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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016772 ID=TCONS_00016772|Name=TCONS_00016772|organism=Clytia hemisphaerica|type=transcript|length=1885bp
GCACCGAAAAGGGACAATTTAATTTCGTTGGATACACCGATTCTGTTCGA
AAGAGTATGAACCTACAAACGTATATAATCGCATCAGCCCTTGTTAATAT
TCTAAGTATTTTTATACGGGGTTGCCCAGGAATTCTTTCATTCTTCTTGT
TTAAACTCTGTTGCTTATACAGTAATCCGAAAGTTGGCAGATCGagtaac
attttcaaatttggaccatcAGTATTATTTGGTCTACAAACGATGCTTCT
GATATCCTATTTGCTACTTTGCCTTTACGATAAATGGTATTTCAGTATTT
CCATAACAGTCTATCTATCGATGTACTTATTATGTGCTCTTTTCACTCGG
AAATGGTTCAAAAAGATTCCTATCATTTGTCTTGGTAGAAGACATTGTTG
TGCATACGGAGAATCTAAACAAAGCTTGAAGGAAATACTGCTGCGCATTG
ATCTTTTCGTTCCTATTCGACAAGAGTTGGTAAGCCTACAGAATATTTGT
ATGAGAAGAGGTGGTGAAGTCATACGTTATTCtttagaaagaaaatttaa
tgaaattcatCCTGTCAGTGTTTTGTTCACCGGTAGTGCATTCGAAAATT
TTGGCTTACCAACTTCATCTGATTGGATAAAAGACTTTGACACTATACCT
AATGGTTATCCCTTGCTAACGGACTTCGACTTAATGTTGTGCTTCGATAA
TGTATTTGCATCTATGGGAAATGATCAAAATGCACATTTTCAGATACACG
ATTCTACACAACAAGGGTTTGTAATGTTGTCTACCAATAATTATGGAGTG
AACAacctttctaagggaatttttgaaaacttattgGTTTCAATCGAAGT
GAACAACACATCCAAGGAAGTTTTAAGTGCAAAGAAAGTTAAGAAGTTGA
TATATAGTCTTATTGCTGATATTCCCCTTGATTCCTTCCAAGGGGGCCAG
GAAGATGTTGCAACAGGAGTATCAAAAATCAATATGGCCAAACTCTCAAA
AGGTGGGCCTGCCGTTCAACTACAAATAGGTTCCACTAAATTGCTGATTT
GTTGCTTTGATAGTTGCCGTAATTTAGAACATGATGGGTTTTTAGCTGAC
TTTGCTTTTGGTATTAAAGCAATCTGGCCAAGTGCGAGTGACTGGAAAGA
TCGTACTGGCCGTTTTTGGCCAAGTCCTGAAGAAGTTAATAGGATTGTAG
AAGGAGGGAGTCATTTTGTTGCCAAATCTCAAACAGATGATAACATTGGA
ATAACTTGGAGATATTCTTTCTCAAAAGCTGAAGTCGAACTCTCCAAATT
GGTCAATCCAGTTGCACGTAAATGTTATTTGGCACTGAAAGTTATTTTGA
AAGATCATTTACAACTGATTGCACCTTGGTTGAAATCGTACCATTTGAAA
ACCATTCTTTATTGGACATTGGAAAAAACATCAACAGACGTATGGAGAAG
CGATGATATTGAAGCCTGCTTTAACATTATTTTAGAAAACCTTAAAACGT
CATTAAATAGTGGTGTTTGTCAACATTTCTGGATATCCACTATTGATTTA
TTCGATACAAAATCAATCAACCAGGGATGTCAGTTTCGTAAAATATCCAC
ATTGATAAATAAAATCTTGGCAAACCcagaaatatattttaatatttttg
atccAAAGAtagaaaaatctttgaattaTGAAAATCAAATCACTCGAAGC
TATGGAGATGAGGAATTAGTTGAAATTGGTTATGTAAATTATGCACGCGA
ACCAACTGGTTCTGTAAATTACTCATATGAGTCAGTGGATATTGGAGATC
AAATTGAACTATTGTAAACTATCGTTGTGTAAATAATTTATCTAAAAACA
TAACAAAGCTCTTATCTTACAAAAATATTCTGcta Run BLAST on NCBI protein sequence of TCONS_00016772-protein >TCONS_00016772-protein ID=TCONS_00016772-protein|Name=TCONS_00016772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=604bp
TEKGQFNFVGYTDSVRKSMNLQTYIIASALVNILSIFIRGCPGILSFFLF
KLCCLYSNPKVGRSSNIFKFGPSVLFGLQTMLLISYLLLCLYDKWYFSIS
ITVYLSMYLLCALFTRKWFKKIPIICLGRRHCCAYGESKQSLKEILLRID
LFVPIRQELVSLQNICMRRGGEVIRYSLERKFNEIHPVSVLFTGSAFENF
GLPTSSDWIKDFDTIPNGYPLLTDFDLMLCFDNVFASMGNDQNAHFQIHD
STQQGFVMLSTNNYGVNNLSKGIFENLLVSIEVNNTSKEVLSAKKVKKLI
