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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016923 ID=TCONS_00016923|Name=TCONS_00016923|organism=Clytia hemisphaerica|type=transcript|length=2546bp
GTACCATGCAAACATATAATAAGGATACCCTTTTTCGTAGAGCCATTTCA
TTGGTAAATATTGGGCCCTTACCCTTTTATCAAAATAGAGATACTTAAAA
TGATAATATATGTACCGGGCTAAGTATGCTGGCCAACTTAGCGGGAGGGA
CCTGTAAACACAAATCGAAGACTTTTTCAAAGAAAGTCGCTCGCCGCTTA
GACGTACCACAGGAAGTGATAAACTTTTCCAAGTACCTGGTATCAACAAA
TCTTGTAGTTTTATCAATCATGACTACCTGTTATAAATGTGGAGATGAAG
GGCATTATGCTTATGCTTGTCCTGATCAAGATGGTCAAGTTAAATCATCT
GCTGATCGAGAATGTTACAAGTGTGGTGAATTGGGGCACATCTCACGTGA
TTGTGGTTTAGCGTTACGTGAAGGAGTGGACAACGGAAAGTCTTGTTACA
ACTGTGGACGTATTGGACACATCTCAAGAGATTGTCGTAAACAGCGCAAT
AATGCTGGTGGTCGTTGCTACAAATGTGGAAAATCAGGTCATTTTGCTCG
GGAGTGTGAAGCAGAGGAAGGCAGATGTTACAACTGTGGAAAAGGCGGTC
ACATAAAGGCTGACTGTACTGAAGAGGAGCAGATGCAGCAAAATGAATCC
ACATGTTACAAATGTGGAGAAACTGGCCATTTTGCACGCGAttgtgaaaa
tgaagaaaacgatCGTGGGCTTGCCAGCGTTTCCTGTTATCGATGTGGTG
AAAAAGGTCACATGGCCAAAAACTGTGAAAGCAGTGCTGAAACATGCTAC
AATTGCAAAAAGCCAGGCCACAAAGCACGTGAATGTGGAGAAAAGCTTCA
AATGACCTGCTATAAATGTAATACTCCTGGTCATTATGCAAGGGATTGTG
AGAACGAGGAGTAGATCTCTGTGTGCCATTTGAAGAACAATGTTGGTGTA
TAGTCGGAATATTTTGTGTGCTGGCCAAGAGGTGGTATGGAAAAAAGCTC
AGAAATTCCTTTGTCCTTAAAACATCAAGTGACAGAAGGGGAGTATTTTA
CACTTTGGAGCTTGCAGATGATTGCAACTTTGGTTGTCCAAGTTGGATAT
ATATGATGAAATTAAAACTCATGAGATGGAGAGttttccctttctttttt
aattttaatttaggAAAGTGGTTTTATTGTCTCAACTACCAATAATTATG
TGGGATCTAAATGAATaacattttttgttattttgttagtTGGAGAAGCA
TctcttttaataattttttattaatttttttggatgtaTTCCATTTAAAC
CATGTTTCAGCAGAATgtgttttgaagctatttttggtttgaaaaaaTGC
CCTCTTTTAAACTAACCCCTTAAAGAGATTGATTAAAGTAATGCCTGTGT
CTTTAATAAGATAACCTGGCTCTGAATGGAGAAGTTTGGTGTACCGTTgt
cgtttaaaaaaaaaatttatgtgcAACATTCTGACTGTCTTCCTGTTGTC
ATTGGCAGGAGACTTTCAAATGCTGCacttatttttaatattattatttt
ggTAAAATAGTACCTTTTCCCAATTTATCGGATTCCCCTTTAGTCTACTT
TGCCGTCTTATTGTCACATAGTCGTTCCAATTTCAAAATATGAGACATTT
TAAATGGAAATAAACCAGTTTTGAAATGGGGAAAAATGTCTCTTATAAGT
TATTATTCTGTATCAAATTTATTAATCACAGTGTTGAACTATTTTGAAAA
TGAGTCCTTATATTAAGCTGGTATCCTAATTTCAACTAGAATGGATAGAT
AATCTCAAAGTagaaatctttaaaatcaacaaaatgcaACTTGATTTTGT
AGAAAGCCATTTTTATGATAATCTAATCCATCAATAAGTTTATGGGATTC
