TCONS_00016821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016821
Unique NameTCONS_00016821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016821 ID=TCONS_00016821|Name=TCONS_00016821|organism=Clytia hemisphaerica|type=transcript|length=777bp
TCCTCGTTTGCGTATTCAGCACCAACTTCCTTTCCATCAACAATGATGAG
GGTGTTGGTACATCTCAAGACGATATTGCAATCATGCTGCTCAAGATAAG
GAACATCCGTGTTTCGgttgtttgataaaaatatgaCCGTAGGCCACTCA
AACCCTGAAACAAAGTCCGGAATCGTAATCAAAACTTTACCCTCCTTCAA
AGTTTGAATTGGATCCAGATTTTCATCAACAGGAAAAACAACACTCTCCA
GTTGACTGTAAAGTTCAGTTTCCTCATCACGAATATACCGCAATGGGACA
TCACATAAACTATTAGCGACCAGGAGAATGCCTCCAGAAGTTATTTTTCG
GGCGTGGACAATGGCGTCTTCGATAGTTTTCATATAGACTGGTGGAACAC
CACGAGGGAAGTTCGGTGGAGTGGGTGCTAGGCCTTCTCTGTATCGAAAC
GGTTTCGTCTCAACGATTGATTCAGACTTCTGTACAATTTCCACGGCGTT
TCGCAAATTATAAGTCAACTGCAGGAACTCAAAGTCTTCACTAAGgtcgt
tttgtttttgatacatTTGGCTGGTTGCATCGGGTACAATCCAAAGGAAC
GAAAGAGAATCGGCAATGTCTTTGATCTCTTTCATATCAATTTGCCATTC
ATCTAAGAACAGCGCTTTGACTTTTCCTGATGTTATCGTCTGCTTCAAGC
CAATTTGTGATGTCTTAAAAAGGACATAGAAGTGTCagcattaaaaaaat
taataaaataagtAGAACGATTTTGAG
Run BLAST on NCBI

protein sequence of TCONS_00016821-protein

>TCONS_00016821-protein ID=TCONS_00016821-protein|Name=TCONS_00016821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MKEIKDIADSLSFLWIVPDATSQMYQKQNDLSEDFEFLQLTYNLRNAVEI
VQKSESIVETKPFRYREGLAPTPPNFPRGVPPVYMKTIEDAIVHARKITS
GGILLVANSLCDVPLRYIRDEETELYSQLESVVFPVDENLDPIQTLKEGK
VLITIPDFVSGFEWPTVIFLSNNRNTDVPYLEQHDCNIVLRCTNTLIIVD
GKEVGAEYANE
Run BLAST on NCBI

transcript from alignment at sc0000252:247220..247996

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016821 ID=TCONS_00016821|Name=TCONS_00016821|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at sc0000252:247220..247996 (Clytia hemisphaerica)
CTCAAAATCGTTCTacttattttattaatttttttaatgctGACACTTCT
ATGTCCTTTTTAAGACATCACAAATTGGCTTGAAGCAGACGATAACATCA
GGAAAAGTCAAAGCGCTGTTCTTAGATGAATGGCAAATTGATATGAAAGA
GATCAAAGACATTGCCGATTCTCTTTCGTTCCTTTGGATTGTACCCGATG
CAACCAGCCAAatgtatcaaaaacaaaacgacCTTAGTGAAGACTTTGAG
TTCCTGCAGTTGACTTATAATTTGCGAAACGCCGTGGAAATTGTACAGAA
GTCTGAATCAATCGTTGAGACGAAACCGTTTCGATACAGAGAAGGCCTAG
CACCCACTCCACCGAACTTCCCTCGTGGTGTTCCACCAGTCTATATGAAA
ACTATCGAAGACGCCATTGTCCACGCCCGAAAAATAACTTCTGGAGGCAT
TCTCCTGGTCGCTAATAGTTTATGTGATGTCCCATTGCGGTATATTCGTG
ATGAGGAAACTGAACTTTACAGTCAACTGGAGAGTGTTGTTTTTCCTGTT
GATGAAAATCTGGATCCAATTCAAACTTTGAAGGAGGGTAAAGTTTTGAT
TACGATTCCGGACTTTGTTTCAGGGTTTGAGTGGCCTACGGtcatatttt
tatcaaacaacCGAAACACGGATGTTCCTTATCTTGAGCAGCATGATTGC
AATATCGTCTTGAGATGTACCAACACCCTCATCATTGTTGATGGAAAGGA
AGTTGGTGCTGAATACGCAAACGAGGA

Coding sequence (CDS) from alignment at sc0000252:247220..247996

>TCONS_00016821 ID=TCONS_00016821|Name=TCONS_00016821|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at sc0000252:247220..247996 (Clytia hemisphaerica)
ATGAAAGAGATCAAAGACATTGCCGATTCTCTTTCGTTCCTTTGGATTGT
ACCCGATGCAACCAGCCAAatgtatcaaaaacaaaacgacCTTAGTGAAG
ACTTTGAGTTCCTGCAGTTGACTTATAATTTGCGAAACGCCGTGGAAATT
GTACAGAAGTCTGAATCAATCGTTGAGACGAAACCGTTTCGATACAGAGA
AGGCCTAGCACCCACTCCACCGAACTTCCCTCGTGGTGTTCCACCAGTCT
ATATGAAAACTATCGAAGACGCCATTGTCCACGCCCGAAAAATAACTTCT
GGAGGCATTCTCCTGGTCGCTAATAGTTTATGTGATGTCCCATTGCGGTA
TATTCGTGATGAGGAAACTGAACTTTACAGTCAACTGGAGAGTGTTGTTT
TTCCTGTTGATGAAAATCTGGATCCAATTCAAACTTTGAAGGAGGGTAAA
GTTTTGATTACGATTCCGGACTTTGTTTCAGGGTTTGAGTGGCCTACGGt
catatttttatcaaacaacCGAAACACGGATGTTCCTTATCTTGAGCAGC
ATGATTGCAATATCGTCTTGAGATGTACCAACACCCTCATCATTGTTGAT
GGAAAGGAAGTTGGTGCTGAATACGCAAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009418XLOC_009418Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016821-proteinTCONS_00016821-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016821-exon-sc0000252-1491911889:247220..247996TCONS_00016821-exon-sc0000252-1491911889:247220..247996Clytia hemisphaericaexon
TCONS_00016821-exon-sc0000252-1510915933:247220..247996TCONS_00016821-exon-sc0000252-1510915933:247220..247996Clytia hemisphaericaexon
TCONS_00016821-exon-sc0000252-1575043694:247220..247996TCONS_00016821-exon-sc0000252-1575043694:247220..247996Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000252supercontigsc0000252:247220..247996 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0624608	0	0	0.0691898	1.17925	0.798734	2.24508	2.4809	0.725434	1.43432	0.651492	0.540781	7.1324	3.44635	3.1884	5.50622	1.24015	1.71824	3.8825	9.51845	0.241563	0.265108	0.214849	0.325548	2.72999	2.66778	0.513877	0.731231	0.20798	0.353164
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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