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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016860 ID=TCONS_00016860|Name=TCONS_00016860|organism=Clytia hemisphaerica|type=transcript|length=1442bp
CCTTTAGCTTCGCTACCATGTGACAACATGTGGAAAGCACATTGTTTTGA
TTCTCGCAGCATTTACTCAAACTTCCTTCGCCTCCTACTACCACGGAAAA
GTTCGACTTCTTTTATTTATCTACtgcttcttcaaattttgatttttcta
gagAAGAAATGACAAGCCTTAATGTTTTACTGGAAGCTGCTAAAGCTGTT
GATATAGgGGAGGAAATCGTCAAACTCATAACATCTTGGAAAAGAATAGG
AGAGCCGAATTGAAGACCTTCttccaaaaattaaaagaaactGTACCCAT
CCTACAAAACCGTCCAAAAGCTTCAAATGTCAGTGTGCTAACTGAATCAA
TGAAATATATACAGGAATTAAATGAAATTGACAAACAGCATTCACTCGAA
ATCACTCGTTTAAGAAGATGTCGAATGTGTCTTGAAGAGCGaattaaaat
gttaaaagaagaaattgataAACTACCACCTGAAAATAGGCCTAAAATTA
TATTCAAAGAAACTCCTATCGAACCTGAAAGGGAAAGTACAGATCATGCT
AACCCTTCTCCTACTACTTCGACTGGAGCGCCTCCTAAAAAGCCGAAAAA
AGAAATGGTGTCTATAGAAATTCAAGCAAATGAGGAAGATATTCGTGATG
CATTACCTGAATCGTATGCcgatgaaaaaacttttgaccaGCCGTTACCG
GATGTTTTACCGGCTCACGAAACTTTAAAGTGTCAGCTTCACACTGAACC
CTCTTCTGAAGAAAGGTTGACAAATTTGAAAGATAAATTGATGCGAAAGC
GAGTTTTGGAGTCTATGTTGGATGGCGATGAAGATTCTGAAAATGACGAA
GATGTATTAAAAATTGTCTGCgaagaattgaaaatttgacggaCATGATC
AATGCATATCTTtatcaattcttttttcaaaaataatggtTCCTTTTTGG
TTTTGACGGGGACAAGTGTTGGTTAAAACCTTGTTTGTGCCAAAGCCTAA
GTCAATTTTAGTGTAGTTTTATACACATAGAATAAACTTTTCATGGAAAT
ATGGTGATGATATTTCCCCTCTTATCCTTAATGTCAGTGGCTTAACATGC
TTCTCATACATGATAAAAGGGTGATGCTTTGCAAACCTGGTAAAATGAAA
TGATTCGATTACATTATTTGACGCTTATAATCAATGATTAATGGTAGGCA
GGAGTTCATAAGTAAATTGAATTGAAGGGTTAATATCAAGAGAGCCTTTA
CTGGAAATCAGTCGTTGTTCAAAATAAGTGAAAAGGGgatgtttattttg
aaattcattgcataatttataatttattgTGCTTTTCGATTAGAATTTTA
TGTGGAAAAGATAATTTATTTACAAAACGGCGTTCACTTGCAAAAGAAAA
CTTGAATTCAATATTCGTTGACTATGTTGAAAAAGATTGATC Run BLAST on NCBI transcript from alignment at sc0000253:291516..296698+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016860 ID=TCONS_00016860|Name=TCONS_00016860|organism=Clytia hemisphaerica|type=transcript|length=5183bp|location=Sequence derived from alignment at sc0000253:291516..296698+ (Clytia hemisphaerica)
CCTTTAGCTTCGCTACCATGTGACAACATGTGGAAAGCACATTGTTTTGA
TTCTCGCAGCATTTACTCAAACTTCCTTCGCCTCCTACTACCACGGAAAA
GTTCGACTTCTTTTATTTATCTACtgcttcttcaaattttgatttttcta
gagAAGAAATGACAAGCCTTAATGTTTTACTGGAAGCTGCTAAAGCTGTT
GATATAGGTAAGATTACTTAACTATGGTTTTATTATTAGATTTTAgatct
aaaaaaagtttttgaaaagcaCATGGTTCGGGTTCGAAGCACGTGGCAAC