AAATTTANTGAAGGGATAGATAATCTCAAAATagaaatctttaaaatcaa
caaaatgcaACTTGATTTTGTAGAAAGCCATTTTTATGATAATCTAATCC
ATCAATAAGTTTATGGGATTCAAATTTACACTTTTctgtttaatttcttt
ttctttctataTTTTACTTTTACACTAGCATATAACGGTGAAACAAAATT
GTAATTGAACAACCTCTTTATTGTGCAATTATCACCAGTTTTTAAATATA
TACTATTATGACTTTGCCGACTGAAATTTAAAGTATTGATTATTATATTA
AAGGGGGTTAAGTTAATGTTGGTTAGAATGTGAGTTGTTGGGTATTTCTA
CACAATCATTAATTGAGTCGGGAAAttacaatgggcttttccaaaaaaat
tcgttcatggggggtggaggatatattattttttctgtgatctacccctg
gacatttcgattttcaCCCCCTGGGCACgtgttttacccctggacaagca
tcaagttgaccccctggacacaaatATTTATCCCTGGACATCGCAGATTC
ACCCAatggacatggcagtttttcagggttttttcaagatccctggacaa
tatatcctccaccccccatgaagggtttttttctggaatagcccaa Run BLAST on NCBI protein sequence of TCONS_00016923-protein >TCONS_00016923-protein ID=TCONS_00016923-protein|Name=TCONS_00016923-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
MLANLAGGTCKHKSKTFSKKVARRLDVPQEVINFSKYLVSTNLVVLSIMT
TCYKCGDEGHYAYACPDQDGQVKSSADRECYKCGELGHISRDCGLALREG
VDNGKSCYNCGRIGHISRDCRKQRNNAGGRCYKCGKSGHFARECEAEEGR
CYNCGKGGHIKADCTEEEQMQQNESTCYKCGETGHFARDCENEENDRGLA
SVSCYRCGEKGHMAKNCESSAETCYNCKKPGHKARECGEKLQMTCYKCNT
PGHYARDCENEE Run BLAST on NCBI transcript from alignment at sc0000254:339963..351252+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016923 ID=TCONS_00016923|Name=TCONS_00016923|organism=Clytia hemisphaerica|type=transcript|length=11290bp|location=Sequence derived from alignment at sc0000254:339963..351252+ (Clytia hemisphaerica)
GTACCATGCAAACATATAATAAGGATACCCTTTTTCGTAGAGCCATTTCA
TTGGTAAATATTGGGCCCTTACCCTTTTATCAAAATAGAGATACTTAAAA
TGATAATATATGTACCGGGCTAAGTATGCTGGCCAACTTAGCGGGAGGGA
CCTGTAAACACAAATCGAAGACTTTTTCAAAGAAAGTCGCTCGCCGCTTA
GACGTACCACAGGAAGTGATAAACTTTTCCAAGTACCTGGTATCAACAAA
TCTTGTAGTTTTATCAATCATGACTACCTGTTATAAATGTGGAGATGAAG
GGCATTATGCTTATGCTTGTCCTGATCAAGATGGTCAAGTTAAATCATCT
GCTGGTATGTATTTTATAACATAATTCTCCTTTTCATTTCATAATTATTC
AGAAACAAACACTTTGGTTTTTCTGgtgttttaatttttgagatAAGATA
TGATTGATAGGTAATTGAGTTTATTCTAGAATCTCAAGTACCAATTGGCT
ATGGATTTTGTGATCAATCCATCATCGACAAGTGAGCCCCCCTTAAAATA
GAGCTGCCAGTCGctatttcaaacttatttttttcacattcAAAACCTAT
GCCATTTGAAAGCCCCTATCATGATAGAAAAAATGAAGGGTCGTTTACCT
AGCTGGGAGACCTgtctactctgttcgtgtgattttgaagtatagcattt
