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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016868 ID=TCONS_00016868|Name=TCONS_00016868|organism=Clytia hemisphaerica|type=transcript|length=2423bp
GAAAGCTGcggtttaaaagaaaagaacagatAAATACAGAATGTGAGCAA
AATCAAATCTGGTATATCTAGCTGTTACCAGATTCTGCAATTATCCAGGT
CTCTGCAAATAAGTAGAAATTATTTATGCAAGATTTTTTATAACCTGTCT
ATTGTTTTGGTACTACTTTCCTTAGTTTCGATGTATTTCAAGTCTTTTTG
AGATAGTCAGGATAATcctgcattttttttttttgaaataatggcTCGTC
TCACGATAATAGCATGCAAGATAATACTGATGTTATGTTTTCATTTGACA
TTTGCACAAAGCCAATCGCATCCAAACACTGACTCGTCAATCATTACAAA
CACGGTAACAGGAAACGTACGAGCTGACTCCAAAGGAAAAGCAGGAGGTG
GCGCTAAATCAGCCGCTGGCGCTGCCGCCGCTTCCGATTCATCCTCCGAA
TCTCAAACATTTACAAACACGAAAGTCAACACTCGGATCGCTACATCGTC
AAACGCACGAAGCGGAGCCAATGCGGCCGCCAAAGTCAAAACATATGCGA
ATGCAAAAACGAACACTAAAGTTGAAACGAAGCAACAGAAACCAATGACA
TTCCCACCCACTACACCTCCACAGAATACTAAAATGTCACCTAATGATTA
TAATACCGGTAACGGTACTGGACCATGCCCTTGTCAAAACTCGACCACTA
TTATTCAAGTTGTATGCCCTAATTGTACATGCCCTTGTCCACCTAATTCA
CCCCCTACCACACCGTCTGGGGAAACTACACCTAAACTAACCACCCCGTC
TGGGGAAACTACACCTCAACTAACCACCCCTTCCTCCACAACCATTACTA
CCACAAAGGGAAGTACCACCACGCCCTCGGGTGGATACACTACGCCTTAC
CCATGGTATACCACCTGTTCCCCTTGTCCGCCTTGCACCCCACCCTGCTT
ACCACCATGTACACCCTATCCACCATGTTGTCCGCCCTGTCAACTACCTG
TTTGCTACCAGGCGCAATGTCCTTATGATAAACGAAGTACATTAATGAAA
ATGTTTTCCTATTTGTTTGGTAGGAACAAagagaattgatgaaaatatat
ACACCATGAGTTTGATAAAAATTTAGATGCAATAAATATGCATCTTGTGC
CTGGTGTTAATGAATGGAGGTTACGTTGAAATAGGTGTTATGGATTTGAa
gaatgttggatgaaaagtcGGATCTTTTCTGTCTTTGTGAACCAATTATT
AGAAGGTGGTGCTCCCTGGCTTGTTTCTTGGTAAAACAGATTCAAAACTT
TGATGGAGACTTCTATAGATGCTGGATGCTCATCCATCCGTTACTGGTCA
TAACCATAACGTGCGAAATACGTAATAGGAAAAATATCAAGTACAATTTC
AAAAGCACGCTAAAGAATATTTATTGGTAGAATTTGCTTACTGAATAGAT
TATTATTTGTTTGATAGAAAATGAGAAGGAGAttgattatatttttttca
tgaatacaAATCTACGCCGGAATCATGTTTTCTTTGCCAAAACTACTCTA
AACAACAATTCGTCAATTTTTAGACTTTTCACCGTATTAAATCCACACGG
TGCAACGTGATTCGTAAAAGTACATACAGTACATACGAATCTGGAATTTA
CCCGGAAATTTaattcaaataatatttttccttcTCCTTTGATTTTTATC
ATAtctaattttgtaaatatttaaaataataataacttttttaaaaagca
atttattctaatttaataactaaTTTTGGGGTCAGTCGAAAACCTGACCT
TCCTCTGTGGTCCggccatatggcctaccctATGACCTTCTTTATGGCCC
ATACAATACAATTCAGACGGCCTCAGACCTTTGGATCTCTCTTTTTTCGA
TTCTGCACCCAAAAAACACAAAACttggtgaaaattttttgacctGGACC
AGATTCGAACTCTGGACATCATAGTGCATGGAGGCTAAATGCAAACTGAC