YSLIADIPLDSFQGGQEDVATGVSKINMAKLSKGGPAVQLQIGSTKLLIC
CFDSCRNLEHDGFLADFAFGIKAIWPSASDWKDRTGRFWPSPEEVNRIVE
GGSHFVAKSQTDDNIGITWRYSFSKAEVELSKLVNPVARKCYLALKVILK
DHLQLIAPWLKSYHLKTILYWTLEKTSTDVWRSDDIEACFNIILENLKTS
LNSGVCQHFWISTIDLFDTKSINQGCQFRKISTLINKILANPEIYFNIFD
PKIEKSLNYENQITRSYGDEELVEIGYVNYAREPTGSVNYSYESVDIGDQ
IELL Run BLAST on NCBI transcript from alignment at sc0000248:265604..267488 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016772 ID=TCONS_00016772|Name=TCONS_00016772|organism=Clytia hemisphaerica|type=transcript|length=1885bp|location=Sequence derived from alignment at sc0000248:265604..267488 (Clytia hemisphaerica)
tagCAGAATATTTTTGTAAGATAAGAGCTTTGTTATGTTTTTAGATAAAT
TATTTACACAACGATAGTTTACAATAGTTCAATTTGATCTCCAATATCCA
CTGACTCATATGAGTAATTTACAGAACCAGTTGGTTCGCGTGCATAATTT
ACATAACCAATTTCAACTAATTCCTCATCTCCATAGCTTCGAGTGATTTG
ATTTTCAtaattcaaagatttttctaTCTTTggatcaaaaatattaaaat
atatttctgGGTTTGCCAAGATTTTATTTATCAATGTGGATATTTTACGA
AACTGACATCCCTGGTTGATTGATTTTGTATCGAATAAATCAATAGTGGA
TATCCAGAAATGTTGACAAACACCACTATTTAATGACGTTTTAAGGTTTT
CTAAAATAATGTTAAAGCAGGCTTCAATATCATCGCTTCTCCATACGTCT
GTTGATGTTTTTTCCAATGTCCAATAAAGAATGGTTTTCAAATGGTACGA
TTTCAACCAAGGTGCAATCAGTTGTAAATGATCTTTCAAAATAACTTTCA
GTGCCAAATAACATTTACGTGCAACTGGATTGACCAATTTGGAGAGTTCG
ACTTCAGCTTTTGAGAAAGAATATCTCCAAGTTATTCCAATGTTATCATC
TGTTTGAGATTTGGCAACAAAATGACTCCCTCCTTCTACAATCCTATTAA
CTTCTTCAGGACTTGGCCAAAAACGGCCAGTACGATCTTTCCAGTCACTC
GCACTTGGCCAGATTGCTTTAATACCAAAAGCAAAGTCAGCTAAAAACCC
ATCATGTTCTAAATTACGGCAACTATCAAAGCAACAAATCAGCAATTTAG
TGGAACCTATTTGTAGTTGAACGGCAGGCCCACCTTTTGAGAGTTTGGCC
ATATTGATTTTTGATACTCCTGTTGCAACATCTTCCTGGCCCCCTTGGAA
GGAATCAAGGGGAATATCAGCAATAAGACTATATATCAACTTCTTAACTT
TCTTTGCACTTAAAACTTCCTTGGATGTGTTGTTCACTTCGATTGAAACc
aataagttttcaaaaattcccttagaaaggtTGTTCACTCCATAATTATT
GGTAGACAACATTACAAACCCTTGTTGTGTAGAATCGTGTATCTGAAAAT
GTGCATTTTGATCATTTCCCATAGATGCAAATACATTATCGAAGCACAAC
ATTAAGTCGAAGTCCGTTAGCAAGGGATAACCATTAGGTATAGTGTCAAA
GTCTTTTATCCAATCAGATGAAGTTGGTAAGCCAAAATTTTCGAATGCAC
TACCGGTGAACAAAACACTGACAGGatgaatttcattaaattttctttct
aaaGAATAACGTATGACTTCACCACCTCTTCTCATACAAATATTCTGTAG
GCTTACCAACTCTTGTCGAATAGGAACGAAAAGATCAATGCGCAGCAGTA
TTTCCTTCAAGCTTTGTTTAGATTCTCCGTATGCACAACAATGTCTTCTA
CCAAGACAAATGATAGGAATCTTTTTGAACCATTTCCGAGTGAAAAGAGC
ACATAATAAGTACATCGATAGATAGACTGTTATGGAAATACTGAAATACC
ATTTATCGTAAAGGCAAAGTAGCAAATAGGATATCAGAAGCATCGTTTGT
AGACCAAATAATACTgatggtccaaatttgaaaatgttactCGATCTGCC
AACTTTCGGATTACTGTATAAGCAACAGAGTTTAAACAAGAAGAATGAAA
GAATTCCTGGGCAACCCCGTATAAAAATACTTAGAATATTAACAAGGGCT
GATGCGATTATATACGTTTGTAGGTTCATACTCTTTCGAACAGAATCGGT
GTATCCAACGAAATTAAATTGTCCCTTTTCGGTGC Coding sequence (CDS) from alignment at sc0000248:265604..267488 >TCONS_00016772 ID=TCONS_00016772|Name=TCONS_00016772|organism=Clytia hemisphaerica|type=CDS|length=1815bp|location=Sequence derived from alignment at sc0000248:265604..267488 (Clytia hemisphaerica)
