMNKLSKNLFSNCQCVRVDKLELYQPKINSLMRCILVDWLAEVAYMKDMSHEVLHAAVSYVDRYLMSRVVERTKLQLLGISCLLLAAKSHYDARQVHILTVRESSWLTDQTYQYEDVVKMMGEIIGAFAGDLWKPTSWNYLHTILALPMIDDTWKSCCHYVHDLTLQFTLFGSYKPSVVACSSLFLAGLILDRDNSWPSELEEVTGFHVKDIANCASLIHYKSFTCSSMKDDRGLPLESIKARYRSQR 2615
            LP ++   IL++ + ++++++R V++  K+L+D   S+W+  S+Q +WPS   +  LF R +  GN E+  KLG+++LY+  L+V +E      + + +KA+ +    + LN+    P  W+ IRPPWS+S S C K +VH  +    + +      + + +GR+ +L  D    ++++ + F ++    C  + + L  + +    +D G+ L   R+LR+ A  G  EA   L     + N L +E +   +++   LF   Q V   ++   Q  +N  MR IL+DWL EVA MKD +   LH  V  VDRYL  R+V R +LQLLGI+C+++  +  + +++  ILT+RE+ WLTD TY+YED+V+MMGEI+ A  G +  PT  +Y   +L L  ++   +  C ++ +L+L  T   +Y P+ +A ++L LA L   +   W ++L ++TGF  +D+  C   +H K F   + KD R + L ++K R+  +R
Sbjct:   35 LPEDVLFHILKWLSVEDILAVRAVHSQLKDLVDNHASVWACASFQELWPSP-GNLKLFERAAEKGNFEAAVKLGIAYLYNEGLSVSDEAR---AEVNGLKASRFFSLAERLNVG-AAPFIWLFIRPPWSVSGSCC-KAVVHESLRAECQLQRTHKASILHCLGRVLSLFEDEE-KQQQAHDLFEEAAHQGCLTSSYLLWESDRRTDVSDPGRCLHSFRKLRDYAAKGCWEAQLSLAKACANANQLGLE-VRASSEIVCQLFQASQAVSKQQVFSVQKGLNDTMRYILIDWLVEVATMKDFTSLCLHLTVECVDRYLRRRLVPRYRLQLLGIACMVICTR--FISKE--ILTIREAVWLTDNTYKYEDLVRMMGEIVSALEGKIRVPTVVDYKEVLLTLVPVELRTQHLCSFLCELSLLHTSLSAYAPARLAAAALLLARLTHGQTQPWTTQLWDLTGFSYEDLIPCVLSLHKKCFHDDAPKDYRQVSLTAVKQRFEDKR 521
The following BLAST results are available for this feature:
BLAST of TCONS_00017033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCNF9.847e-7132.26Cyclin-F OS=Homo sapiens GN=CCNF PE=1 SV=2[more]
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