agttaaaacgaataataatctagaaataacagagtagccggggatttttg
tagatgccaaatctggtcgcagaattctattgactgttaaacaattgttg
aaatcatgtgattttattgttttgattggaagtgcgctaacctgattggc
taaccttatcaacggcttttttggtACGAAATTCAagccaaatgtaaaca
aattcaaactgggccaaaaataccatactctcaatgatagggtgcgcact
cgtcgggattttttgcgcggaacgaggaagaatttacaaaaatgaacttc
aatgcattagtacttacctttaaatcatccaNNNNNNNNNNNNNNNNNNN
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ataaatgacccctcatttttctcacaaaggtaaggactttcaaataaaat
tagtttggtttctaaaaattgagggaaaaattttggcctgtccaccctat
cAATGAGTAGCTtttgatgggatttttgcttatgcggtgtaagtttgaat
agagagtatggatctccagactatcATTTACCTGGCAAAAAgttttagtt
cttgagatatatCGATTTGAAGTTTCAATCATCAATGTTACAGCTTTGGT
AACAAGACAcatgcgtttggtttgggaacgcgaaacacgacccatgtcta
aacttctcaatatatctccagaacgaacagattttttgaaattctgtaaa
aaggtccaagttcctgaatagttttactatgttctgcaaaaaaatcataa
ccataaGTCAAATTGAAGACAAAATTTGTGTAGAAAAATAAACCTAGCTG
GGAGACTctgtcagttacatcaaaatgcctcgaaaatgtcaatatgaaaa
ttgcgtaatcagagaacgtatgtctcgctcattataaaaaggctgaaaca
aactttcaataattggattgtaacatcgagttaagtctcttttgttaagt
taccagggggtaaataaaacagaccttgatacatttatcgttcgtttNNN
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NNNNNtgttctcacacttatgtctttttttttcgcgtccttttctgtgat
tacttttatttatatttttaaagacaggtaagaaggcatattgatgtaac
tgtctgtTCGTGTGATTTCGGAGTATAGAatttagttaaaacgaataaaa
acatagaaataacagagtagccgggtatttttgtagatgccaaatctggt
ttcagaattctattggctgtcaAACAATTGTTCTggttgaaatcacgtga
tattattgttatGATTTGCCGATCAGGTCAACCTTATCAACAGCTTTTTC
GGcatgaaatttaaagtaaatgtaaacaaattcaaactgggtcaaaaata
ccatactctcaattagtagcttctgatgggacttttgcttatgtggtgta
agCTTGAATAGAGCgaatggatctccagactaaaataaaccttgagcaca
aaaaatgctttttaaaacacttttttccactgaaaaacaaataaatttta
tagacttaccttccccaaacattgaagaagcctccactaattaaagtaaa
tgagataagataagataaaaccttaaaatcaaccagaatttacaacattt
catccaaagcaaaagacatgCTTTTCtcaccgccatcttgttttagaatg
agaattatttttggTTCCAGTTCCCACggtctttttttcatccaatcaga
ttgcgcgatttcgctttctctagtccccAACTAAATTCCGCGATTTTTGG
CACACAGTttcgatagaccttttcgcctttccatccgccatattgaattg
tgagcaaaaattatggtggccgaattgccgtggtgaaattcccttagaaa
gtatgcaaaacatatgcaaaaagaaagtattaatataaaacttacatatg
cataattggcattgtATTAAAGTgcaatcttgtagaagaaagattgaatt
tgcttcttttgaaaactagaaataatcaaattcgctcatGCTCTCAGAAC
AAGCACttaaaaaaaccataacattatacataaactcaaactgaaaaatc
