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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016763 ID=TCONS_00016763|Name=TCONS_00016763|organism=Clytia hemisphaerica|type=transcript|length=2584bp
tATATATCGTTATCTTCGTTGTAAAGAAAATGCTATAAAATTATAATGAT
TGGGTAGAAAATGAGAAGAGACAAAAATAATCATTACAACAGAAAATATG
ACAAATACACCGTTTAGCAGTGTCGAGTGCGCATGCatccaaacaatttt
ccattgttttgcaCTCTCCCCAGTAAAAAAGACGGTAGGTAAAAATCCGG
TTTTAATAaggaaacccagcagagaaacgGTAGGtgaagaactcctttta
atcataactttttttctctaaatgAACTTTTGTGGAATTTTCAGGAAAGA
TCCATTAAATTGtaattgatatcatgttcaaatacccttccacagtacta
aagcaCGCATTTTGACCTACCGCTTGCGGTGGAGCACCGTGGAGACAGCG
AGACTGCTAAATGGTGTATTTATCGCATCCTAAGTCATTTAACTCTGTTT
TTGTATATacttaattttcgcggtcgattTTTGATTGATAATCGTTCAAC
ATTATACGGTGTCAAGTCACCGACTTTCAAAAGTCGGCCATCAACGACAA
TGTTTTGTACGTTAGTTACATTCGTCGGTGATGAACTCTTCTTTAACGAC
AATTTCTCGGTTAGTTTCTTAAATATGTCGTTATTCGAGCTTTTATTTGA
GCTATTGTTGCTGCTCAGTCGATGAAGTTTCTTATGACCACTGCTGTTTC
TCCTTGAAGTTTCCTGATCGGCTGGTTGCTTGGATTTAGGTGATGGTAAG
GAATGtgttttattttgatctgaAGAGACATTGTTCTTATTAACAAGGTC
ATCATCAAAATCTTCAGGAGGTAGGAAAAATAAATCTTTATCAGCGGTAC
CAATTAATTTTCGGCGCCGGCAATTTATACGACGTTTTTGTGTTTTACTG
TCTTTAGATCCTGTTGATGAGACACTGCTTCGTTTAGATGTTGCAGTTGT
GTTTGATTCTGTGATTGATGATGTGCTACTGCTTGAAGATAGGCGtttta
aagaatcttttttgttttgtcttgTTAAAACGTTCGAAGAACGCATGATT
acagaatcttcattttcagtATTGAAAGATAGCTCTGAAGCTGAGTTCCT
TGATAGCTCTGAAGCTGAGCTTCTTAGGGAAGAGACTCCAGAATCACCGT
GATGTGGTGGTAAGAAGAGATCTAAATCTAGCTCTGATGTATGTTCACAT
TCATTATTATCTTCTTCGTTCGTTGTCGAGGTTGACTCACGAAGATAAGA
TGAAAACCTTTTATTGTCAACAACAAGTAACTCGTCTAACTTGACTTCTT
GAGTTTCGGATATCTTTGGTAAATTGTCTTGGTAACCAAATGGTAAATCT
TGTTTGACGAAATTTTGATTAAAGTCAATCACATGGTCAAAGTCAATATT
ATCAATGACATATTCAACAATTTGATCAGGATTTGTACCTGGTTCTTTCC
ATGGTTCGTCGCTAGATTCGCCACTGCTTTGGTCTTCAAGAACCACATCT
TCGATTTCTTCTTGATCTTGATACACCGGATCTATATAGTCGAAATCGTC
TTCCATCATATCTTGACTAACTTTACAAAATCCATCAAATCCGTATATGT
TATACATATTCTGAGGTGCATTTTCAGAATTGTTACTTATTTCTTCAATA
CAAAATTGATCAATATGATTTAGTAATGTATCAgtgatttgattattttc
attttcataatcaaaaagacaatgtgtcaaatcaaaatattccaTATCGA
CGGATTCTAATGTCCATTTGACTTGACAATAACTTGAATATTCTTcatag
cttatttcctcgtccGGGTTTTTCAGGCCACTGAGAACTTCTTCTCTAAA
ACCTTTATAAGCACCAGTAGGTATATTTGAAGCTTGTAAAGTCTTTGCGA
TTTTATCTTCTCGTCTATACATCGTACATAGTTCTTGTTGAATCTGGTTA
ATACGTTTTCGTTCGTCCAGTAATGCATTTTCGTTTTGTTGTTCAACTTC
TTGTTCGATTCTGAGTTGTGATTCCATTTGATCCAAGTCAAGAATATGTT
TCTCAATAACTCGTTGAAGTAATAAGTAATTATCTGTGAAGATTTCGATG
