TCONS_00016755 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016755
Unique NameTCONS_00016755
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016755 ID=TCONS_00016755|Name=TCONS_00016755|organism=Clytia hemisphaerica|type=transcript|length=3671bp
attttgttaatattccCCAAAATGAGTTCATCGCATTGGTTAAATACTTA
GGATTATTCATTGAGACAGTTCCGCTTTCCAAACAGTGTATAATATCTAA
TATTTCTTTCAGTATAAATCAAGTGAGTGGTATCTAGGCTATAAATtgtt
ataaaatataaataaaatcatttaaaattaaTAATTACCTTCAGGAACCT
AATTTTGGGATAACTGCAGTTCTACAAAATTCCACAAAATTAGTTGTCAA
GAAAAAGGCTAATCGTGCTgctcgcaaaaattagttctcgctaaaaatta
gttctcgctcAAATTTAGTTCTCGCTCAAATTTAGTTCTCGCTCAAATta
gttcctttaaggtattcaaataaaacacttttttaaTTATTGGATTGAAA
TCGATTAAAATTATAAATTCTGTTTCATTTCCCTTCACTTAAACATAATA
TCACTGTTGGCAATGAAATTGAGTAAggatttaaaactttaaaaaatctt
tgacAAGCTAAATGCTATATAATCTGAATTtgtaattatttcttttaaat
atacATTCATAAATAAACTAAtatcgtattacttcgaataaacgcccggg
gcgtttatttaattttttcgattttaggaggggtgtttattcgagggagg
cgtttaaaaaaagggggcgtttattaaattattttagtctaaagtcgaat
atatagagcaaatataccctttgttttagttctttatcaggattttagta
caaaatttctttggttcaacgactaaaattgtatcgaaaactgctctggt
tacaagaattgactaaaatcttccttttcaaacccaatcaacactggtat
tgaaatttgaagggggcgtttatttaagggggcgtttattcaataatttt
ccttttcaggaggggcgtttattccaggggggcgtttaaaagaagggggc
gtttattcgaagtaatacggtatgttTCTTTAATAAATTAATTTACACTC
ATAAAACATGTAAATACTAATTTACTAAAAGTAATGGTGATATGCtgtaa
tttgaaaattattgagtGTAATAAAATCGCCTGttataatattatttatt
ttacatcgtgttttaacaaaaaaaaaacttgaatggTGCAAAGAATTTCA
AGCATTCAcaaatcaattttatcaaaCTCGTTGTAAatgaaaatcaaact
tttctaaTCAGATAAAACATTCTCAGACCAAATTTGGCAGTTTCACAAAC
TTCGGTGTCTCGTCCTCcaactttcacaaaattaaACCCTGTAAAAAGAT
GCACTCAAATTGCAGAGACGCTTGtagaaaaaattaacaaaatatgAACA
ACACAGTTTCCTCAAGCAATTACATAAACTGACTGTATATTCATAAAATA
TTTATTAAGTgtaattaaatttaaaatctaaGATCATCATGCAATTAACT
TATCCATATATGTAGTTTTAAAGAAATATCTTCATACTAATCCTCGAATG
AAGGATTAAGAACTTGGTATTCTCTTGGATTCAATCAAGGACTTGTTTAT
TTATCTTATATATTTTATTGCGAGGTTATTTTAAACAGGTGGTATCAATT
TGGCATTTTCACTTTCGCCATCCATAGGGGAATCATCATCagctgctttt
acgtcactgaAAGCTACCTGTGGGACTCTGGGCATTGACGGTGATTTCCT
TATTGTTTTGTTTGAAGAGTCTTGGTTGAAATCTGCAGGCAAGTTCAAAG
ACACAACACTTTTTTTTCCTCCCAAAGGCTCCTTGGTATTAGTATCAGAC
TTTTTAGAATGATCAATTTCATCATATCTGGTTGTTTTGAACCTGTTGAC
ATAGCTGTATTCCCTGGGTACTAATTCAATAGTGCTTACTGGCTCAACTT
GGAATCGAGAGCTGCCGGTGTTAAATCCAAGAACCTTTTTCATATGGTTC
AACCCACTGCCTGGTTTATTAACCAAACGATTAGTCACAGCTGTGTATTC
ATTATCCTGTTCGATTCCTTTGATTAGATAACTCAGCTCTTTTGCAACTT
TTTGACCCTTTGCACCCTGTATAGTTTCCTTGTTTTTGAGATCGATATTT