TGACTTTTGGTGAAGCGCTGGGGAATTATTTCAGGGGTGTCCATGGCTTG
CCACCGAGCTCAAAAGGGACCCTTAAGAGTATTATGGGGACTTGGCCAAA
GGTATTCGCCAACAGAACAGAGGCTCCAGTGGTTCTTGACTGAGAAAATT
TTATCGCTGTGCTCCACGAAACCGAAAGTACCCAGGCGGCCCCCCATCTA
AGCACTGTCCTGGCCAGACAATGCAGAACATCCATGGCTTGACAATGTTC
GGTGCTTTCATGGTTTTGCACGTGTCAATCGAATTACTTGTAATCAAAGT
GTCAAAGATAAAGACTATAAAGACTCGAAACTTATTTATTTTGTTTGTTT
ATTTTAGTCCAGCATTAGAATTTGTTTTCGCATTTTCAGAATGATAACAA
TCGAATAATTTTTTAGAGTTTTT Run BLAST on NCBI transcript from alignment at sc0000253:392052..394692+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016868 ID=TCONS_00016868|Name=TCONS_00016868|organism=Clytia hemisphaerica|type=transcript|length=2641bp|location=Sequence derived from alignment at sc0000253:392052..394692+ (Clytia hemisphaerica)
GAAAGCTGcggtttaaaagaaaagaacagatAAATACAGAATGTGAGCAA
AATCAAATCTGGTATATCTAGCTGTTACCAGATTCTGCAATTATCCAGGT
CTCTGCAAATAAGTAGAAATTATTTATGCAAGATTTTTTATAACCTGTCT
ATTGTTTTGGTACTACTTTCCTTAGTTTCGATGTATTTCAAGTCTTTTTG
AGATAGTCAGGATAATcctgcattttttttttttgaaataatggcTCGTC
TCACGATAATAGCATGCAAGATAATACTGATGTTATGTTTTCATTTGACA
TTTGCACAAAGGTGAGTAACTATGCTTTCAGCTTCGAATTTATTCAGTGA
AGAGAATTTGGGCTGTAAATTATTTTCACCATTAGATCTTCGTGCTTCAC
CAAATTGCCCCTGCCCCCCCCAATCGATTTGTCACCGATAGATGATTTAT
TTATCATGGCGTCGTTTAAGCTTTAAAATGTGTATTCTTGAATATAACCT
TCCGTTACCTCTATATACAATATTTCCAGCCAATCGCATCCAAACACTGA
CTCGTCAATCATTACAAACACGGTAACAGGAAACGTACGAGCTGACTCCA
AAGGAAAAGCAGGAGGTGGCGCTAAATCAGCCGCTGGCGCTGCCGCCGCT
TCCGATTCATCCTCCGAATCTCAAACATTTACAAACACGAAAGTCAACAC
TCGGATCGCTACATCGTCAAACGCACGAAGCGGAGCCAATGCGGCCGCCA
AAGTCAAAACATATGCGAATGCAAAAACGAACACTAAAGTTGAAACGAAG
CAACAGAAACCAATGACATTCCCACCCACTACACCTCCACAGAATACTAA
AATGTCACCTAATGATTATAATACCGGTAACGGTACTGGACCATGCCCTT
GTCAAAACTCGACCACTATTATTCAAGTTGTATGCCCTAATTGTACATGC
CCTTGTCCACCTAATTCACCCCCTACCACACCGTCTGGGGAAACTACACC
TAAACTAACCACCCCGTCTGGGGAAACTACACCTCAACTAACCACCCCTT
CCTCCACAACCATTACTACCACAAAGGGAAGTACCACCACGCCCTCGGGT
GGATACACTACGCCTTACCCATGGTATACCACCTGTTCCCCTTGTCCGCC
TTGCACCCCACCCTGCTTACCACCATGTACACCCTATCCACCATGTTGTC
CGCCCTGTCAACTACCTGTTTGCTACCAGGCGCAATGTCCTTATGATAAA
CGAAGTACATTAATGAAAATGTTTTCCTATTTGTTTGGTAGGAACAAaga
gaattgatgaaaatatatACACCATGAGTTTGATAAAAATTTAGATGCAA
TAAATATGCATCTTGTGCCTGGTGTTAATGAATGGAGGTTACGTTGAAAT
AGGTGTTATGGATTTGAagaatgttggatgaaaagtcGGATCTTTTCTGT
CTTTGTGAACCAATTATTAGAAGGTGGTGCTCCCTGGCTTGTTTCTTGGT
