TCONS_00016833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016833
Unique NameTCONS_00016833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1668

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016833 ID=TCONS_00016833|Name=TCONS_00016833|organism=Clytia hemisphaerica|type=transcript|length=1668bp
TCCAGACTATCGGTCAGCTGACAATAATACTGCCGAACCACCACCGCCCA
CTGCACAATCACAATCAGGACCAACGCCATCAACCGCCCCACCGCAGTCC
TCTACAGGggaagaagaaagaaatgatTCGACTTTCGAATGTAACATTTG
TTTGGATATTGCCAGAGATGCCGTCATCAGTCTCTGTGGACATTTGTTTT
GttGGCCATGCTTGCATCAATGGATAGAGACTAGGCCTACCAGACCTGTT
TGTCCAGTATGTAAAGCGGGAATCAGCAAAGACAAAGTCATTCCCGTATA
CGGAAAAGACAATCCAGACCGGAAAGACCCAAGAGAGAAAGAGATGCCAC
CAAGACCTCAAGCTCAACGACCAGAACCTGAAACCAACTATAACATGTTC
AACAATAGCTTCTTTGGTGGCTTCGGTCCCGGCTTCGGTATGCCTGGCCA
GAATAACGGTGGATTACAATTCTCATTTGGAATTGGTGCTTTCCCCTTCA
CCTTCTTGTCATGGCAATTCGGTGCtggcaacaacaacaacaataaccAA
AGAAATGGCCAGCCACAAACACCTCAAGAAAGAGAAGAACAATTCTTATC
AAGAGCTTTTCTATGGGTGGCCATTTTCTTCAttatttggttgattttgg
cttaaaacggcaCTGCTTTTTTTGGAGATGGAAATTCTTATTTGAATTCT
GCTAGAAGCTTTTTTGCCAGTTTTTGGAGCCACCACGATTGGTCTCCATt
gggaaaaattgaaagaacCCCTACAAATGTTGCTCGAACAGCCTCATTGC
TTGAGGGGTGGATGGAACAGCTGATGATGAAAATAGTCGCTTCTTGTGAT
TTGTTATGGAGGTTGTATACATATTTCCTGTAGAAACAGCGTTTTGTATC
TCTTCTACTAATGTTATTGATAATACTTCCTTCTTGGGCCAATGGTGCAC
AAATTTCACTGTTTTAACATTCTAGATAATGatcagtgaaaaaaataaac
gaaTTACAGAATCGAGTCGGAGATGAGAAATTGTTGACAATGAACATTAT
ATGGACATTTTTATGAGAAAGCCTCATTTGTGTGTTTTCATATCAGATAT
CAATTTCAGTTTCCCAACTTTAACTATTATATAACTAACCTAGCTGTAAC
CAGCCTGAAAACCTAGCAATGTTAGGTTatccagaaaaattcttaaTCTT
TCTTATAAGTAATTTGATTGGTGAATACAACAAAGTTATGTTAAACAAAG
TGCAGGCTTTATGCGTTCGTTTTACACTGATTGGTTCCCAAATCTCAAGA
ATGCAATATTTTTATACGTATAATAACTTCATTTTagaattcttaaaatt
tttcaaatttgaaccNCACTGATTGGTTCCCAAATCTCAAGAATGCAATA
TTTTTATACGTATAATAACTTCATTTTagaattcttaaaatttttcaaat
ttgaaccTTCATGATTCATATaaaataattcttataaaaatctgtACACA
TAAACTGGGTTTCTTAAAATCTGAACTAAGTGAGGTTGCAGTAGAAAGAA
AACTTTGGATTAGAATAGGATTGATTTTAAGAAACTAttgtatttgtaaa
ttttgtttgatatctttaaatTGTACCATACCTATTCAACAATAAgaaat
acaaaatcaataaataac
Run BLAST on NCBI

protein sequence of TCONS_00016833-protein

>TCONS_00016833-protein ID=TCONS_00016833-protein|Name=TCONS_00016833-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
PDYRSADNNTAEPPPPTAQSQSGPTPSTAPPQSSTGEEERNDSTFECNIC
LDIARDAVISLCGHLFCWPCLHQWIETRPTRPVCPVCKAGISKDKVIPVY
GKDNPDRKDPREKEMPPRPQAQRPEPETNYNMFNNSFFGGFGPGFGMPGQ
NNGGLQFSFGIGAFPFTFLSWQFGAGNNNNNNQRNGQPQTPQEREEQFLS
RAFLWVAIFFIIWLILA
Run BLAST on NCBI