CGTAGTTTGCTGTAATCTTGAATTAAACTTTCCTCAATTGCATTCTCCCC
ACCTTCATGTTTATGTAACATTTGTCGTGTTTCCttcaaatcttttttcc
aaaaagaacTTGTGATGGCAGTTGCGGTCTTAGGAGCAACTTCTTTGATT
TTCAATACTACGACACCCAttatgaaaataacaacaatgTTTACAAGGGT
CAATGTTACACTGATTGCTCCTAAACGACCAAGATGGTCTGGAGAAAAAT
GTGTAATTTGTTGTGATGAAGATATAGGTGCAACATCTTTAGCACTATTG
ACAACAGCAAAGGCCCAAAACATACCAGCGTTGACAGCAGGAGGCAACAA
GGAGGCAGAAATAGCAACACCGATCAAAGACCCGAAATTTCCTTGAAGAA
AAGATAAAGCAACTGCTGCACCTGATGGTATTGCAACTAGCAAGCCAACC
AATAAACCCCTTGGCTCACCTCTGGATTGCATTTCAGTGGTAACATTTTC
GGAAATTCCAGTTAAATATGTCAACAAACCAATAAAAAAGCCAACAATCA
GACAGAGAGACAATCCAATCAACTCATTAAAAACTGCAGGTTTCCAGACT
TGCTTACTTTGTAACACCAAGCCAAACGTACCACCAAGGATAGGGCCCAT
GAGAGGTGAAACCAACATACTGGCTACCAGAAGAACAGAACTGTTTTCAA
GTAGCCCAATAGCTGCAATCATGCTTGCCAATATGAGCAACATGATGTAA
TCAAAAGTCATTTGTGATCCATTTTTGACTGATGTTACAACTTGTGCAAC
ATTCATTCTAGATTTGACGGTTTGACGAAATTGTTGCatatcatcaattt
ttttatcctcCTCTTTTTCCACAGCTGTGGGAAAATGAATATTGATTGGG
ATAATGCTGACAGATGAATATTCATTATTTCCAATTCCTGCATTTAAAAG
AGCATTCAAAAGAGCATCAATCTTATCTCCATCAAGTTCAAACAAGATTT
TCCAGCTATCGTTAATTGTATTCTTAATCCAAGTAGCATCAATTTTCAAC
TCCAGGTTCTTTATAATTGCCTCAAACCTGCGCTTATATTTATAGACAGA
TTTCTGCTTTTTCACCTTGGATGGTTTACTTTCTTCTTGAATGATTTCAA
CTTGAACTTCAGTTGAAGAGGTCACTTTACTGTCAGAGGATTTCTCATCA
GAAAGATCGCCATCAGGAGTGATTTTTTCCTCAGAGTCAGCATTATTTTG
GCTACCAGCAGATTGTTCAGTCACTTCACTATCTTCGTTTAATAATGGAG
CATCAGGAACCACAGCCGCATCCACTGGTGTGTCGGCTTCTTCTTTAATA
GGttcttcttcgtcttcttcAAATGGAAGTGTaacaataaacaaaacaga
cgATGACATGTTTTCTTTAGTTTATTTTACGCTTACCTGAAAAGAACAAa
taataattattcaatatattTCTCCATATATTCcttaaaaaacactaaaa
ttgttgcagatttcaataaacaaattttataagaaaaatgagactcagaa
aagccaaaaaataagaacaac
Run BLAST on NCBI

transcript from alignment at sc0000248:388823..392585-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016755 ID=TCONS_00016755|Name=TCONS_00016755|organism=Clytia hemisphaerica|type=transcript|length=3763bp|location=Sequence derived from alignment at sc0000248:388823..392585- (Clytia hemisphaerica)
ATTTTGTTAATATTCCCCAAAATGAGTTCATCGCATTGGTTAAATACTTA
GGATTATTCATTGAGACAGTTCCGCTTTCCAAACAGTGTATAATATCTAA
TATTTCTTTCAGTATAAATCAAGTGAGTGGTATCTAGGCTATAAATTGTT
ATAAAATATAAATAAAATCATTTAAAATTAATAATTACCTTCAGGAACCT
AATTTTGGGATAACTGCAGTTCTACAAAATTCCACAAAATTAGTTGTCAA
GAAAAAGGCTAATCGTGCTGCTCGCAAAAATTAGTTCTCGCTAAAAATTA
GTTCTCGCTCAAATTTAGTTCTCGCTCAAATTTAGTTCTCGCTCAAATTA
GTTCCTTTAAGGTATTCAAATAAAACACTTTTTTAATTATTGGATTGAAA
TCGATTAAAATTATAAATTCTGTTTCATTTCCCTTCACTTAAACATAATA
TCACTGTTGGCAATGAAATTGAGTAAGGATTTAAAACTTTAAAAAATCTT
