|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016761 ID=TCONS_00016761|Name=TCONS_00016761|organism=Clytia hemisphaerica|type=transcript|length=863bp
TAACTATCCTCCAAATGATGCTGGTGATTAAGTAATTGTTTACACTCCCC
TCCTTGAGATAATGCATCTCAACAGAATGCAATTTTGCTTCACAGAGCAA
CGCACAGTTCTTCAATATATGTACTTCACATTCAATAGTATGACATATTA
TGACAGTTATGTTTTCATGTAGTGTTCGTGTAACGTAGTTCTAATCAGTA
ACGTTTTCAGTTGTAATCAATACATTTCATTACGTGAGTTCAATGTAATG
TTCCGTGGAAGTAGGTTCGAATTTAATGAATACCAATACGTTGGTTATGt
cattcttttattttgtcGTAGAGTTGACAGTTGGAGAGTGTAGAGTTGAT
GGATCTTCTTTCTTCGTGCCCAGGAAGCACACAAGGTGTTTTCTTCGCAC
CCCAGAGGTACGCAAAGTGTTTTCTTCGTGCCCAGGAAACACACAAGGCG
TTTTCTTCGTGCCCAGGAAGCACACAAGGCGTTTTCTTCGTGCCCAGGAA
GCACACAAGGCGTTTTCTTCGTGCCCAGGAAGCATACAAGGCGTTTTCTT
CGTGCCCAGGAAGCACACAAGGTGTTTTCTTCGTGCCCAGGAAGCACACA
AGACGTTTTCTTCGTGCCCAGGAAGCACACAAGGCGTTTTCTTCGTGCCC
AGGAAGCACACAAGGTGTTTTCTTCGTGCCCAGGAAGCACACAAGACGTT
TTCTTCGTGCCCAGGAAGCACAAAAGTTGAAACAGGATTGGCAAATTGAT
ACACGTTGATGAACAATTGATCGTGTTGATGTAGATTATCTTCTTTTCTT
CGACATTTTGATGGTGAGCAGAGGAATTCCGATGCAGTTGATCTTCTTTC
TTCATGCCCAGGA Run BLAST on NCBI protein sequence of TCONS_00016761-protein >TCONS_00016761-protein ID=TCONS_00016761-protein|Name=TCONS_00016761-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
LGMKKEDQLHRNSSAHHQNVEEKKIIYINTINCSSTCINLPILFQLLCFL
GTKKTSCVLPGHEENTLCASWARRKRLVCFLGTKKTSCVLPGHEENTLCA
SWARRKRLVCFLGTKKTPCVLPGHEENALCASWARRKRLVCFLGTKKTLC
VPLGCEENTLCASWARRKKIHQLYTLQLSTLRQNKRMT Run BLAST on NCBI transcript from alignment at sc0000248:46012..46874 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016761 ID=TCONS_00016761|Name=TCONS_00016761|organism=Clytia hemisphaerica|type=transcript|length=863bp|location=Sequence derived from alignment at sc0000248:46012..46874 (Clytia hemisphaerica)
TCCTGGGCATGAAGAAAGAAGATCAACTGCATCGGAATTCCTCTGCTCAC
CATCAAAATGTCGAAGAAAAGAAGATAATCTACATCAACACGATCAATTG
TTCATCAACGTGTATCAATTTGCCAATCCTGTTTCAACTTTTGTGCTTCC
TGGGCACGAAGAAAACGTCTTGTGTGCTTCCTGGGCACGAAGAAAACACC
TTGTGTGCTTCCTGGGCACGAAGAAAACGCCTTGTGTGCTTCCTGGGCAC
GAAGAAAACGTCTTGTGTGCTTCCTGGGCACGAAGAAAACACCTTGTGTG
CTTCCTGGGCACGAAGAAAACGCCTTGTATGCTTCCTGGGCACGAAGAAA
ACGCCTTGTGTGCTTCCTGGGCACGAAGAAAACGCCTTGTGTGCTTCCTG
GGCACGAAGAAAACGCCTTGTGTGTTTCCTGGGCACGAAGAAAACACTTT
GCGTACCTCTGGGGTGCGAAGAAAACACCTTGTGTGCTTCCTGGGCACGA
AGAAAGAAGATCCATCAACTCTACACTCTCCAACTGTCAACTCTACgaca
aaataaaagaatgaCATAACCAACGTATTGGTATTCATTAAATTCGAACC
TACTTCCACGGAACATTACATTGAACTCACGTAATGAAATGTATTGATTA
CAACTGAAAACGTTACTGATTAGAACTACGTTACACGAACACTACATGAA
AACATAACTGTCATAATATGTCATACTATTGAATGTGAAGTACATATATT
GAAGAACTGTGCGTTGCTCTGTGAAGCAAAATTGCATTCTGTTGAGATGC
ATTATCTCAAGGAGGGGAGTGTAAACAATTACTTAATCACCAGCATCATT
TGGAGGATAGTTA Coding sequence (CDS) from alignment at sc0000248:46012..46874 >TCONS_00016761 ID=TCONS_00016761|Name=TCONS_00016761|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at sc0000248:46012..46874 (Clytia hemisphaerica)
CTGGGCATGAAGAAAGAAGATCAACTGCATCGGAATTCCTCTGCTCACCA
TCAAAATGTCGAAGAAAAGAAGATAATCTACATCAACACGATCAATTGTT
CATCAACGTGTATCAATTTGCCAATCCTGTTTCAACTTTTGTGCTTCCTG
GGCACGAAGAAAACGTCTTGTGTGCTTCCTGGGCACGAAGAAAACACCTT
GTGTGCTTCCTGGGCACGAAGAAAACGCCTTGTGTGCTTCCTGGGCACGA
AGAAAACGTCTTGTGTGCTTCCTGGGCACGAAGAAAACACCTTGTGTGCT
TCCTGGGCACGAAGAAAACGCCTTGTATGCTTCCTGGGCACGAAGAAAAC
GCCTTGTGTGCTTCCTGGGCACGAAGAAAACGCCTTGTGTGCTTCCTGGG
CACGAAGAAAACGCCTTGTGTGTTTCCTGGGCACGAAGAAAACACTTTGC
GTACCTCTGGGGTGCGAAGAAAACACCTTGTGTGCTTCCTGGGCACGAAG
AAAGAAGATCCATCAACTCTACACTCTCCAACTGTCAACTCTACgacaaa
ataaaagaatgaCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016761-exon-sc0000248-1491911889:46012..46874 | TCONS_00016761-exon-sc0000248-1491911889:46012..46874 | Clytia hemisphaerica | exon |
| TCONS_00016761-exon-sc0000248-1510915933:46012..46874 | TCONS_00016761-exon-sc0000248-1510915933:46012..46874 | Clytia hemisphaerica | exon |
| TCONS_00016761-exon-sc0000248-1575043694:46012..46874 | TCONS_00016761-exon-sc0000248-1575043694:46012..46874 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000248 | supercontig | sc0000248:46012..46874 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
| IPR017986 | WD40_repeat_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
|