transcript from alignment at sc0000253:18724..23790+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016833 ID=TCONS_00016833|Name=TCONS_00016833|organism=Clytia hemisphaerica|type=transcript|length=5067bp|location=Sequence derived from alignment at sc0000253:18724..23790+ (Clytia hemisphaerica)
TCCAGACTATCGGTCAGCTGACAATAATACTGCCGAACCACCACCGCCCA
CTGCACAATCACAATCAGGACCAACGCCATCAACCGCCCCACCGCAGTCC
TCTACAGGggaagaagaaagaaatgatTCGACTTTCGAATGTAACATTTG
TTTGGATATTGCCAGAGATGCCGTCATCAGTCTCTGTGGACATTTGTTTT
GGTGAGTGAGTGATGGGTAACATCAGTTTTAGTATATTATTATGGGgcga
atgttttttttccagggTTTATGCCGGCCGACATAACTGGCACTGCCCCC
CCCCTATAGAGAATGAAGTAATATTTCGTGGCCCTTATTGATGATTTTTC
ACTAGAAGATTAGATTTCTTTAATGTTATTACTTAGGAAAACATCGTCGT
TGCAGCCTGATAACGGTTTTCCCCGACTTTGAATCTTGCGTCATATTAAT
GATATTAATCGGAGTATGTATGtcatacacgggtttcgaattaaactACG
CACgcaaaaaaatatcaagtatCAAATGTATTTATAAGATGTTGATAGAT
TCTAAAAatgcttttctatttttatttaaattcaataaaaTAAATAAGAC
TAAATACAATTGCCGTATTATTTTTTAAGTGTTTGGCTGGTATAGTGAAC
catacagtatttcaaaatggaaaaatgagctaaaattgcttgtcGTATGG
CTactttctgttttgtttacttgattttcTTTCGTGCAaattacatggga
tcaaagcaaAAGCTACGCAAAAATCTTAGTTCGAAATCCGTGTTTTTTGA
ATACCAACTGCTTCATTTTTAAtaccttttattttttttctagttGGCCA
TGCTTGCATCAAGTAAGTGCTAAAGATATTGTTTTCTTAAAGTGCCTTAT
ATGATATTTATTGAGGATGCCGCTAAAGAGAAGTCTTTCTTACCTCAATG
ACatccccttttcacagacccgttaggattttttcagccagcaGGGGTAG
AAATAACGGAcaaaaactcgatggggattgattcccatgtttttttatgg
cttgggatttgggttccattgttttcaattcAGGGAAACGGAAAAATAGC
ACAAGATTTTGCTGGGTGGATTTCTTTACTTGATTAACTTCAGTGGGTAG
AAAAGTTTGAttacgatattttggccaaatttttccagtgggtggGAACT
CCCAACGGGTCTGTGAAAAAGGGTTATGCATTTTCTGAATGAAACGACGT
TTTAGTTTTTTATATCGGTCACGGACACTTTTCACGCATTACCAAATAAT
CGCGTTTTCACTTTCTAGTGGATAGAGACTAGGCCTACCAGACCTGTTTG
TCCAGTATGTAAAGCGGGAATCAGCAAAGACAAAGTCATTCCCGTATACG
GAAAAGACAATCCAGACCGGAAAGACCCAAGGTATTGCTCTCGTTTCATT
TTTTTAGTTCCCTAGACATTTTGGAGAATTTTCCTTAAAATCTTCTAAAC
TGATATGAGTGGCTTTCTTTGTAaagtaacactttttttcaatttatttt
ttttacatatttcaccgcaataataattttatttcttctcTTTAACAAAA
GTGCTCGACGAATGCTCAGAGCTCGTTACgttaaaatgaataaaaataga
CTTTGTGTAATTTTAGGAACTTGAAGTTTCATGCCGTCCGTATGAACGAC
AATGATTAACCAAAAAACACATACTGTCAACTCTTTCTTATTCGAGTCTC
TACTATTTGGATTtttctgtaattcgaatctttctctaattcgaataaaa
ctTTTGGACCGAAGGAGTATCAACTGAATTCCCCCACTGTGCCTCTTTTT
GTAACGCCTACCATTTTCAGCGCGCGCTCGCATAATAATAAATCAGTAGT
ATTTTTGTGTACGCGCTTTTCCATCGTATTTCAGTCTCCGAAATATTATA
CCAAAATGTCTTAGGTAGGGAAAACAGGCGGGTTTCTTATAACGTTCAAA
AGTTACGAACGACTATTACTGGATGAAGctattttaatttctttcttcta
ATTTTTTATAGAGAGAAAGAGATGCCACCAAGACCTCAAGCTCAACGACC