TGACAAGCTAAATGCTATATAATCTGAATTTGTAATTATTTCTTTTAAAT
ATACATTCATAAATAAACTAATATCGTATTACTTCGAATAAACGCCCGGG
GCGTTTATTTAATTTTTTCGATTTTAGGAGGGGTGTTTATTCGAGGGAGG
CGTTTAAAAAAAGGGGGCGTTTATTAAATTATTTTAGTCTAAAGTCGAAT
ATATAGAGCAAATATACCCTTTGTTTTAGTTCTTTATCAGGATTTTAGTA
CAAAATTTCTTTGGTTCAACGACTAAAATTGTATCGAAAACTGCTCTGGT
TACAAGAATTGACTAAAATCTTCCTTTTCAAACCCAATCAACACTGGTAT
TGAAATTTGAAGGGGGCGTTTATTTAAGGGGGCGTTTATTCAATAATTTT
CCTTTTCAGGAGGGGCGTTTATTCCAGGGGGGCGTTTAAAAGAAGGGGGC
GTTTATTCGAAGTAATACGGTATGTTTCTTTAATAAATTAATTTACACTC
ATAAAACATGTAAATACTAATTTACTAAAAGTAATGGTGATATGCTGTAA
TTTGAAAATTATTGAGTGTAATAAAATCGCCTGTTATAATATTATTTATT
TTACATCGTGTTTTAACAAAAAAAAAACTTGAATGGTGCAAAGAATTTCA
AGCATTCACAAATCAATTTTATCAAACTCGTTGTAAATGAAAATCAAACT
TTTCTAATCAGATAAAACATTCTCAGACCAAATTTGGCAGTTTCACAAAC
TTCGGTGTCTCGTCCTCCAACTTTCACAAAATTAAACCCTGTAAAAAGAT
GCACTCAAATTGCAGAGACGCTTGTAGAAAAAATTAACAAAATATGAACA
ACACAGTTTCCTCAAGCAATTACATAAACTGACTGTATATTCATAAAATA
TTTATTAAGTGTAATTAAATTTAAAATCTAAGATCATCATGCAATTAACT
TATCCATATATGTAGTTTTAAAGAAATATCTTCATACTAATCCTCGAATG
AAGGATTAAGAACTTGGTATTCTCTTGGATTCAATCAAGGACTTGTTTAT
TTATCTTATATATTTTATTGCGAGGTTATTTTAAACAGGTGGTATCAATT
TGGCATTTTCACTTTCGCCATCCATAGGGGAATCATCATCAGCTGCTTTT
ACGTCACTGAAAGCTACCTGTGGGACTCTGGGCATTGACGGTGATTTCCT
TATTGTTTTGTTTGAAGAGTCTTGGTTGAAATCTGCAGGCAAGTTCAAAG
ACACAACACTTTTTTTTCCTCCCAAAGGCTCCTTGGTATTAGTATCAGAC
TTTTTAGAATGATCAATTTCATCATATCTGGTTGTTTTGAACCTGTTGAC
ATAGCTGTATTCCCTGGGTACTAATTCAATAGTGCTTACTGGCTCAACTT
GGAATCGAGAGCTGCCGGTGTTAAATCCAAGAACCTTTTTCATATGGTTC
AACCCACTGCCTGGTTTATTAACCAAACGATTAGTCACAGCTGTGTATTC
ATTATCCTGTTCGATTCCTTTGATTAGATAACTCAGCTCTTTTGCAACTT
TTTGACCCTTTGCACCCTGTATAGTTTCCTTGTTTTTGAGATCGATATTT
CGTAGTTTGCTGTAATCTTGAATTAAACTTTCCTCAATTGCATTCTCCCC
ACCTTCATGTTTATGTAACATTTGTCGTGTTTCCTTCAAATCTTTTTTCC
AAAAAGAACTTGTGATGGCAGTTGCGGTCTTAGGAGCAACTTCTTTGATT
TTCAATACTACGACACCCATTATGAAAATAACAACAATGTTTACAAGGGT
CAATGTTACACTGATTGCTCCTAAACGACCAAGATGGTCTGGAGAAAAAT
GTGTAATTTGTTGTGATGAAGATATAGGTGCAACATCTTTAGCACTATTG
ACAACAGCAAAGGCCCAAAACATACCAGCGTTGACAGCAGGAGGCAACAA
GGAGGCAGAAATAGCAACACCGATCAAAGACCCGAAATTTCCTTGAAGAA
AAGATAAAGCAACTGCTGCACCTGATGGTATTGCAACTAGCAAGCCAACC
AATAAACCCCTTGGCTCACCTCTGGATTGCATTTCAGTGGTAACATTTTC
GGAAATTCCAGTTAAATATGTCAACAAACCAATAAAAAAGCCAACAATCA
GACAGAGAGACAATCCAATCAACTCATNGTGGTAACATTTTCGGAAATTC
CAGTTAAATATGTCAACAAACCAATAAAAAAGCCAACAATCAGACAGAGA
GACAATCCAATCAACTCATTAAAAACTGCAGGTTTCCAGACTTGCTTACT
TTGTAACACCAAGCCAAACGTACCACCAAGGATAGGGCCCATGAGAGGTG