AAAACAGATTCAAAACTTTGATGGAGACTTCTATAGATGCTGGATGCTCA
TCCATCCGTTACTGGTCATAACCATAACGTGCGAAATACGTAATAGGAAA
AATATCAAGTACAATTTCAAAAGCACGCTAAAGAATATTTATTGGTAGAA
TTTGCTTACTGAATAGATTATTATTTGTTTGATAGAAAATGAGAAGGAGA
ttgattatatttttttcatgaatacaAATCTACGCCGGAATCATGTTTTC
TTTGCCAAAACTACTCTAAACAACAATTCGTCAATTTTTAGACTTTTCAC
CGTATTAAATCCACACGGTGCAACGTGATTCGTAAAAGTACATACAGTAC
ATACGAATCTGGAATTTACCCGGAAATTTaattcaaataatatttttcct
tcTCCTTTGATTTTTATCATAtctaattttgtaaatatttaaaataataa
taacttttttaaaaagcaatttattctaatttaataactaaTTTTGGGGT
CAGTCGAAAACCTGACCTTCCTCTGTGGTCCggccatatggcctaccctA
TGACCTTCTTTATGGCCCATACAATACAATTCAGACGGCCTCAGACCTTT
GGATCTCTCTTTTTTCGATTCTGCACCCAAAAAACACAAAACttggtgaa
aattttttgacctGGACCAGATTCGAACTCTGGACATCATAGTGCATGGA
GGCTAAATGCAAACTGACTGACTTTTGGTGAAGCGCTGGGGAATTATTTC
AGGGGTGTCCATGGCTTGCCACCGAGCTCAAAAGGGACCCTTAAGAGTAT
TATGGGGACTTGGCCAAAGGTATTCGCCAACAGAACAGAGGCTCCAGTGG
TTCTTGACTGAGAAAATTTTATCGCTGTGCTCCACGAAACCGAAAGTACC
CAGGCGGCCCCCCATCTAAGCACTGTCCTGGCCAGACAATGCAGAACATC
CATGGCTTGACAATGTTCGGTGCTTTCATGGTTTTGCACGTGTCAATCGA
ATTACTTGTAATCAAAGTGTCAAAGATAAAGACTATAAAGACTCGAAACT
TATTTATTTTGTTTGTTTATTTTAGTCCAGCATTAGAATTTGTTTTCGCA
TTTTCAGAATGATAACAATCGAATAATTTTTTAGAGTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016868-exon-sc0000253-1491911889:392052..392362 | TCONS_00016868-exon-sc0000253-1491911889:392052..392362 | Clytia hemisphaerica | exon |
| TCONS_00016868-exon-sc0000253-1510915933:392052..392362 | TCONS_00016868-exon-sc0000253-1510915933:392052..392362 | Clytia hemisphaerica | exon |
| TCONS_00016868-exon-sc0000253-1575043694:392052..392362 | TCONS_00016868-exon-sc0000253-1575043694:392052..392362 | Clytia hemisphaerica | exon |
| TCONS_00016868-exon-sc0000253-1491911889:392581..394692 | TCONS_00016868-exon-sc0000253-1491911889:392581..394692 | Clytia hemisphaerica | exon |
| TCONS_00016868-exon-sc0000253-1510915933:392581..394692 | TCONS_00016868-exon-sc0000253-1510915933:392581..394692 | Clytia hemisphaerica | exon |
| TCONS_00016868-exon-sc0000253-1575043694:392581..394692 | TCONS_00016868-exon-sc0000253-1575043694:392581..394692 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:392052..394692 + |
Blast
The following BLAST results are available for this feature:
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