gcCCGCGAAGctaaaaaaataatccttattcggctgacagtaaattattc
tcctgggaataagAACTgccaaacgatcaaatcaaaacattgatctgaac
ccgctgaatgtgtgacgtcataattactgcttttagtttgcgtgttttga
aagtttgatgtgtgtactccgtcttggtagaattttttaatggcatgaaa
acagaagatgcaatgtctttaagaacaaattcctaaaaggctttcgttgt
tctgtaaatatttctttttgttctgtaaatatttctttttggattactgt
aagaaattccatcttttattgttctaatgattataatatttctttatcca
agatgctttgttttctttttcatctttgtgtaaacttgcatatgttttac
ATATTTTCGAACTAAATCCGACCacagctttttcgttcctctatttttgc
atacaattcaagatggcgaatGGAAAGGTGAAAAGGTCTCTTTTGCTCAA
CCAAATCTTAAAATGTCTTTTTTGACAGACCAAATTCTAGAAAAGCAGGG
TAGTGTCTGTTATGACcaaaaaagggcacttttttgCTGATTTAATTCAT
AAAACAGGCTATTTTTAccatcatttttattaattCTTGAAGGGCACGAA
AAATGGTCTGTTTGACCAAAATCCAGAGGAAAACCCAAGCAAAACATTGA
TTATTAAGGAAAAGCAGGAATCATGTGGTGAAAGCATGGTGAGAAAATCA
TGCCAGTAGACAAAAGACATAACTTGTAATTGTTATtgggcagttccaga
aaaaaCCCATTACACCCCTGTGGACTACaacgatttttggaattttttat
cacttggaaatcttaaaaaagtttaaagaggATTCAGAAAATCCAGGGTT
TTTCCTCCTTGCTCGGTCATTAGTATcggaaaattcataaaattagCTCT
TATTTTCTTGCCAGGTATCGGAAATTCCTTGAATGTAAGCGACCCTTTTG
CCGCCCTACTTAAAATCCATACTTCAGTGGCAGATTCATAActgcaattc
ggccaccatttcaccaaacctctaAAGTCATTAATTTGAGTCAATGCAaa
cgggaaattacaaaatacacAAATACGATTTTGCACGTAGGCTTTttaat
cgaaatatgaaaaaatttgtagtggaacacacgtctggaacaaagaagaa
caaattagtagCAAAACGATAGAGCGTTTGATGTCACTCACGTgccaagt
tacacactcgttacttgttaatcccatcaggcggttaggcggcgaaTATT
CTCTATTTCTCCAAccaagttaaaaagggcgcgctgtcagtgaaagttat
catgacatgttatgacagtaAGTATGATtaataaacttggtggagttatc
aaaacaaatttgtgaaaatacaggccagatatcaacaatcccatgtttcg
accaatcgtcccaagttagagcagttgacggtagcacTTGAATTCGAAGG
TTGCAAAACCTCAAANCATATATCAACAATCCCATGTtacgaccaatcgt
cccaagttagagcagttgacggtagcacTTGAATTCGAAGGATGCAAAAC
CTCAAACAGGATTAATATTTTCAGAATTATGCCCAAATAAGTCAAAatcg
tcccgtaattacccTAAATGACTATATTATATTTAAGTGGGGGGATAGAT
GTTGACAATTTACCAGATTTTAAAAGCTTTAACATGTATAAAAAAATCTG
CATCGGTTATATCAGATGATGAAGTATATTTACTGGTTTGGCTGGTTTAT
AGCTCATCTGGTAATGTCATCTAATTGATTTGCCTTTTACAATACAATAG
CTACCTAGGGACAAGATAATTTGTACTGTTTTTACTGGTTGAGGGAATGT
AATATGCTGGAGTAATTTGTTTCTCATTCGCCTAAAAGACATTACAGAGC
AGATATTACCCTGCCCAAATGGCAGGAGTAATTAATGTAGAACTGAGTCA
ATAGGTTGTTAAGATCTCTCTAATGCTATGCTAAACTCCAATTGATGCTC
GTGATTTGAAACTAAGAACCCCGTGATTTGAAACCATGATCCCCTCCGAA