AAACCAACATACTGGCTACCAGAAGAACAGAACTGTTTTCAAGTAGCCCA
ATAGCTGCAATCATGCTTGCCAATATGAGCAACATGATGTAATCAAAAGT
CATTTGTGATCCATTTTTGACTGATGTTACAACTTGTGCAACATTCATTC
TAGATTTGACGGTTTGACGAAATTGTTGCATATCATCAATTTTTTTATCC
TCCTCTTTTTCCACAGCTGTGGGAAAATGAATATTGATTGGGATAATGCT
GACAGATGAATATTCATTATTTCCAATTCCTGCATTTAAAAGAGCATTCA
AAAGAGCATCAATCTTATCTCCATCAAGTTCAAACAAGATTTTCCAGCTA
TCGTTAATTGTATTCTTAATCCAAGTAGCATCAATTTTCAACTCCAGGTT
CTTTATAATTGCCTCAAACCTGCGCTTATATTTATAGACAGATTTCTGCT
TTTTCACCTTGGATGGTTTACTTTCTTCTTGAATGATTTCAACTTGAACT
TCAGTTGAAGAGGTCACTTTACTGTCAGAGGATTTCTCATCAGAAAGATC
GCCATCAGGAGTGATTTTTTCCTCAGAGTCAGCATTATTTTGGCTACCAG
CAGATTGTTCAGTCACTTCACTATCTTCGTTTAATAATGGAGCATCAGGA
ACCACAGCCGCATCCACTGGTGTGTCGGCTTCTTCTTTAATAGGTTCTTC
TTCGTCTTCTTCAAATGGAAGTGTAACAATAAACAAAACAGACGATGACA
TGTTTTCTTTAGTTTATTTTACGCTTACCTGAAAAGAACAAATAATAATT
ATTCAATATATTTCTCCATATATTCCTTAAAAAACACTAAAATTGTTGCA
GATTTCAATAAACAAATTTTATAAGAAAAATGAGACTCAGAAAAGCCAAA
AAATAAGAACAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009368XLOC_009368Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016755-exon-sc0000248-1575043694:389992..392585TCONS_00016755-exon-sc0000248-1575043694:389992..392585Clytia hemisphaericaexon
TCONS_00016755-exon-sc0000248-1575043694:388823..389899TCONS_00016755-exon-sc0000248-1575043694:388823..389899Clytia hemisphaericaexon
TCONS_00016755-exon-sc0000248-1510915933:389992..392585TCONS_00016755-exon-sc0000248-1510915933:389992..392585Clytia hemisphaericaexon
TCONS_00016755-exon-sc0000248-1510915933:388823..389899TCONS_00016755-exon-sc0000248-1510915933:388823..389899Clytia hemisphaericaexon
TCONS_00016755-exon-sc0000248-1491911889:389992..392585TCONS_00016755-exon-sc0000248-1491911889:389992..392585Clytia hemisphaericaexon
TCONS_00016755-exon-sc0000248-1491911889:388823..389899TCONS_00016755-exon-sc0000248-1491911889:388823..389899Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:388823..392585 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.03838	3.25406	5.62311	6.8122	16.7194	11.4996	9.34568	10.2328	5.92291	7.36847	7.64187	5.19093	5.94008	5.61409	5.72323	6.15849	8.14456	6.8214	5.14424	5.51293	6.4546	6.90135	7.41606	7.76852	4.70738	6.08222	1.91878	1.25862	6.3719	5.88235
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005240DUF389
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016755 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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