TCONS_00016980 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016980
Unique NameTCONS_00016980
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016980 ID=TCONS_00016980|Name=TCONS_00016980|organism=Clytia hemisphaerica|type=transcript|length=834bp
NTGCATGAAATTTGCCGCCAGCAATTTAAAATAGCCAGTACCATTTCAAC
TTACTTGGCTACCTATCATGGAAGGAAAATACAAGATTCATTCATTGACC
TTGGAAGCTATTATGAAGAATATGTGAAAGAGAAGAAGAAAGCAATTAAT
TTGTACTTATATGTAGACACACCATACATGAAAATTGGGTTCAAGTGGGC
ATTAGAACAAAACAAAAGTAGTGATGATGACAATGATGACACTTACCAAt
caGGCAGTAGTTCAACTTTGATAATATGTCCTATTTGTCATTGTACTTCA
CCACCAAACACAGAATGTGTACGATGCGTCCAAAATAGTGAGCTTGAAGA
AAGTCTTGCTGCTGACCAAGTACGGCCCATGGAGATTGAAGATGGTCGAG
TTGATGATGGTCAATTCGAAGATGATCAATTCGAAGATGGTCAATTCGAA
GATGGTCAAGTTGATGATGGTCAATTCGAAGATGGTCAAGTTGATGATGG
TCAAGTTAGAAATGCGAGGCTCAACTTTTTTAACAACATTAGAATGTCAC
AGGCTGAGCCCATACAACCAACCACATCATTTATCAATTCTGTGCAAACT
CCaaTAAGTGCTGTACCATCACATCCCAGACAGCCAACCACATCATCTGT
CAATTCTGTGCAAACTTCaaTAAGTGCTGTACCATCACATCCCAGACAGT
CAACCACATCATTTGTCAATTCTGTGCAAACACCAATAAGTGCTGTATCA
TCACATCCTAGACAGCCAACCACATCATCTGTCAATTCTGTGCAAACACC
tgcAACTGGGGCTATTGACACCACCTCCGATCTT
Run BLAST on NCBI

transcript from alignment at sc0000255:348279..351911-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016980 ID=TCONS_00016980|Name=TCONS_00016980|organism=Clytia hemisphaerica|type=transcript|length=3633bp|location=Sequence derived from alignment at sc0000255:348279..351911- (Clytia hemisphaerica)
NTGCATGAAATTTGCCGCCAGCAATTTAAAATAGCCAGTACCATTTCAAC
TTACTTGGCTACCTATCATGGAAGGAAAATACAAGATTCATTCATTGACC
TTGGAAGCTATTATGAAGAATATGTGAAAGAGAAGAAGAAAGCAATTAAT
TTGTACTTATATGTAGACACACCATACATGAAAATTGGGTTCAAGTGGGC
ATTAGAACAAAACAAAAGTAGTGATGATGACAATGATGACACTTACCAAG
TAAGTTTATCTAAAAAACAAAACCTTTTTTTAATTAAAATTCTCTGATTT
GTATAATTCAAGTTGCGCGAAAAATACAACTGTGTGAAAAAAATTTAGAG
GGGGCCTTTTTTTTGGACATGATGAAAAGATTTTGTCGAATGGAAGTATT
TCAAAAGTTCTCAAAATTTTTTGTTTTGGAGGGGGATGTACGAACAAAGG
GTTGAGTAAAATTCTCTTTTATTTTCAATTTTTCAGTCAGGCAGTAGTTC
AACTTTGATAATATGTCCTATTTGTCATTGTACTTCACCACCAAACACAG
AATGTGTACGATGCGTCCAAAATAGTGAGCTTGAAGAAAGTCTTGCTGCT
GACCAAGTAAGTATACCTTAAGGGAACCAAGTAAGTATACCTTATTTGCA
TTTGACAGTTTATAAAAATTGGCCAATCAAAATGCCTTAAGACCTGTCAA
TCAAACTGTTTTATACAAATATTATAGGAATTACTTTCAATGGTGCCTTT
CAAATGAACCTAGCTGTTATTGAGCCAGTTTACACCCTAGATGAGGTTTC
TTGTTACACTCAAAAAGAGTCATTCTTTTGAGGACCTTGATGGCATCTTT
GATGGAAGTTTGTGTAGGTGGCAGGATTGGGTCATCAATTTTTTAGACAT
CAAAAAAGCTGTGCGATTTGAAAAAATTTTCGAATTACATGAGCTTTCTC
ACAATGTTTTCAGGCTTAGCCCTAAGTCTGAAGGGACCGAAGATTTTGTT
TGAATTATATGAGTTTTCAAATTATAGGAATTACATGAGTTTAACTGTAA
TCATAACTTTCTTTGCTTTCTCTTTATAGGTACGGCCCATGGAGATTGAA
GATGGTCGAGTTGATGATGGTCAATTCGAAGATGATCAATTCGAAGATGG
TCAATTCGAAGATGGTCAAGTTGATGATGGTCAATTCGAAGATGGTCAAG
TTGATGATGGTCAAGTTAGAAATGCGAGGCTCAACTTTTTTAACAACATT
AGAATGTCACAGGCTGAGCCCATACAACCAACCACATCATTTATCAATTC
TGTGCAAACTCCGTAAGATTTAACTTCTACTGGAATTTTTTTAGTTCTGT
TCAACTTGTTTGTACTTATTAGATGTTAGTACTTATTAGAAAGACTGTTT
AAACATTATAAGAATAATGAAAATTTTTTGTTTACAGAATAAGTGCTGTA
CCATCACATCCCAGACAGCCAACCACATCATCTGTCAATTCTGTGCAAAC