AGAACCTGAAACCAACTATAACGTAAGAAATAAAACATAAGTATTGTGAC
AGGAATGTGTTATCTCGGATTTTGGAGTTTCTACTTTTAGAGTAATAAAC
TTAAATTCTCCTTACAATAATTGAATCACTATATTCTATCTACCGGATAT
TGTTAGCTTACATATGAAACTATTTGGCTTGCTCTCATTTTTCTGCTGGG
AAGAAATAACGTAACTTAAATTATTTGGTGTATAAAACTTCGAGGCTCGG
AATTTCCGAGTTAGAAAAATTGAGTTAGAAAACCGAGTTAGCAAAAAAAA
AACGAGTCATGACGTCATTAAACGAAAATTTTGACGGCACATCCAAAATT
TTTTGCTCGATTTTTGATTTCCAAATAAAATTTTCGAGTTAGCTAAGTCG
ATTTTTTTTGTCAAATTAAAATCTTTCGAGATTTTCGAGTTAGCTAACTC
GATTTTGTTTATCAAATTAAAATTTTCGAGTTAGCTTACTCGATTTTTTT
TCAACAAATTAAAATTTGTGCTAGAAAGAGATAAAGTTCCAGTTTACTCG
AGCGGTCAGCTTTCTTGTTTGACATTGATATATCCGGTTCTGTAGGTTCG
TACCTATCATAAGTCATTTGATTTGCTTTTCAACCAATAAAAATATATCA
GGGCGGAGCAGCGTCAGCACTATGGTTTAACTTGACTGAAAATCTTTTCA
AATTTACTGAACACACACACACAATTTATCTTTGAATTGAAACGCTTGTT
ACCGACTCACTAGGAGTATACTAGAGTATAATAGAGTTGTCAAAACATCG
GACGTACCTGGAGGTACATCAAAATACCAAAGATCCAGAATTTTCCTATC
ATAATattcttcaatttctttacaGATGTTCAACAATAGCTTCTTTGGTG
GCTTCGGTCCCGGCTTCGGTATGCCTGGCCAGAATAACGGTGGATTACAA
TTCTCATTTGGAATTGGTGCTTTCCCCTTCACCTTCTTGTCATGGGTAAA
TTGTTGTCTTTGATTTTCTGGAAGCACTACTAAGTTTACTTAGGAAAgat
ttaaaagatattttgacataatttaaaattttaggCACGATTTTCAAACG
GAAATGGTGTTCTTTGACCCGTATCCAGGGAGATATAGTGGCACTCTTCC
CTACCTTAGGTAGATAGTTATCTAAAGAGAAACCTTCAGGTCGCGTCTGA
CTGTGATTGAAGACTTAGTGGGACCGCCCTTCGACAAAGGACGTGAAAAT
CAAGTTCTTTTATGCaaacacttttattttttattcttgtttAAGCAATT
CGGTGCtggcaacaacaacaacaataaccAAAGAAGTAAGCTTCTATTAA
AACTATtggtaaaaatatatatacctTCAAACGTTTATGAAAGTAGATTT
GAATTTCCGCAATTACATCGGAGAACGCAAGGGACGTTTTAAATCTTAAG
TACTTCCATCTAATattactctcaggtacctaataaacCAACGTCCCTCG
CtagttaatttttcgaaaatttctacaaaggacattcttattccgaCCCC
TctccccgcttattgatttttgggaaatattttttgaaagttctccAAAC
CCCCTGTTTATTAGATATCCGAGAGTAATTAGTGCGGTCATACCAGAAAT
GGTAGAAAACACCTTCGTTGATGTGCTACACATAATTGTTAAACAATATT
AGTTCGTTCAATTCAGTTCTAGCAAATCgtgtgtttttttctgaaagttg
TATCATGCTCCTTCAATTGGCAGAGCTCCAATCTTGAAGCAACACTTAAC
TTTCGACATAATTATATTCCTTCGATAAATAACTTCTATTGCTTTTCTTC
CAGATGGCCAGCCACAAACACCTCAAGAAAGAGAAGAACAATTCTTATCA
AGAGCTTTTCTATGGGTGGCCATTTTCTTCAttatttggttgattttggc
ttaaaacggcaCTGCTTTTTTTGGAGATGGAAATTCTTATTTGAATTCTG
CTAGAAGCTTTTTTGCCAGTTTTTGGAGCCACCACGATTGGTCTCCATtg
ggaaaaattgaaagaacCCCTACAAATGTTGCTCGAACAGCCTCATTGCT
TGAGGGGTGGATGGAACAGCTGATGATGAAAATAGTCGCTTCTTGTGATT
TGTTATGGAGGTTGTATACATATTTCCTGTAGAAACAGCGTTTTGTATCT
CTTCTACTAATGTTATTGATAATACTTCCTTCTTGGGCCAATGGTGCACA
AATTTCACTGTTTTAACATTCTAGATAATGatcagtgaaaaaaataaacg
aaTTACAGAATCGAGTCGGAGATGAGAAATTGTTGACAATGAACATTATA
TGGACATTTTTATGAGAAAGCCTCATTTGTGTGTTTTCATATCAGATATC