GAGATTTCTTGGGAATCTTGTGGTAAGGATGGGGAATCTGTTGAAGTTTG
GTTCACCATTTGGTAAAGTTTATTATAAATGTTTAGTATACGTTTGAATC
TGTTTTGTCGGCGAAGAATACCTTTTTGGAGATCACATATTGCTTTCAAT
CTTTCCACATTCAACAACAAGTATACTCCATTCAGCTCATCGATATACAT
TGCGGCGAGattgtttttcaaattcaaatcttAAACTAAGTctttttgta
aaacttttaCTCGTCAATAGTGCTAAAACAGAGAAAAATAGTTATTAATT
AATGAAAGTAAAACCGTTAAAGTATCCATCAGCAGTAAAACCACCTTATC
TTcttaaaactgattttgaatAAAGATAAGTGCAATTttgatgacaaaaa
tattacttTCATTTTCCAACCTCCCTACCCGCAGTTTTATCTTTTGGAAT
GTGACCATGAAAATTTTCCCTTCGATATGAAAAT Run BLAST on NCBI protein sequence of TCONS_00016763-protein >TCONS_00016763-protein ID=TCONS_00016763-protein|Name=TCONS_00016763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=621bp
MYIDELNGVYLLLNVERLKAICDLQKGILRRQNRFKRILNIYNKLYQMVN
QTSTDSPSLPQDSQEISIEIFTDNYLLLQRVIEKHILDLDQMESQLRIEQ
EVEQQNENALLDERKRINQIQQELCTMYRREDKIAKTLQASNIPTGAYKG
FREEVLSGLKNPDEEISYEEYSSYCQVKWTLESVDMEYFDLTHCLFDYEN
ENNQITDTLLNHIDQFCIEEISNNSENAPQNMYNIYGFDGFCKVSQDMME
DDFDYIDPVYQDQEEIEDVVLEDQSSGESSDEPWKEPGTNPDQIVEYVID
NIDFDHVIDFNQNFVKQDLPFGYQDNLPKISETQEVKLDELLVVDNKRFS
SYLRESTSTTNEEDNNECEHTSELDLDLFLPPHHGDSGVSSLRSSASELS
RNSASELSFNTENEDSVIMRSSNVLTRQNKKDSLKRLSSSSSTSSITESN
TTATSKRSSVSSTGSKDSKTQKRRINCRRRKLIGTADKDLFFLPPEDFDD
DLVNKNNVSSDQNKTHSLPSPKSKQPADQETSRRNSSGHKKLHRLSSNNS
SNKSSNNDIFKKLTEKLSLKKSSSPTNVTNVQNIVVDGRLLKVGDLTPYN
VERLSIKNRPRKLSIYKNRVK Run BLAST on NCBI transcript from alignment at sc0000248:77300..79883 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016763 ID=TCONS_00016763|Name=TCONS_00016763|organism=Clytia hemisphaerica|type=transcript|length=2584bp|location=Sequence derived from alignment at sc0000248:77300..79883 (Clytia hemisphaerica)
ATTTTCATATCGAAGGGAAAATTTTCATGGTCACATTCCAAAAGATAAAA
CTGCGGGTAGGGAGGTTGGAAAATGAaagtaatatttttgtcatcaaAAT
TGCACTTATCTTTattcaaaatcagttttaagAAGATAAGGTGGTTTTAC
TGCTGATGGATACTTTAACGGTTTTACTTTCATTAATTAATAACTATTTT
TCTCTGTTTTAGCACTATTGACGAGtaaaagttttacaaaaagACTTAGT
TTaagatttgaatttgaaaaacaatCTCGCCGCAATGTATATCGATGAGC
TGAATGGAGTATACTTGTTGTTGAATGTGGAAAGATTGAAAGCAATATGT
GATCTCCAAAAAGGTATTCTTCGCCGACAAAACAGATTCAAACGTATACT
AAACATTTATAATAAACTTTACCAAATGGTGAACCAAACTTCAACAGATT
CCCCATCCTTACCACAAGATTCCCAAGAAATCTCCATCGAAATCTTCACA
GATAATTACTTATTACTTCAACGAGTTATTGAGAAACATATTCTTGACTT
GGATCAAATGGAATCACAACTCAGAATCGAACAAGAAGTTGAACAACAAA
ACGAAAATGCATTACTGGACGAACGAAAACGTATTAACCAGATTCAACAA
GAACTATGTACGATGTATAGACGAGAAGATAAAATCGCAAAGACTTTACA
