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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016808 ID=TCONS_00016808|Name=TCONS_00016808|organism=Clytia hemisphaerica|type=transcript|length=4566bpRun BLAST on NCBI transcript from alignment at sc0000252:157810..176155- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016808 ID=TCONS_00016808|Name=TCONS_00016808|organism=Clytia hemisphaerica|type=transcript|length=18346bp|location=Sequence derived from alignment at sc0000252:157810..176155- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016808 vs. Swiss-Prot (Human)
Match: EFCB5 (EF-hand calcium-binding domain-containing protein 5 OS=Homo sapiens GN=EFCAB5 PE=1 SV=3) HSP 1 Score: 369.392 bits (947), Expect = 3.902e-105 Identity = 231/693 (33.33%), Postives = 366/693 (52.81%), Query Frame = 1
Query: 1738 FNKERMSQDQFVNLLINFVGEDPMNSAVENLVRFLRNGYVXXXXXXXXXXXXXXHKATEIRRKIQIDQLFELWDIDASGFLETDEVEMVLARWRE-------EEISDHVNREACHTFEETFSKISRGMFKRLIEDVCSKFK--DDDVFDRLIQFITKSVQRSFEEQKRGEFRKRWLNNIDFSARTSGAMVDPVFKTVFSVIEHDSFRHGKEKKICAYVAFLEPNESKLTNVKGTHILRYIACTTSDNDYVLNRVLHRGMRCIAFNATDTGKPIHVPRVINHGGVHLWNPNRRDDKIEGSFICLPLKDHEKVVLGMLGIDTMADPHEKAIFVTHEISFYQGVAKALSQAIQFIDMRQKTIKISESAVSWILRRSPHVHEVILYLVEPALKVTEGSVLRKMATLSHNSITK-PDIPPRLERRDNLFRDYLFKCVDTSETLTADAYGERHFAFPLRDAEGMVVSIVDISIGKLRTLPPHELKEIHRMLKLLEMAQKEMTMEVAGE-NKTIVLEVEKEHQNMRIDVLFDRIMLQDLRANVGRLDARAFAEIKSY-------KDPP------------KIIHDILKAVLILYFQSKAXXXXXXXXXXHTLDPIAEEQQMERLEEWTAAKQFVNSDLVKWITDFDPTAGSGTTKGGEKLSQLLGDIMPGAVTKHGSLPAQYMFNWAFVCLSLIEHTNKM 3726
FN + QFV LL FVGED S E L F + GYVETE+E+ LE+ A ++R+++ ++ +F+ WD D SGFL+ EV+ +L ++E ++ H+ H E ++S F+ IE V S+ + +D V + +++F+ +++RS E R R++WL+ I +A TSG ++PV+ F + D+ HG KKI A+++ L E+ L KG +LR +ACT D +VLNRVL+R M+ I+F D GKPIHVP+V HG + WN +R GSF+ LPL+D + G+L +DT+ DPHE IF+ HEI FYQGVA S A ++ R+ + I + + W+ + + + Y VEP+ VLR M +T+ PP + R+ +FRD+LFKC D+SE + A A GE H PLR+ G + ++D +IG+ R L E K++ +M+K++++A E+ E +GE K +LE+E + R +LF RIML +L+ ++ L++ F + Y + P K++ DILKAV IL+F + E + W K +VN LV I FDPTA + + + + D V K G++ +++++W +C +L++ T ++
Sbjct: 809 FNGVSFNLLQFVQLLETFVGEDAPLSVSETLTSFFKEGYVETEQEKMNALEQFSQNAFQVRQRLLLEAIFQKWDSDGSGFLDLKEVDELLYTYKEGMEKESMKKAKLHIQFPKPHPGHEV--RLSSKQFQNYIELVVSELRGNEDQVLESVVEFLMNALERSHIESLRNSARRKWLHQIQCAAETSGVSLEPVYSETFKALMQDAEAHGN-KKISAHISLL--EENLLLPEKGNVLLRNVACTLDDAQFVLNRVLYRDMKGISFTVVDEGKPIHVPQVQYHGNIFFWNQSRNKHDYNGSFLALPLQDAYMRIFGVLAVDTLRDPHEINIFLPHEIRFYQGVANVFSTAYHYVHSREHILHIVITGIGWLYDVTSSITSITTYFVEPSPAQDSDYVLRNMMVTGQLGLTEIHKNPPTIHRKSCIFRDFLFKCTDSSEVVLASACGETHIVVPLRERTGEALGVLDFNIGQNRMLLCQEYKDLQKMMKVVQVACYEILGEFSGEIKKKYILEIENVREVQRAGILFFRIMLLELQESIQLLNSMEFVSLLLYDHTLVTEPNSPQDSKSMELEANVKLVRDILKAV-ILFFHPELEFSSD-------------------FGSWDKCKFYVNKYLVNNICAFDPTA-KHVEVNVQLIDEYIRDHSRTEVWKFGNVVIEHLYHWIHICSALMKITKQL 1475 HSP 2 Score: 134.035 bits (336), Expect = 2.894e-31 Identity = 95/301 (31.56%), Postives = 159/301 (52.82%), Query Frame = 1
Query: 394 PFEYLAQDWFEEKKVNTDSRAYLLENLIPTLIMGVXXXXXXXXXXXXXXMAELTPDFNPINFLAQFLMRNNPKYSNFVEASPYAKTIRNMLNSLKERAFDMNESNRIXXXXXXXXXXXXXXXXXXXLIALLRRGRPDAIQEMFVLWTGDRSAVISLSLVQSSIRSFEDYIVMLPADIQKDSRDALKIVEIDITGKL---INIREFVEYIMKRASKLGSAAFNKLMEHMSDLAKEYRKSVSLENIRNIFSNLFTAVDFSDSGYLDRQRILSLLCMYYDSLKHDPVQFSLKDPRMWPVSELSE 1287
P + LA++WF + ++ AYLL+ L+PTL+ GVE +L + EK+K++ A+ F+PIN+L ++L+RNNP Y S Y + ++ + LK D NR+++M+ K+ +++ E ++I + R A+QE F W D +I S++Q+ ++ F D + ++DIT +N EF EYI L S F +L++H+ A E+R+ + + R +F+ LF D G+LDRQR L+LL ++YD ++ L++PR WP E E
Sbjct: 152 PRDNLAKEWFNTDSMTLNNTAYLLDKLLPTLVPGVENMLTQVEKKKVLTEADTPSKFDPINYLGEYLIRNNPNYIKDPGMSGYQRLMKEVTEDLKIYVPDTI-CNRVSKMKENVKQNRKQRESIDKIIVKVANTRKQALQEQFDEWILDPKGMIPKSVIQNVLQEFFQ---------NPDFKLGSHCKQLDITDSTEPRLNKMEFTEYISSHIKDLKSEMFEELLKHLCHSADEFREVIKADMRRQMFAELFLHCDHGKVGFLDRQRTLALLELFYDH-SSQMLRSLLRNPRQWPFIEFEE 441 The following BLAST results are available for this feature:
BLAST of TCONS_00016808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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