CCAGTTTACTTACATAACACAGCAGAGCAGATATAATTGGAGTTGAAATT
TTCAAGGTCAGAGGCACAATTTCGAAAAAAGTTTTCATGCCAGGGCTAAG
TTAACAGAACATTGGCCAATCAAccactttttcttgtttttttttcatag
tcTATGCAGAAAAgctgcaaaatttaaaaatgttagGGAATTTGACAATC
TAAAGTTTACTTACGATGAAACATTTCATTTCTAGATCGAGAATGTTACA
AGTGTGGTGAATTGGGGCACATCTCACGTGATTGTGGTTTAGCGTTACGT
GAAGGAGTGGACAACGGAAAGTCTTGTTACAACTGTGGACGTATTGGACA
CATCTCAAGAGATTGTCGTAAACAGCGCAATAATGCTGGTGGTCGTTGCT
ACAAATGTGGAAAATCAGGTCATTTTGCTCGGGAGTGTGAAGCAGAGGAA
GGCAGATGTTACAACTGTGGAAAAGGCGGTCACATAAAGGCTGACTGTAC
TGAAGAGGAGCAGATGCAGCAAAATGAATCCACATGCTACAAATGTGGAG
AAACTGGCCATTTTGCACGCGATTGTNCGCAGCAAAATGAATCCACATGT
TACAAATGTGGAGAAACTGGCCATTTTGCACGCGAttgtgaaaatgaaga
aaacgatCGTGGGCTTGCCAGCGTTTCCTGTTATCGATGTGGTGAAAAAG
GTCACATGGCCAAAAACTGTGAAAGCAGTGCTGAAACATGCTACAATTGC
AAAAAGCCAGGCCACAAAGCACGTGAATGTGGAGAAAAGCTTCAAATGAC
CTGCTATAAATGTAATACTCCTGGTCATTATGCAAGGGATTGTGAGAACG
AGGAGTAGATCTCTGTGTGCCATTTGAAGAACAATGTTGGTGTATAGTCG
GAATATTTTGTGTGCTGGCCAAGAGGTGGTATGGAAAAAAGCTCAGAAAT
TCCTTTGTCCTTAAAACATCAAGTGACAGAAGGGGAGTATTTTACACTTT
GGAGCTTGCAGATGATTGCAACTTTGGTTGTCCAAGTTGGATATATATGA
TGAAATTAAAACTCATGAGATGGAGAGttttccctttcttttttaatttt
aatttaggAAAGTGGTTTTATTGTCTCAACTACCAATAATTATGTGGGAT
CTAAATGAATaacattttttgttattttgttagtTGGAGAAGCATctctt
ttaataattttttattaatttttttggatgtaTTCCATTTAAACCATGTT
TCAGCAGAATgtgttttgaagctatttttggtttgaaaaaaTGCCCTCTT
TTAAACTAACCCCTTAAAGAGATTGATTAAAGTAATGCCTGTGTCTTTAA
TAAGATAACCTGGCTCTGAATGGAGAAGTTTGGTGTACCGTTgtcgttta
aaaaaaaaatttatgtgcAACATTCTGACTGTCTTCCTGTTGTCATTGGC
AGGAGACTTTCAAATGCTGCacttatttttaatattattattttggTAAA
ATAGTACCTTTTCCCAATTTATCGGATTCCCCTTTAGTCTACTTTGCCGT
CTTATTGTCACATAGTCGTTCCAATTTCAAAATATGAGACATTTTAAATG
GAAATAAACCAGTTTTGAAATGGGGAAAAATGTCTCTTATAAGTTATTAT
TCTGTATCAAATTTATTAATCACAGTGTTGAACTATTTTGAAAATGAGTC
CTTATATTAAGCTGGTATCCTAATTTCAACTAGAATGGATAGATAATCTC
AAAGTagaaatctttaaaatcaacaaaatgcaACTTGATTTTGTAGAAAG
CCATTTTTATGATAATCTAATCCATCAATAAGTTTATGGGATTCAAATTT
ANTGAAGGGATAGATAATCTCAAAATagaaatctttaaaatcaacaaaat
gcaACTTGATTTTGTAGAAAGCCATTTTTATGATAATCTAATCCATCAAT
AAGTTTATGGGATTCAAATTTACACTTTTctgtttaatttctttttcttt
ctataTTTTACTTTTACACTAGCATATAACGGTGAAACAAAATTGTAATT
GAACAACCTCTTTATTGTGCAATTATCACCAGTTTTTAAATATATACTAT