GTGGCGCCATTTTTTGGATACCAATATTTTATACTTTTACCTTTTTCTAG
ATTCCCcttcaatcaaaagaaaaaggaaCAGCTCTAGCAGATCAAAAAGA
GATATATTGGAAAGAACCCCTGGGTAGGAAACTAATTTTATGATGTTTGT
AGTGCTATCTctgtttctatttatttttaggcattttttgaCTTGTATAG
AGGGGTCCCCCANTCCATCTCTGTTTCTATtcatttttaggcattttttt
aCTTGTATAGAGGGGTCCCCCAGCGGTTATGTGTGAATGCATGAATGAGC
ATTTTCAATTGCATGAATGCGTGATAATTGAATAAAAGTGCGTGAATTCG
TGACTTGAAAAAACTTGCATGAACgtgaaaaaacactttttgattgcgGG
AATGCGTAAATCTGGGCTATtatgcgtgaatacgtgaattttcctttttt
tccacCGATTATGTGCAGTTCTCctaattttcgaatgtttcccCAATTTC
TTTCCGAAAATGTTCTGATTGTCTGAGAAATATAGGgtggttattgcgtg
aaactcgaggaaaatttgcgtgaatgcttGAATTTCGATGAAGTTCTAAT
GCTGCCTTGCTTTTTCTTGTATTTAACATTTCTGtctttaattatttttt
aggGGAGGAAATCGTCAAACTCATAACATCTTGGAAAAGAATAGGTATGA
ATAATTTGCCTTGTAATAAACTCAATCTATATTAACTCTGCTGAATTTAC
TGAATCTGTCATTGAGCACTAAGGATATTTTATCTCAATTTGGGGTTAGT
CTAAAAATCAGGGTAGCTAATAATTTAgctagccaattgggctaggcagt
tgggtgtttaagataaaaacggcaattattgctgtttttggaaagaaaag
ttgattttataatTGAACACATGGTAGTAGATAGCTTAGAAAGGTTAAAA
AgactttcttaaatttttgatgatggattgtagataaacccttttcatTT
AGAATTGACTAGACGATTCCCGTCGTCacaaacgccggtttagcttgcgc
atcaaaagcccttaggatgaCAAAGATGGTATTGTTGATGCTGTCTCTAA
CTTTATCTTGAAGGGGGAtttgaattacttttttattgacCACGGGAGTA
TAATGAGAAGTGTTACTTAAGATGTCTTGTAAATACCTTTTCATGCttca
attaaataaaataagAGAATGGGACTTGAAATCTTCACCATAAATATATG
AGCTTAGTAAATAATAAACCTTcaattatgagagtttcttcagGAAGTTT
GAAAGCGATTTTAATTAAATCGAAAACGGGAACTTAATTGAGTTATAGTC
AAATTAAGAGCTTCAATATATTATCAGTGAATAAGATTGGAAAAGATATA
TAAAAATGTTGCTATATTTACAAATTTCAGGTTGACATGATGCGCCTTAT
AACACAAAATAATAaatactttgatttcaaaacaatcttTTATCCACTTC
TCGATCGGAAGACCTCTGTTTTTTACCTGTGCAttgactaccttatcggc
cctttctTCCAATTAGGGCCAGTTTATCGGCATTTTTGGGCTCACTTAGT
GTAATAAGAGCCGGTGTAAAAAAAGctaagattttgaaattttaaactaA
AAGCGACATTAATTTTTTagcattatttctcaatttaaaggattttaggt
atgattggAAGACGAAAGTTATCCAtcgttttactccatatttaaaactt
cagtgaaatatttaatatatttaaaaatcagtgattttcgatagaatttt
caacagttttctACTgactaatttgaagcataagtagccatttttacaaa
tcttGGCATTATTAAcagccctaattggcgtaagcccaaaattaggctgt
ggcgtaataagggccggcgtaaaaggggctgGTGTTAAATTTGAGTCTGC
GTAAAAAGGGCAGATAAGGTATTTTAAACtgtatttttacaaaatctttG
GTAGAAAGTACCACGCCTTctaaagttcgaaaatctaagTCACTTGGTGT
TTTaaataattgacgtcagagttattttcattaaaaagtcaCTGTATGGG
CTTCTTCGATTCGAACGTCAAATCCTTTTTTGGACAGGGCTTTTATCAGA
AGGTAGTGCTAATTTACGAGCTCAATCatagataaaaatgaaatttcaaa
catAAAATTCAAACCACGACGTATCATCAACTGCTTTTTCAAAAGACAAT
AAgatttttttgtcttaaaactGCACGAAAGCCGTCTTTCATACTCGAAT