AGCTTCAAATATACCTACTGGTGCTTATAAAGGTTTTAGAGAAGAAGTTC
TCAGTGGCCTGAAAAACCCggacgaggaaataagctatgAAGAATATTCA
AGTTATTGTCAAGTCAAATGGACATTAGAATCCGTCGATAtggaatattt
tgatttgacacattgtctttttgattatgaaaatgaaaataatcaaatca
cTGATACATTACTAAATCATATTGATCAATTTTGTATTGAAGAAATAAGT
AACAATTCTGAAAATGCACCTCAGAATATGTATAACATATACGGATTTGA
TGGATTTTGTAAAGTTAGTCAAGATATGATGGAAGACGATTTCGACTATA
TAGATCCGGTGTATCAAGATCAAGAAGAAATCGAAGATGTGGTTCTTGAA
GACCAAAGCAGTGGCGAATCTAGCGACGAACCATGGAAAGAACCAGGTAC
AAATCCTGATCAAATTGTTGAATATGTCATTGATAATATTGACTTTGACC
ATGTGATTGACTTTAATCAAAATTTCGTCAAACAAGATTTACCATTTGGT
TACCAAGACAATTTACCAAAGATATCCGAAACTCAAGAAGTCAAGTTAGA
CGAGTTACTTGTTGTTGACAATAAAAGGTTTTCATCTTATCTTCGTGAGT
CAACCTCGACAACGAACGAAGAAGATAATAATGAATGTGAACATACATCA
GAGCTAGATTTAGATCTCTTCTTACCACCACATCACGGTGATTCTGGAGT
CTCTTCCCTAAGAAGCTCAGCTTCAGAGCTATCAAGGAACTCAGCTTCAG
AGCTATCTTTCAATactgaaaatgaagattctgtAATCATGCGTTCTTCG
AACGTTTTAAcaagacaaaacaaaaaagattctttaaaaCGCCTATCTTC
AAGCAGTAGCACATCATCAATCACAGAATCAAACACAACTGCAACATCTA
AACGAAGCAGTGTCTCATCAACAGGATCTAAAGACAGTAAAACACAAAAA
CGTCGTATAAATTGCCGGCGCCGAAAATTAATTGGTACCGCTGATAAAGA
TTTATTTTTCCTACCTCCTGAAGATTTTGATGATGACCTTGTTAATAAGA
ACAATGTCTCTtcagatcaaaataaaacaCATTCCTTACCATCACCTAAA
TCCAAGCAACCAGCCGATCAGGAAACTTCAAGGAGAAACAGCAGTGGTCA
TAAGAAACTTCATCGACTGAGCAGCAACAATAGCTCAAATAAAAGCTCGA
ATAACGACATATTTAAGAAACTAACCGAGAAATTGTCGTTAAAGAAGAGT
TCATCACCGACGAATGTAACTAACGTACAAAACATTGTCGTTGATGGCCG
ACTTTTGAAAGTCGGTGACTTGACACCGTATAATGTTGAACGATTATCAA
TCAAAaatcgaccgcgaaaattaagtATATACAAAAACAGAGTTAAATGA
CTTAGGATGCGATAAATACACCATTTAGCAGTCTCGCTGTCTCCACGGTG
CTCCACCGCAAGCGGTAGGTCAAAATGCGtgctttagtactgtggaaggg
tatttgaacatgatatcaattaCAATTTAATGGATCTTTCCTGAAAATTC
CACAAAAGTTcatttagagaaaaaaagttatgattaaaaggagttcttca
CCTACcgtttctctgctgggtttcctTATTAAAACCGGATTTTTACCTAC
CGTCTTTTTTACTGGGGAGAGtgcaaaacaatggaaaattgtttggatGC
ATGCGCACTCGACACTGCTAAACGGTGTATTTGTCATATTTTCTGTTGTA
ATGATTATTTTTGTCTCTTCTCATTTTCTACCCAATCATTATAATTTTAT
AGCATTTTCTTTACAACGAAGATAACGATATATa Coding sequence (CDS) from alignment at sc0000248:77300..79883 >TCONS_00016763 ID=TCONS_00016763|Name=TCONS_00016763|organism=Clytia hemisphaerica|type=CDS|length=1866bp|location=Sequence derived from alignment at sc0000248:77300..79883 (Clytia hemisphaerica)
ATGTATATCGATGAGCTGAATGGAGTATACTTGTTGTTGAATGTGGAAAG
ATTGAAAGCAATATGTGATCTCCAAAAAGGTATTCTTCGCCGACAAAACA
GATTCAAACGTATACTAAACATTTATAATAAACTTTACCAAATGGTGAAC
CAAACTTCAACAGATTCCCCATCCTTACCACAAGATTCCCAAGAAATCTC