AATTTCAGTTTCCCAACTTTAACTATTATATAACTAACCTAGCTGTAACC
AGCCTGAAAACCTAGCAATGTTAGGTTatccagaaaaattcttaaTCTTT
CTTATAAGTAATTTGATTGGTGAATACAACAAAGTTATGTTAAACAAAGT
GCAGGCTTTATGCGTTCGTTTTACACTGATTGGTTCCCAAATCTCAAGAA
TGCAATATTTTTATACGTATAATAACTTCATTTTagaattcttaaaattt
ttcaaatttgaaccNCACTGATTGGTTCCCAAATCTCAAGAATGCAATAT
TTTTATACGTATAATAACTTCATTTTagaattcttaaaatttttcaaatt
tgaaccTTCATGATTCATATaaaataattcttataaaaatctgtACACAT
AAACTGGGTTTCTTAAAATCTGAACTAAGTGAGGTTGCAGTAGAAAGAAA
ACTTTGGATTAGAATAGGATTGATTTTAAGAAACTAttgtatttgtaaat
tttgtttgatatctttaaatTGTACCATACCTATTCAACAATAAgaaata
caaaatcaataaataac

Coding sequence (CDS) from alignment at sc0000253:18724..23790+

>TCONS_00016833 ID=TCONS_00016833|Name=TCONS_00016833|organism=Clytia hemisphaerica|type=CDS|length=4578bp|location=Sequence derived from alignment at sc0000253:18724..23790+ (Clytia hemisphaerica)
CCAGACTATCGGTCAGCTGACAATAATACTGCCGAACCACCACCGCCCAC
TGCACAATCACAATCAGGACCAACGCCATCAACCGCCCCACCGCAGTCCT
CTACAGGggaagaagaaagaaatgatTCGACTTTCGAATGTAACATTTGT
TTGGATATTGCCAGAGATGCCGTCATCAGTCTCTGTGGACATTTGTTTTG
ttGGCCATGCTTGCATCAATGGATAGAGACTAGGCCTACCAGACCTGTTT
GTCCAGTATGTAAAGCGGGAATCAGCAAAGACAAAGTCATTCCCGTATAC
GGAAAAGACAATCCAGACCGGAAAGACCCAAGAGAGAAAGAGATGCCACC
AAGACCTCAAGCTCAACGACCAGAACCTGAAACCAACTATAACATGTTCA
ACAATAGCTTCTTTGGTGGCTTCGGTCCCGGCTTCGGTATGCCTGGCCAG
AATAACGGTGGATTACAATTCTCATTTGGAATTGGTGCTTTCCCCTTCAC
CTTCTTGTCATGGCAATTCGGTGCtggcaacaacaacaacaataaccAAA
GAAATGGCCAGCCACAAACACCTCAAGAAAGAGAAGAACAATTCTTATCA
AGAGCTTTTCTATGGGTGGCCATTTTCTTCAttatttggttgattttggc
ttaaCCAGACTATCGGTCAGCTGACAATAATACTGCCGAACCACCACCGC
CCACTGCACAATCACAATCAGGACCAACGCCATCAACCGCCCCACCGCAG
TCCTCTACAGGggaagaagaaagaaatgatTCGACTTTCGAATGTAACAT
TTGTTTGGATATTGCCAGAGATGCCGTCATCAGTCTCTGTGGACATTTGT
TTTGttGGCCATGCTTGCATCAATGGATAGAGACTAGGCCTACCAGACCT
GTTTGTCCAGTATGTAAAGCGGGAATCAGCAAAGACAAAGTCATTCCCGT
ATACGGAAAAGACAATCCAGACCGGAAAGACCCAAGAGAGAAAGAGATGC
CACCAAGACCTCAAGCTCAACGACCAGAACCTGAAACCAACTATAACATG
TTCAACAATAGCTTCTTTGGTGGCTTCGGTCCCGGCTTCGGTATGCCTGG
CCAGAATAACGGTGGATTACAATTCTCATTTGGAATTGGTGCTTTCCCCT
TCACCTTCTTGTCATGGCAATTCGGTGCtggcaacaacaacaacaataac
cAAAGAAATGGCCAGCCACAAACACCTCAAGAAAGAGAAGAACAATTCTT
ATCAAGAGCTTTTCTATGGGTGGCCATTTTCTTCAttatttggttgattt
tggcttaaCCAGACTATCGGTCAGCTGACAATAATACTGCCGAACCACCA
CCGCCCACTGCACAATCACAATCAGGACCAACGCCATCAACCGCCCCACC
GCAGTCCTCTACAGGggaagaagaaagaaatgatTCGACTTTCGAATGTA
ACATTTGTTTGGATATTGCCAGAGATGCCGTCATCAGTCTCTGTGGACAT
TTGTTTTGttGGCCATGCTTGCATCAATGGATAGAGACTAGGCCTACCAG
ACCTGTTTGTCCAGTATGTAAAGCGGGAATCAGCAAAGACAAAGTCATTC
