TCONS_00016774 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016774
Unique NameTCONS_00016774
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length444

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016774 ID=TCONS_00016774|Name=TCONS_00016774|organism=Clytia hemisphaerica|type=transcript|length=444bp
GTCTTTATCAAAGCAGAGAAGAAGAGCTAGGAATGCTGATTCCAGCTAAA
TATTATACTATATATTTCAGGTACCTTACCCGTTGTAACCCTCTCCGCAT
CAGCAGGGTCATAGCATAGTTATAAAAATGACAGAGTGCTTTCCTCCGGA
CGAGGAGGAAAAAAATAGATCACAGTAGCAAAAATAACTCAAAAGTCCTA
ACTAAAATTTTGTCCTATTTCGACGatacaaaaaaaatacaaacacaata
TATATAATTAACGAGTGTCCTGGTAGATTTTTCCATGGATGTACAACTTT
GATTTGAAACTGATGTTGAAGTTGACAGGTAATAATCCTGGTTGACTCTG
TTTGACTTGACAGTTCACCTTTTGCTTTTTTTGGAATGACcggtttttca
aaacaaaaagagaagaaaaagattGAAGATAAATTTCATAAGAG
Run BLAST on NCBI

transcript from alignment at sc0000248:295398..295841

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016774 ID=TCONS_00016774|Name=TCONS_00016774|organism=Clytia hemisphaerica|type=transcript|length=444bp|location=Sequence derived from alignment at sc0000248:295398..295841 (Clytia hemisphaerica)
CTCTTATGAAATTTATCTTCaatctttttcttctctttttgttttgaaaa
accgGTCATTCCAAAAAAAGCAAAAGGTGAACTGTCAAGTCAAACAGAGT
CAACCAGGATTATTACCTGTCAACTTCAACATCAGTTTCAAATCAAAGTT
GTACATCCATGGAAAAATCTACCAGGACACTCGTTAATTATATAtattgt
gtttgtattttttttgtatCGTCGAAATAGGACAAAATTTTAGTTAGGAC
TTTTGAGTTATTTTTGCTACTGTGATCTATTTTTTTCCTCCTCGTCCGGA
GGAAAGCACTCTGTCATTTTTATAACTATGCTATGACCCTGCTGATGCGG
AGAGGGTTACAACGGGTAAGGTACCTGAAATATATAGTATAATATTTAGC
TGGAATCAGCATTCCTAGCTCTTCTTCTCTGCTTTGATAAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009387XLOC_009387Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016774-exon-sc0000248-1491911889:295398..295841TCONS_00016774-exon-sc0000248-1491911889:295398..295841Clytia hemisphaericaexon
TCONS_00016774-exon-sc0000248-1510915933:295398..295841TCONS_00016774-exon-sc0000248-1510915933:295398..295841Clytia hemisphaericaexon
TCONS_00016774-exon-sc0000248-1575043694:295398..295841TCONS_00016774-exon-sc0000248-1575043694:295398..295841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:295398..295841 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.147219	0.854675	0	0.407181	0.16088	0	0.181709	0	0	0.458856	0.301634	0.401619	0	0	0.0919963	0.339996	0	0.320967	0	0.291931	0.213591	0.173098	0	0.972533	0.289321	1.03504	1.10463	1.34051	0.853606
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016774 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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