TATGACTTTGCCGACTGAAATTTAAAGTATTGATTATTATATTAAAGGGG
GTTAAGTTAATGTTGGTTAGAATGTGAGTTGTTGGGTATTTCTACACAAT
CATTAATTGAGTCGGGAAAttacaatgggcttttccaaaaaaattcgttc
atggggggtggaggatatattattttttctgtgatctacccctggacatt
tcgattttcaCCCCCTGGGCACgtgttttacccctggacaagcatcaagt
tgaccccctggacacaaatATTTATCCCTGGACATCGCAGATTCACCCAa
tggacatggcagtttttcagggttttttcaagatccctggacaatatatc
ctccaccccccatgaagggtttttttctggaatagcccaa Coding sequence (CDS) from alignment at sc0000254:339963..351252+ >TCONS_00016923 ID=TCONS_00016923|Name=TCONS_00016923|organism=Clytia hemisphaerica|type=CDS|length=2367bp|location=Sequence derived from alignment at sc0000254:339963..351252+ (Clytia hemisphaerica)
ATGCTGGCCAACTTAGCGGGAGGGACCTGTAAACACAAATCGAAGACTTT
TTCAAAGAAAGTCGCTCGCCGCTTAGACGTACCACAGGAAGTGATAAACT
TTTCCAAGTACCTGGTATCAACAAATCTTGTAGTTTTATCAATCATGACT
ACCTGTTATAAATGTGGAGATGAAGGGCATTATGCTTATGCTTGTCCTGA
TCAAGATGGTCAAGTTAAATCATCTGCTGATCGAGAATGTTACAAGTGTG
GTGAATTGGGGCACATCTCACGTGATTGTGGTTTAGCGTTACGTGAAGGA
GTGGACAACGGAAAGTCTTGTTACAACTGTGGACGTATTGGACACATCTC
AAGAGATTGTCGTAAACAGCGCAATAATGCTGGTGGTCGTTGCTACAAAT
GTGGAAAATCAGGTCATTTTGCTCGGGAGTGTGAAGCAGAGGAAGGCAGA
TGTTACAACTGTGGAAAAGGCGGTCACATAAAGGCTGACTGTACTGAAGA
GGAGCAGATGCAGCAAAATGAATCCACATGTTACAAATGTGGAGAAACTG
GCCATTTTGCACGCGAttgtgaaaatgaagaaaacgatCGTGGGCTTGCC
AGCGTTTCCTGTTATCGATGTGGTGAAAAAGGTCACATGGCCAAAAACTG
TGAAAGCAGTGCTGAAACATGCTACAATTGCAAAAAGCCAGGCCACAAAG
CACGTGAATGTGGAGAAAAGCTTCAAATGACCTGCTATAAATGTAATACT
CCTGGTCATTATGCAAGGGATTGTGAGAACGAGGAGTAGATGCTGGCCAA
CTTAGCGGGAGGGACCTGTAAACACAAATCGAAGACTTTTTCAAAGAAAG
TCGCTCGCCGCTTAGACGTACCACAGGAAGTGATAAACTTTTCCAAGTAC
CTGGTATCAACAAATCTTGTAGTTTTATCAATCATGACTACCTGTTATAA
ATGTGGAGATGAAGGGCATTATGCTTATGCTTGTCCTGATCAAGATGGTC
AAGTTAAATCATCTGCTGATCGAGAATGTTACAAGTGTGGTGAATTGGGG
CACATCTCACGTGATTGTGGTTTAGCGTTACGTGAAGGAGTGGACAACGG
AAAGTCTTGTTACAACTGTGGACGTATTGGACACATCTCAAGAGATTGTC
GTAAACAGCGCAATAATGCTGGTGGTCGTTGCTACAAATGTGGAAAATCA
GGTCATTTTGCTCGGGAGTGTGAAGCAGAGGAAGGCAGATGTTACAACTG
TGGAAAAGGCGGTCACATAAAGGCTGACTGTACTGAAGAGGAGCAGATGC
AGCAAAATGAATCCACATGTTACAAATGTGGAGAAACTGGCCATTTTGCA
CGCGAttgtgaaaatgaagaaaacgatCGTGGGCTTGCCAGCGTTTCCTG
TTATCGATGTGGTGAAAAAGGTCACATGGCCAAAAACTGTGAAAGCAGTG
CTGAAACATGCTACAATTGCAAAAAGCCAGGCCACAAAGCACGTGAATGT
