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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016751 ID=TCONS_00016751|Name=TCONS_00016751|organism=Clytia hemisphaerica|type=transcript|length=1530bpRun BLAST on NCBI protein sequence of TCONS_00016751-protein >TCONS_00016751-protein ID=TCONS_00016751-protein|Name=TCONS_00016751-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp TKSKIKIKMTSQESTSFHGNQQIKSEGMPTSASQPTAPPPSSSSSRDMKIRun BLAST on NCBI transcript from alignment at sc0000248:323583..336495- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016751 ID=TCONS_00016751|Name=TCONS_00016751|organism=Clytia hemisphaerica|type=transcript|length=12913bp|location=Sequence derived from alignment at sc0000248:323583..336495- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000248:323583..336495- >TCONS_00016751 ID=TCONS_00016751|Name=TCONS_00016751|organism=Clytia hemisphaerica|type=CDS|length=11715bp|location=Sequence derived from alignment at sc0000248:323583..336495- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016751 vs. Swiss-Prot (Human)
Match: WDR5 (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1) HSP 1 Score: 572.778 bits (1475), Expect = 0.000e+0 Identity = 269/302 (89.07%), Postives = 293/302 (97.02%), Query Frame = 2
Query: 155 KPNYSIKFTLSGHTKAISSVKFSPNGEWLATASADKLIKIWGAHDGKFEKTIAGHKLGISDVAWSADSNLIVSASDDKTLKVWSLVTGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVDFNRDGALIVSSSYDGLCRIWDTASGQCLKTLIDDENPPVSYVRFSPNGKYILAATLDNTLKLWDFSKGKCLKTYTGHKNSLYCIFANFSVTGGKWIISGSEDNLVYIWNLQTKEIVQTLEGHSDVVLCCACHPTENIIASGALENDKTVKIWKSD 1060
KPNY++KFTL+GHTKA+SSVKFSPNGEWLA++SADKLIKIWGA+DGKFEKTI+GHKLGISDVAWS+DSNL+VSASDDKTLK+W + +GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV FNRDG+LIVSSSYDGLCRIWDTASGQCLKTLIDD+NPPVS+V+FSPNGKYILAATLDNTLKLWD+SKGKCLKTYTGHKN YCIFANFSVTGGKWI+SGSEDNLVYIWNLQTKEIVQ L+GH+DVV+ ACHPTENIIAS ALENDKT+K+WKSD
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333 The following BLAST results are available for this feature:
BLAST of TCONS_00016751 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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