CCGTATACGGAAAAGACAATCCAGACCGGAAAGACCCAAGAGAGAAAGAG
ATGCCACCAAGACCTCAAGCTCAACGACCAGAACCTGAAACCAACTATAA
CATGTTCAACAATAGCTTCTTTGGTGGCTTCGGTCCCGGCTTCGGTATGC
CTGGCCAGAATAACGGTGGATTACAATTCTCATTTGGAATTGGTGCTTTC
CCCTTCACCTTCTTGTCATGGCAATTCGGTGCtggcaacaacaacaacaa
taaccAAAGAAATGGCCAGCCACAAACACCTCAAGAAAGAGAAGAACAAT
TCTTATCAAGAGCTTTTCTATGGGTGGCCATTTTCTTCAttatttggttg
attttggcttaaCCAGACTATCGGTCAGCTGACAATAATACTGCCGAACC
ACCACCGCCCACTGCACAATCACAATCAGGACCAACGCCATCAACCGCCC
CACCGCAGTCCTCTACAGGggaagaagaaagaaatgatTCGACTTTCGAA
TGTAACATTTGTTTGGATATTGCCAGAGATGCCGTCATCAGTCTCTGTGG
ACATTTGTTTTGttGGCCATGCTTGCATCAATGGATAGAGACTAGGCCTA
CCAGACCTGTTTGTCCAGTATGTAAAGCGGGAATCAGCAAAGACAAAGTC
ATTCCCGTATACGGAAAAGACAATCCAGACCGGAAAGACCCAAGAGAGAA
AGAGATGCCACCAAGACCTCAAGCTCAACGACCAGAACCTGAAACCAACT
ATAACATGTTCAACAATAGCTTCTTTGGTGGCTTCGGTCCCGGCTTCGGT
ATGCCTGGCCAGAATAACGGTGGATTACAATTCTCATTTGGAATTGGTGC
TTTCCCCTTCACCTTCTTGTCATGGCAATTCGGTGCtggcaacaacaaca
acaataaccAAAGAAATGGCCAGCCACAAACACCTCAAGAAAGAGAAGAA
CAATTCTTATCAAGAGCTTTTCTATGGGTGGCCATTTTCTTCAttatttg
gttgattttggcttaaCCAGACTATCGGTCAGCTGACAATAATACTGCCG
AACCACCACCGCCCACTGCACAATCACAATCAGGACCAACGCCATCAACC
GCCCCACCGCAGTCCTCTACAGGggaagaagaaagaaatgatTCGACTTT
CGAATGTAACATTTGTTTGGATATTGCCAGAGATGCCGTCATCAGTCTCT
GTGGACATTTGTTTTGttGGCCATGCTTGCATCAATGGATAGAGACTAGG
CCTACCAGACCTGTTTGTCCAGTATGTAAAGCGGGAATCAGCAAAGACAA
AGTCATTCCCGTATACGGAAAAGACAATCCAGACCGGAAAGACCCAAGAG
AGAAAGAGATGCCACCAAGACCTCAAGCTCAACGACCAGAACCTGAAACC
AACTATAACATGTTCAACAATAGCTTCTTTGGTGGCTTCGGTCCCGGCTT
CGGTATGCCTGGCCAGAATAACGGTGGATTACAATTCTCATTTGGAATTG
GTGCTTTCCCCTTCACCTTCTTGTCATGGCAATTCGGTGCtggcaacaac
aacaacaataaccAAAGAAATGGCCAGCCACAAACACCTCAAGAAAGAGA
AGAACAATTCTTATCAAGAGCTTTTCTATGGGTGGCCATTTTCTTCAtta
tttggttgattttggcttaaCCAGACTATCGGTCAGCTGACAATAATACT
GCCGAACCACCACCGCCCACTGCACAATCACAATCAGGACCAACGCCATC
AACCGCCCCACCGCAGTCCTCTACAGGggaagaagaaagaaatgatTCGA
CTTTCGAATGTAACATTTGTTTGGATATTGCCAGAGATGCCGTCATCAGT
CTCTGTGGACATTTGTTTTGttGGCCATGCTTGCATCAATGGATAGAGAC
TAGGCCTACCAGACCTGTTTGTCCAGTATGTAAAGCGGGAATCAGCAAAG
ACAAAGTCATTCCCGTATACGGAAAAGACAATCCAGACCGGAAAGACCCA
AGAGAGAAAGAGATGCCACCAAGACCTCAAGCTCAACGACCAGAACCTGA
AACCAACTATAACATGTTCAACAATAGCTTCTTTGGTGGCTTCGGTCCCG
GCTTCGGTATGCCTGGCCAGAATAACGGTGGATTACAATTCTCATTTGGA
ATTGGTGCTTTCCCCTTCACCTTCTTGTCATGGCAATTCGGTGCtggcaa
caacaacaacaataaccAAAGAAATGGCCAGCCACAAACACCTCAAGAAA
GAGAAGAACAATTCTTATCAAGAGCTTTTCTATGGGTGGCCATTTTCTTC
AttatttggttgattttggcttaaCCAGACTATCGGTCAGCTGACAATAA
TACTGCCGAACCACCACCGCCCACTGCACAATCACAATCAGGACCAACGC