TTACAATAGTTCAATTTGATCTCCAATATCCACTGACTCATATGAGTAAT
TTACAGAACCAGTTGGTTCGCGTGCATAATTTACATAACCAATTTCAACT
AATTCCTCATCTCCATAGCTTCGAGTGATTTGATTTTCAtaattcaaaga
tttttctaTCTTTggatcaaaaatattaaaatatatttctgGGTTTGCCA
AGATTTTATTTATCAATGTGGATATTTTACGAAACTGACATCCCTGGTTG
ATTGATTTTGTATCGAATAAATCAATAGTGGATATCCAGAAATGTTGACA
AACACCACTATTTAATGACGTTTTAAGGTTTTCTAAAATAATGTTAAAGC
AGGCTTCAATATCATCGCTTCTCCATACGTCTGTTGATGTTTTTTCCAAT
GTCCAATAAAGAATGGTTTTCAAATGGTACGATTTCAACCAAGGTGCAAT
CAGTTGTAAATGATCTTTCAAAATAACTTTCAGTGCCAAATAACATTTAC
GTGCAACTGGATTGACCAATTTGGAGAGTTCGACTTCAGCTTTTGAGAAA
GAATATCTCCAAGTTATTCCAATGTTATCATCTGTTTGAGATTTGGCAAC
AAAATGACTCCCTCCTTCTACAATCCTATTAACTTCTTCAGGACTTGGCC
AAAAACGGCCAGTACGATCTTTCCAGTCACTCGCACTTGGCCAGATTGCT
TTAATACCAAAAGCAAAGTCAGCTAAAAACCCATCATGTTCTAAATTACG
GCAACTATCAAAGCAACAAATCAGCAATTTAGTGGAACCTATTTGTAGTT
GAACGGCAGGCCCACCTTTTGAGAGTTTGGCCATATTGATTTTTGATACT
CCTGTTGCAACATCTTCCTGGCCCCCTTGGAAGGAATCAAGGGGAATATC
AGCAATAAGACTATATATCAACTTCTTAACTTTCTTTGCACTTAAAACTT
CCTTGGATGTGTTGTTCACTTCGATTGAAACcaataagttttcaaaaatt
cccttagaaaggtTGTTCACTCCATAATTATTGGTAGACAACATTACAAA
CCCTTGTTGTGTAGAATCGTGTATCTGAAAATGTGCATTTTGATCATTTC
CCATAGATGCAAATACATTATCGAAGCACAACATTAAGTCGAAGTCCGTT
AGCAAGGGATAACCATTAGGTATAGTGTCAAAGTCTTTTATCCAATCAGA
TGAAGTTGGTAAGCCAAAATTTTCGAATGCACTACCGGTGAACAAAACAC
TGACAGGatgaatttcattaaattttctttctaaaGAATAACGTATGACT
TCACCACCTCTTCTCATACAAATATTCTGTAGGCTTACCAACTCTTGTCG
AATAGGAACGAAAAGATCAATGCGCAGCAGTATTTCCTTCAAGCTTTGTT
TAGATTCTCCGTATGCACAACAATGTCTTCTACCAAGACAAATGATAGGA
ATCTTTTTGAACCATTTCCGAGTGAAAAGAGCACATAATAAGTACATCGA
TAGATAGACTGTTATGGAAATACTGAAATACCATTTATCGTAAAGGCAAA
GTAGCAAATAGGATATCAGAAGCATCGTTTGTAGACCAAATAATACTgat
ggtccaaatttgaaaatgttactCGATCTGCCAACTTTCGGATTACTGTA
TAAGCAACAGAGTTTAAACAAGAAGAATGAAAGAATTCCTGGGCAACCCC
GTATAAAAATACTTAGAATATTAACAAGGGCTGATGCGATTATATACGTT
TGTAGGTTCATACTCTTTCGAACAGAATCGGTGTATCCAACGAAATTAAA
TTGTCCCTTTTCGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016772-exon-sc0000248-1491911889:265604..267488 | TCONS_00016772-exon-sc0000248-1491911889:265604..267488 | Clytia hemisphaerica | exon |
| TCONS_00016772-exon-sc0000248-1510915933:265604..267488 | TCONS_00016772-exon-sc0000248-1510915933:265604..267488 | Clytia hemisphaerica | exon |
| TCONS_00016772-exon-sc0000248-1575043694:265604..267488 | TCONS_00016772-exon-sc0000248-1575043694:265604..267488 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000248 | supercontig | sc0000248:265604..267488 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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