CATCGAAATCTTCACAGATAATTACTTATTACTTCAACGAGTTATTGAGA
AACATATTCTTGACTTGGATCAAATGGAATCACAACTCAGAATCGAACAA
GAAGTTGAACAACAAAACGAAAATGCATTACTGGACGAACGAAAACGTAT
TAACCAGATTCAACAAGAACTATGTACGATGTATAGACGAGAAGATAAAA
TCGCAAAGACTTTACAAGCTTCAAATATACCTACTGGTGCTTATAAAGGT
TTTAGAGAAGAAGTTCTCAGTGGCCTGAAAAACCCggacgaggaaataag
ctatgAAGAATATTCAAGTTATTGTCAAGTCAAATGGACATTAGAATCCG
TCGATAtggaatattttgatttgacacattgtctttttgattatgaaaat
gaaaataatcaaatcacTGATACATTACTAAATCATATTGATCAATTTTG
TATTGAAGAAATAAGTAACAATTCTGAAAATGCACCTCAGAATATGTATA
ACATATACGGATTTGATGGATTTTGTAAAGTTAGTCAAGATATGATGGAA
GACGATTTCGACTATATAGATCCGGTGTATCAAGATCAAGAAGAAATCGA
AGATGTGGTTCTTGAAGACCAAAGCAGTGGCGAATCTAGCGACGAACCAT
GGAAAGAACCAGGTACAAATCCTGATCAAATTGTTGAATATGTCATTGAT
AATATTGACTTTGACCATGTGATTGACTTTAATCAAAATTTCGTCAAACA
AGATTTACCATTTGGTTACCAAGACAATTTACCAAAGATATCCGAAACTC
AAGAAGTCAAGTTAGACGAGTTACTTGTTGTTGACAATAAAAGGTTTTCA
TCTTATCTTCGTGAGTCAACCTCGACAACGAACGAAGAAGATAATAATGA
ATGTGAACATACATCAGAGCTAGATTTAGATCTCTTCTTACCACCACATC
ACGGTGATTCTGGAGTCTCTTCCCTAAGAAGCTCAGCTTCAGAGCTATCA
AGGAACTCAGCTTCAGAGCTATCTTTCAATactgaaaatgaagattctgt
AATCATGCGTTCTTCGAACGTTTTAAcaagacaaaacaaaaaagattctt
taaaaCGCCTATCTTCAAGCAGTAGCACATCATCAATCACAGAATCAAAC
ACAACTGCAACATCTAAACGAAGCAGTGTCTCATCAACAGGATCTAAAGA
CAGTAAAACACAAAAACGTCGTATAAATTGCCGGCGCCGAAAATTAATTG
GTACCGCTGATAAAGATTTATTTTTCCTACCTCCTGAAGATTTTGATGAT
GACCTTGTTAATAAGAACAATGTCTCTtcagatcaaaataaaacaCATTC
CTTACCATCACCTAAATCCAAGCAACCAGCCGATCAGGAAACTTCAAGGA
GAAACAGCAGTGGTCATAAGAAACTTCATCGACTGAGCAGCAACAATAGC
TCAAATAAAAGCTCGAATAACGACATATTTAAGAAACTAACCGAGAAATT
GTCGTTAAAGAAGAGTTCATCACCGACGAATGTAACTAACGTACAAAACA
TTGTCGTTGATGGCCGACTTTTGAAAGTCGGTGACTTGACACCGTATAAT
GTTGAACGATTATCAATCAAAaatcgaccgcgaaaattaagtATATACAA
AAACAGAGTTAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016763-exon-sc0000248-1491911889:77300..79883 | TCONS_00016763-exon-sc0000248-1491911889:77300..79883 | Clytia hemisphaerica | exon |
| TCONS_00016763-exon-sc0000248-1510915933:77300..79883 | TCONS_00016763-exon-sc0000248-1510915933:77300..79883 | Clytia hemisphaerica | exon |
| TCONS_00016763-exon-sc0000248-1575043694:77300..79883 | TCONS_00016763-exon-sc0000248-1575043694:77300..79883 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248 | supercontig | sc0000248:77300..79883 . |
Blast
The following BLAST results are available for this feature:
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