CATCAACCGCCCCACCGCAGTCCTCTACAGGggaagaagaaagaaatgat
TCGACTTTCGAATGTAACATTTGTTTGGATATTGCCAGAGATGCCGTCAT
CAGTCTCTGTGGACATTTGTTTTGttGGCCATGCTTGCATCAATGGATAG
AGACTAGGCCTACCAGACCTGTTTGTCCAGTATGTAAAGCGGGAATCAGC
AAAGACAAAGTCATTCCCGTATACGGAAAAGACAATCCAGACCGGAAAGA
CCCAAGAGAGAAAGAGATGCCACCAAGACCTCAAGCTCAACGACCAGAAC
CTGAAACCAACTATAACATGTTCAACAATAGCTTCTTTGGTGGCTTCGGT
CCCGGCTTCGGTATGCCTGGCCAGAATAACGGTGGATTACAATTCTCATT
TGGAATTGGTGCTTTCCCCTTCACCTTCTTGTCATGGCAATTCGGTGCtg
gcaacaacaacaacaataaccAAAGAAATGGCCAGCCACAAACACCTCAA
GAAAGAGAAGAACAATTCTTATCAAGAGCTTTTCTATGGGTGGCCATTTT
CTTCAttatttggttgattttggcttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009430XLOC_009430Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016833-proteinTCONS_00016833-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016833-exon-sc0000253-1491911889:18724..18924TCONS_00016833-exon-sc0000253-1491911889:18724..18924Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1510915933:18724..18924TCONS_00016833-exon-sc0000253-1510915933:18724..18924Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1575043694:18724..18924TCONS_00016833-exon-sc0000253-1575043694:18724..18924Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1491911889:19567..19585TCONS_00016833-exon-sc0000253-1491911889:19567..19585Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1510915933:19567..19585TCONS_00016833-exon-sc0000253-1510915933:19567..19585Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1575043694:19567..19585TCONS_00016833-exon-sc0000253-1575043694:19567..19585Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1491911889:20042..20154TCONS_00016833-exon-sc0000253-1491911889:20042..20154Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1510915933:20042..20154TCONS_00016833-exon-sc0000253-1510915933:20042..20154Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1575043694:20042..20154TCONS_00016833-exon-sc0000253-1575043694:20042..20154Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1491911889:20785..20845TCONS_00016833-exon-sc0000253-1491911889:20785..20845Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1510915933:20785..20845TCONS_00016833-exon-sc0000253-1510915933:20785..20845Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1575043694:20785..20845TCONS_00016833-exon-sc0000253-1575043694:20785..20845Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1491911889:21699..21818TCONS_00016833-exon-sc0000253-1491911889:21