CAACCCcctggcaaaatttgagaataacagctcagctaccatcttgcgtt
acacacatttttcataaactcatttattATGACATATTGTTTTAAGAAGT
TCCTCCTCTGAGAGTGGGAATTCGCTCAGCCTACACCAAGGTTTTCTCTA
GCATCCGCAGGTAGCAAGAATAAAGCCTGGGATGCACGGGGACAATGTTG
AGTACTTGTTAAAGTCAACAAGGATATCTCAATTCCTGCTTAAGTGACCA
CTATAATTCACTAGGACAGTCTTAACATACATTAAAATAAGTGCATTAGA
ATGAGAATAGCTGTTTTCAGATGAGgttttaaatttcaacaaagAGGCAA
CTAGCCATTtcccaaaagaaattttgctatAAAGTGCTGAATTGAATATT
TTACTGAttttattgtgttttttttggaaaattctttcTTAGGAGAGCCG
AATTGAAGACCTTCttccaaaaattaaaagaaactGTACCCATCCTACAA
AACCGTCCAAAAGCTTCAAATGTCAGTGTGCTAACTGAATCAATGAAATA
TATACAGgtattactttaggcgtacaaacttttgcaagCAGAAACTTTAG
CGAATTTTTAATTGATTAATTCAAGATGAAAGACCCctaaaaatctttgt
aaattgtggctaattttgtaatttcaaaaaattttaaatcgggatttttt
caaaaaccccTGGGGAAGTGAGAGAAATAATTTGCAAAAGAGgctgattt
gcaaaattttgtccATACAAAGATCTTAGTTCTtcaattcacaaaaaaaa
atccaCATGAAAATTAACTCACTGAAGGATTTTGAACCCTACTTTCAGTA
ATTGAGCCATTACCAGGATTTCTCAGACAACCttcataatatttttaaag
CTAGTTATATAAGTAACTTGAGAGTTCCGACTAAGATTGAATTTTAACTG
ATTTTCAGATGCCAAATCGATAATCATGGAAAGGTTTTCAAGGCTTCGAG
ATGTAGCCTCACATTATATTGATTTTAAACCAAAAAATtagcaaagttga
tttcaaGCAAACACTCAGTACAATAGATTATTTTaatcaaattatcaaaa
aacTATTTATTATACATGAATTACTTAAAAAGTTTCGAAAGAGTATCAAT
GAAGGTTCCTTTATCAGCCTTTATGTGAAATATGTTTATGTTCAATAAAT
ATGTCTCATCGTGGGTATTGGCATACTAATGCTGGGCTAGCGCTCTAGTG
TGAGCGTTTCCCAAATATTGTTGACTCAACATGTTCGGGTCTTTCAGtcg
aaacaaaacctttaaattcccaaattttctattttagaccaaaatctttg
aaaatattctaaaatttgACAACATCCTTAAAAAGCTATCCACAAAATTT
TAGTATTCAGGCCAACACTAAACTAGAAAATAATAGGGTTCCAATCTTGT
TGTGATAGGAACTTTGCTAACCTGGCTTTGCTATGATTATCCTATTTTGT
TTTAGGAATTAAATGAAATTGACAAACAGCATTCACTCGAAATCACTCGT
TTAAGAAGATGTCGAATGTGTCTTGAAGAGCGaattaaaatgttaaaaga
agaaattgataAACTACCACCTGAAAATAGGCCTAAAATTATATTCAAAG
AAACTCCTATCGAACCTGAAAGGGAAAGTACAGATCATGCTAACCCTTCT
CCTACTACTTCGACTGGAGCGCCTCCTAAAAAGCCGAAAAAAGAAATGGT
GTCTATAGAAATTCAAGCAAATGAGGAAGATATTCGTGATGCATTACCTG
AATCGTATGCcgatgaaaaaacttttgaccaGCCGTTACCGGATGTTTTA
CCGGCTCACGAAACTTTAAAGTGTCAGCTTCACACTGAACCCTCTTCTGA
AGAAAGGTTGACAAATTTGAAAGATAAATTGATGCGAAAGCGAGTTTTGG
AGTCTATGTTGGATGGCGATGAAGATTCTGAAAATGACGAAGATGTATTA
AAAATTGTCTGCgaagaattgaaaatttgacggaCATGATCAATGCATAT
CTTtatcaattcttttttcaaaaataatggtTCCTTTTTGGTTTTGACGG
GGACAAGTGTTGGTTAAAACCTTGTTTGTGCCAAAGCCTAAGTCAATTTT
AGTGTAGTTTTATACACATAGAATAAACTTTTCATGGAAATATGGTGATG
ATATTTCCCCTCTTATCCTTAATGTCAGTGGCTTAACATGCTTCTCATAC