GGAGAAAAGCTTCAAATGACCTGCTATAAATGTAATACTCCTGGTCATTA
TGCAAGGGATTGTGAGAACGAGGAGTAGATGCTGGCCAACTTAGCGGGAG
GGACCTGTAAACACAAATCGAAGACTTTTTCAAAGAAAGTCGCTCGCCGC
TTAGACGTACCACAGGAAGTGATAAACTTTTCCAAGTACCTGGTATCAAC
AAATCTTGTAGTTTTATCAATCATGACTACCTGTTATAAATGTGGAGATG
AAGGGCATTATGCTTATGCTTGTCCTGATCAAGATGGTCAAGTTAAATCA
TCTGCTGATCGAGAATGTTACAAGTGTGGTGAATTGGGGCACATCTCACG
TGATTGTGGTTTAGCGTTACGTGAAGGAGTGGACAACGGAAAGTCTTGTT
ACAACTGTGGACGTATTGGACACATCTCAAGAGATTGTCGTAAACAGCGC
AATAATGCTGGTGGTCGTTGCTACAAATGTGGAAAATCAGGTCATTTTGC
TCGGGAGTGTGAAGCAGAGGAAGGCAGATGTTACAACTGTGGAAAAGGCG
GTCACATAAAGGCTGACTGTACTGAAGAGGAGCAGATGCAGCAAAATGAA
TCCACATGTTACAAATGTGGAGAAACTGGCCATTTTGCACGCGAttgtga
aaatgaagaaaacgatCGTGGGCTTGCCAGCGTTTCCTGTTATCGATGTG
GTGAAAAAGGTCACATGGCCAAAAACTGTGAAAGCAGTGCTGAAACATGC
TACAATTGCAAAAAGCCAGGCCACAAAGCACGTGAATGTGGAGAAAAGCT
TCAAATGACCTGCTATAAATGTAATACTCCTGGTCATTATGCAAGGGATT
GTGAGAACGAGGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016923-exon-sc0000254-1491911889:339963..340316 | TCONS_00016923-exon-sc0000254-1491911889:339963..340316 | Clytia hemisphaerica | exon |
| TCONS_00016923-exon-sc0000254-1510915933:339963..340316 | TCONS_00016923-exon-sc0000254-1510915933:339963..340316 | Clytia hemisphaerica | exon |
| TCONS_00016923-exon-sc0000254-1575043694:339963..340316 | TCONS_00016923-exon-sc0000254-1575043694:339963..340316 | Clytia hemisphaerica | exon |
| TCONS_00016923-exon-sc0000254-1491911889:348998..349295 | TCONS_00016923-exon-sc0000254-1491911889:348998..349295 | Clytia hemisphaerica | exon |
| TCONS_00016923-exon-sc0000254-1510915933:348998..349295 | TCONS_00016923-exon-sc0000254-1510915933:348998..349295 | Clytia hemisphaerica | exon |
| TCONS_00016923-exon-sc0000254-1575043694:348998..349295 | TCONS_00016923-exon-sc0000254-1575043694:348998..349295 | Clytia hemisphaerica | exon |
| TCONS_00016923-exon-sc0000254-1491911889:349359..351252 | TCONS_00016923-exon-sc0000254-1491911889:349359..351252 | Clytia hemisphaerica | exon |
| TCONS_00016923-exon-sc0000254-1510915933:349359..351252 | TCONS_00016923-exon-sc0000254-1510915933:349359..351252 | Clytia hemisphaerica | exon |
