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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016752 ID=TCONS_00016752|Name=TCONS_00016752|organism=Clytia hemisphaerica|type=transcript|length=1554bpRun BLAST on NCBI transcript from alignment at sc0000248:323583..350600- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016752 ID=TCONS_00016752|Name=TCONS_00016752|organism=Clytia hemisphaerica|type=transcript|length=27018bp|location=Sequence derived from alignment at sc0000248:323583..350600- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00016752 vs. Swiss-Prot (Human)
Match: WDR5 (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1) HSP 1 Score: 576.63 bits (1485), Expect = 0.000e+0 Identity = 276/339 (81.42%), Postives = 305/339 (89.97%), Query Frame = 2
Query: 68 MTTQEKYINNNHQFSKPQGLPTNFHSIPNQRANIKTVKPNYSIKFTLSGHTKAISSVKFSPNGEWLATASADKLIKVWGAYDGKFEKTIAGHKLGISDVAWSADSNLIVSASDDKTLKVWSLVTGKCLKTLKGHTNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVDFNRDGALIVSSSYDGLCRIWDTASGQCLKTLIDDENPPVSYVRFSPNGKYILAATLDNTLKLWDFSKGKCLKTYTGHKNSLYCIFANFSVTGGKWIISGSEDNLVYIWNLQTKEIVQTLEGHSDVVLCCACHPTENIIASGALENDKTVKIWKSD 1084
M T+EK ++P + S P VKPNY++KFTL+GHTKA+SSVKFSPNGEWLA++SADKLIK+WGAYDGKFEKTI+GHKLGISDVAWS+DSNL+VSASDDKTLK+W + +GKCLKTLKGH+NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV FNRDG+LIVSSSYDGLCRIWDTASGQCLKTLIDD+NPPVS+V+FSPNGKYILAATLDNTLKLWD+SKGKCLKTYTGHKN YCIFANFSVTGGKWI+SGSEDNLVYIWNLQTKEIVQ L+GH+DVV+ ACHPTENIIAS ALENDKT+K+WKSD
Sbjct: 1 MATEEKKPETEAARAQPTPSSSATQSKPTP------VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333 The following BLAST results are available for this feature:
BLAST of TCONS_00016752 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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