ACTNCTGCTGACCAAGTAAGTATACCTTAAGGGAACCAAGTAAGTATACC
TTATTTGCATTTGACAGTTTATAAAAATTGGCCAATCAAAATGCCTAAAG
ACCTATCAATCAAACTGTTTTATTCAAATATTGTAGGAATTACTTTCAAT
GATGCCTTTCAAATGTACCTAGCTGTTATTGAGCCAGTTTACACCCTAGA
TGAGGTTTCTTGTTACACTCAAAAAGAGTCATTCTTTTGAGGACCTTGAT
GGCATCTTTGATGGAAGTTTGTGTAGGTGGCAGGATTGGGTCATCAATTT
TTTAGACATCAAAAGTCAAAAAATTCGAATTACATGAGCAAAAAAGCTGT
GCGATTTGAGAATATTTTCGAATTACATGAGCTTTCTCACAAGGTTTTCA
GGCTTANTCACATCCCAGACAGCCAACCACATCATCTGTCAATTCTGTGC
AAACTTCGTAAGATTTAACTTCTACTGGAATTATTTTTCAACTCTGTTCC
ATTTACTAAATATTCAAAGGCTTCAAAGTAAACTTGCAACAATCGATGTT
TGTACGTATAAGAAAGACTGTTAAACATTATAAGAATAATGAGAATTTTT
TGTTTACAGAATAAGTGCTGTACCATCACATCCCAGACAGTCAACCACAT
CATTTGTCAATTCTGTGCAAACACCGTAAGATTTAACTTCTACTGGAATT
ATTTTTCAACTCTGTTCAATTTACTACATATTCAAAGGCTTCAAAGTAAA
CTTGCAACAATTGATGTTTGTACTTATAAGAAAGACTGTTAAACATTATA
AGAATAATGAGAATTCTTTGTTTACAGAATAAGTGCTGTATCATCACATC
CTAGACAGCCAACCACATCATCTGTCAATTCTGTGCAAACACCGTAAGAT
TTAACTTCTACTGGAATTTTTTAGATTTATAGGCTATAAAGTCTTTGGGC
TTTTTCTTGGGTTGTTCTTATCTCTTGGCTGCTTTGGGGCTTCTTAGGGG
AAAGAATGCACCCCATAATAGTCCTAATGGAGTCTTTTAGAGATTCAATA
TAAATTTCCCAGAATTTCCGTATAATTATTTACAAAAGATAAGTACATCA
TTCTTCGATCCCTAATTCATACACTTAGAGCTTAAAAGCATTTTCATGAT
AACCAAACGAAAAATGTCCTTTAACTATATTTATGTTTTGTTTTTTATCA
ACGTAAATTATTTCATTTGGAAATTATTTTGTTGTAAAACAATGAAAGGC
TATAATTCAAATAGTGGGTAACCATAGTAACAAAGCAACCATAGTAAACG
TTCCAGGTGTTATTATTTTCAAGAAATCATATTTATAAGAGTAAGGCAAA
GGAGAGAACGAAAAACGAAATAACTCGAAAAACTAACGCACATCGCTGAA
GAAAAAACTATTTAAAATATCTTTGTGGTTCCCAAAGCTAAAAGCCATAA
GAAGTAACCAGAAAGAATGAAAATACACCACTCTCAGTACTCTTTTTTAT
AAGTATACAAGAAAATTCGCTTAAGCTTGATATACTTAGCAAATTTTTAT
TTTTGCTTAGATTTAGACCTCTTGAATTCTATTTATTGGCTTCATTCGGT
TAAATGCCAAAGATCGGTGGTATTATTGAGAAAAGACATGACTCAAGAAA
TGATTTGGACAGTTAAGATGAACTGCCTGCCAGAAATGGCAGAAGGCCTA
GAATAGACACTTTTAATGAGTTTTAGAAGTCATTAACAGATGTGAAAAGA
CGAGAGAATGATAAATGCGCTTGGGGAATTTAAATTAGATTCAGAGTTGT
AATCAGAACCATATAAGTAAAATTTCCGTTTTTACATCCACTCGAGTTTC
TTTGTTACTTATTCTCTTGTTTCTCTGTTTGTTTGTTTCTCATTTCCAGT
CAGTGTCGGTTCTCTCCTAAATTATTTTTCCCTGGTATGTTATTCAATTT
GTTAACTTTTTGACAAAAGATGTAGGAAACAACACAATCACAATTCATAA
CAGTGTAAATGGAAGCCCCTCTGATCGAGTGACGAAAGAGAACTTTAAAT
TACTTGATTTACCTGGTCTGAACTGAATGGTGTATATTTTTCATTTTAGT
GCAACTGGGGCTATTGACACCACCTCCGATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009503XLOC_009503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016980-exon-sc0000255-1575043694:351663..351911TCONS_00016980-exon-sc0000255-1575043694:351663..351911Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1575043694:351306..351425TCONS_00016980-exon-sc0000255-1575043694:351306..351425Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1575043694:350600..350832TCONS_00016980-exon-sc0000255-1575043694:350600..350832Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1575043694:350436..350474TCONS_00016980-exon-sc0000255-1575043694:350436..350474Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1575043694:349955..349981TCONS_00016980-exon-sc0000255-1575043694:349955..349981Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1575043694:349737..349802TCONS_00016980-exon-sc0000255-1575043694:349737..349802Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1575043694:349519..349584TCONS_00016980-exon-sc0000255-1575043694:349519..349584Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1575043694:348279..348312TCONS_00016980-exon-sc0000255-1575043694:348279..348312Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1510915933:351663..351911TCONS_00016980-exon-sc0000255-1510915933:351663..351911Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1510915933:351306..351425TCONS_00016980-exon-sc0000255-1510915933:351306..351425Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1510915933:350600..350832TCONS_00016980-exon-sc0000255-1510915933:350600..350832Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1510915933:350436..350474TCONS_00016980-exon-sc0000255-1510915933:350436..350474Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1510915933:349955..349981TCONS_00016980-exon-sc0000255-1510915933:349955..349981Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1510915933:349737..349802TCONS_00016980-exon-sc0000255-1510915933:349737..349802Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1510915933:349519..349584TCONS_00016980-exon-sc0000255-1510915933:349519..349584Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1510915933:348279..348312TCONS_00016980-exon-sc0000255-1510915933:348279..348312Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1491911889:351663..351911TCONS_00016980-exon-sc0000255-1491911889:351663..351911Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1491911889:351306..351425TCONS_00016980-exon-sc0000255-1491911889:351306..351425Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1491911889:350600..350832TCONS_00016980-exon-sc0000255-1491911889:350600..350832Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1491911889:350436..350474TCONS_00016980-exon-sc0000255-1491911889:350436..350474Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1491911889:349955..349981TCONS_00016980-exon-sc0000255-1491911889:349955..349981Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1491911889:349737..349802TCONS_00016980-exon-sc0000255-1491911889:349737..349802Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1491911889:349519..349584TCONS_00016980-exon-sc0000255-1491911889:349519..349584Clytia hemisphaericaexon
TCONS_00016980-exon-sc0000255-1491911889:348279..348312TCONS_00016980-exon-sc0000255-1491911889:348279..348312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000255supercontigsc0000255:348279..351911 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	4.90039	2.20257	6.40384	0	0.665335	2.20305	1.84924	1.90222	1.22536	1.33852	0.446965	1.58012	0.7539	0.97101	1.34662	0.864209	1.08112	0.810742	0	0	0.139203	3.318	1.62415	0	0.702131	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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