| TCONS_00016923-exon-sc0000254-1575043694:349359..351252 | TCONS_00016923-exon-sc0000254-1575043694:349359..351252 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000254 | supercontig | sc0000254:339963..351252 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00016923 vs. Swiss-Prot (Human)
Match: CNBP (Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 9.953e-33 Identity = 79/191 (41.36%), Postives = 107/191 (56.02%), Query Frame = 3
Query: 279 CYKCGDEGHYAYACP-------------------DQDGQ-VKSSADRECYKCGELGHISRDCGLALREGVDNGKSCYNCGRIGHISRDCRKQRNNAGGRCYKCGKSGHFARECE-AEEGRCYNCGKGGHIKADCTEEEQMQQNESTCYKCGETGHFARDCENEENDRGLASVSCYRCGEKGHMAKNCESSA 788
C+KCG GH+A CP D+ Q V SS CY+CGE GH+++DC L +CYNCGR GHI++DC++ + CY CGK GH AR+C+ A+E +CY+CG+ GHI+ DCT+ + CY+CGETGH A +C + V+CYRCGE GH+A+ C A
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDL-------QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK--------CYRCGETGHVAINCSK------TSEVNCYRCGESGHLARECTIEA 175 HSP 2 Score: 114.005 bits (284), Expect = 3.264e-28 Identity = 69/186 (37.10%), Postives = 100/186 (53.76%), Query Frame = 3
Query: 351 ADRECYKCGELGHISRDCGLALREGVDNGKSCYNCGRIGHISRDCRKQRNNAGGRCYKCGKSGHFARECEAEEGRCYNCGKGGHIKADCTEEEQMQQNESTCYKCGETGHFARDCENEENDRGLASVSCYRCGEKGHMAKNCESSAETCYNCKKPGHKARECGEKLQMTCYKCNTPGHYARDCENE 908
+ EC+KCG GH +R+C G R + ++ CY+CG+SGH A++C+ +E CYNCG+GGHI DC E + ++ E CY CG+ GH ARDC++ + + CY CGE GH+ K+C + CY C + GH A C + ++ CY+C GH AR+C E
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRG---GFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPK--REREQCCYNCGKPGHLARDCDHADEQK------CYSCGEFGHIQKDC--TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTIE 174 HSP 3 Score: 79.7221 bits (195), Expect = 1.579e-16 Identity = 47/117 (40.17%), Postives = 64/117 (54.70%), Query Frame = 3
Query: 633 MQQNESTCYKCGETGHFARDCENE---------------ENDRGLASVS------CYRCGEKGHMAKNCESSAETCYNCKKPGHKARECGE---KLQMTCYKCNTPGHYARDCENEE 911
M NE C+KCG +GH+AR+C +DRG VS CYRCGE GH+AK+C+ + CYNC + GH A++C E + + CY C PGH ARDC++ +
Sbjct: 1 MSSNE--CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHAD 115
The following BLAST results are available for this feature:
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