699..21818Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1510915933:21699..21818TCONS_00016833-exon-sc0000253-1510915933:21699..21818Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1575043694:21699..21818TCONS_00016833-exon-sc0000253-1575043694:21699..21818Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1491911889:22119..22158TCONS_00016833-exon-sc0000253-1491911889:22119..22158Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1510915933:22119..22158TCONS_00016833-exon-sc0000253-1510915933:22119..22158Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1575043694:22119..22158TCONS_00016833-exon-sc0000253-1575043694:22119..22158Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1491911889:22677..23790TCONS_00016833-exon-sc0000253-1491911889:22677..23790Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1510915933:22677..23790TCONS_00016833-exon-sc0000253-1510915933:22677..23790Clytia hemisphaericaexon
TCONS_00016833-exon-sc0000253-1575043694:22677..23790TCONS_00016833-exon-sc0000253-1575043694:22677..23790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000253supercontigsc0000253:18724..23790 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.77522	8.93957	7.07582	7.21888	17.8389	11.298	20.4771	22.3313	19.6304	20.6097	19.4131	14.1703	14.846	15.3673	10.6181	11.5134	18.236	16.4836	13.4415	14.6065	21.7002	22.6027	18.1225	20.4556	17.3354	20.3645	14.1707	9.96359	11.6054	11.8516
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Blast
[Close]
BLAST of TCONS_00016833 vs. Swiss-Prot (Human)
Match: RN185 (E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 3.337e-39
Identity = 86/165 (52.12%), Postives = 98/165 (59.39%), Query Frame = 2 
Query:  110 EEERNDSTFECNICLDIARDAVISLCGHLFCWPCLHQWIETRPTRPVCPVCKAGISKDKVIPVYGKDNPDRKDPREKEMXXXXXXXXXXXXTNYXXXXXXXXXXXXXXXXXXXXXXXXLQFSFGIGAFPFTFLSWQFGAGXXXXXXQRNGQPQTPQEREEQFLSR 604
            E    DSTFECNICLD A+DAVISLCGHLFCWPCLHQW+ETRP R VCPVCKAGIS+DKVIP+YG+ +  ++DPREK              T               GF   G  +GG Q SFGIGAFPF   +  F   +          P TPQ  +EQFLSR
Sbjct:   29 ESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREK--------------TPPRPQGQRPEPENRGGFQGFGFGDGGFQMSFGIGAFPFGIFATAFNINDGRPPP---AVPGTPQYVDEQFLSR 176
The following BLAST results are available for this feature:
BLAST of TCONS_00016833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1853.337e-3952.12E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens... [more]
back to top