ATGATAAAAGGGTGATGCTTTGCAAACCTGGTAAAATGAAATGATTCGAT
TACATTATTTGACGCTTATAATCAATGATTAATGGTAGGCAGGAGTTCAT
AAGTAAATTGAATTGAAGGGTTAATATCAAGAGAGCCTTTACTGGAAATC
AGTCGTTGTTCAAAATAAGTGAAAAGGGgatgtttattttgaaattcatt
gcataatttataatttattgTGCTTTTCGATTAGAATTTTATGTGGAAAA
GATAATTTATTTACAAAACGGCGTTCACTTGCAAAAGAAAACTTGAATTC
AATATTCGTTGACTATGTTGAAAAAGATTGATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016860-exon-sc0000253-1491911889:291516..291722 | TCONS_00016860-exon-sc0000253-1491911889:291516..291722 | Clytia hemisphaerica | exon |
| TCONS_00016860-exon-sc0000253-1510915933:291516..291722 | TCONS_00016860-exon-sc0000253-1510915933:291516..291722 | Clytia hemisphaerica | exon |
| TCONS_00016860-exon-sc0000253-1575043694:291516..291722 | TCONS_00016860-exon-sc0000253-1575043694:291516..291722 | Clytia hemisphaerica | exon |
| TCONS_00016860-exon-sc0000253-1491911889:292468..292509 | TCONS_00016860-exon-sc0000253-1491911889:292468..292509 | Clytia hemisphaerica | exon |
| TCONS_00016860-exon-sc0000253-1510915933:292468..292509 | TCONS_00016860-exon-sc0000253-1510915933:292468..292509 | Clytia hemisphaerica | exon |
| TCONS_00016860-exon-sc0000253-1575043694:292468..292509 | TCONS_00016860-exon-sc0000253-1575043694:292468..292509 | Clytia hemisphaerica | exon |
| TCONS_00016860-exon-sc0000253-1491911889:294558..294672 | TCONS_00016860-exon-sc0000253-1491911889:294558..294672 | Clytia hemisphaerica | exon |
| TCONS_00016860-exon-sc0000253-1510915933:294558..294672 | TCONS_00016860-exon-sc0000253-1510915933:294558..294672 | Clytia hemisphaerica | exon |
| TCONS_00016860-exon-sc0000253-1575043694:294558..294672 | TCONS_00016860-exon-sc0000253-1575043694:294558..294672 | Clytia hemisphaerica | exon |
| TCONS_00016860-exon-sc0000253-1491911889:295621..296698 | TCONS_00016860-exon-sc0000253-1491911889:295621..296698 | Clytia hemisphaerica | exon |
| TCONS_00016860-exon-sc0000253-1510915933:295621..296698 | TCONS_00016860-exon-sc0000253-1510915933:295621..296698 | Clytia hemisphaerica | exon |
| TCONS_00016860-exon-sc0000253-1575043694:295621..296698 | TCONS_00016860-exon-sc0000253-1575043694:295621..296698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253 | supercontig | sc0000253:291516..296698 + |
Blast
The following BLAST results are available for this feature:
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