TCONS_00016735 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016735
Unique NameTCONS_00016735
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016735 ID=TCONS_00016735|Name=TCONS_00016735|organism=Clytia hemisphaerica|type=transcript|length=280bp
tttttagaATACGGTGTGAATTGTATCCTCTTTCAACGAGGTTTATATCC
TATGGAATCGTTCGATCGCAAGATTGCTTACGATGTGCCCGTTTTCGTTT
CTACCAACACTGATTTGAATGATTATCTACACAAGTGCATCGAACAAATG
AAAGATTGGTTAGTAAAGAAGACGATTCAAAGGATTGTATTGGTGATCAC
TTCAGTTGCCAAGAAAGTGGACGTTGAACGTTGGACATTCAACATCGAAT
GTGATAAAACTGCTAATGAAAGCACGTAAG
Run BLAST on NCBI

transcript from alignment at sc0000248:395075..398043+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016735 ID=TCONS_00016735|Name=TCONS_00016735|organism=Clytia hemisphaerica|type=transcript|length=2969bp|location=Sequence derived from alignment at sc0000248:395075..398043+ (Clytia hemisphaerica)
tttttagaATACGGTGTGAATTGGTAAGACTTGTAATTTatccattttca
ttttattgagTCATTATACTTGGTAATTAGTAGTCATTTATCTGATGACT
TTGACCTTTCATGATCTCatcgagtctgctaaatcgcgtgccagcgtgcc
tacgTGCCATGCGTGCCTACGTGCCATGCGTGCCTGCGTGCCAAGCATGN
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NNNNNNNNNNNNNNNNNNNNNNtggcacgctggcacgccaagacagttga
cacgaaggcacgcatggcacgctggcacgcttAAAAACCGATGGCACgcg
tggcacgcgatttagcagactcgatCTCATCGCATCGCATCATGACTATA
AATTTCTTGCAAATAGACCTATTcaaaaattacgtcacgaacatcacttg
cctcgtatccaaacaattaccatggtgattatgtcccttgaggcatgatt
ttttttatgaatagaaagtagttttaagaaaacccgctgggagttaatca
ccatggcaatttttttatttcaaaacgaggcaagtgttgttcgtgacgta
atttatgaaaaggtctatacccAAACAAAATTGGTTGATTGTAGCGAAAT
TTATTGGTTGAATGTTTTTGCATATGAGATAATGTCGTATTTGTGGAAAT
CGAAGTATTTTGTAATGGCAGTGAATAAATTGTTCCTGTGTTAATCCCAA
TTTACTGACAGTAATCACAATATTACCAAACCTTTATATTGTTCAATAGT
ATCCTCTTTCAACGAGGTTTATATCCTATGGAATCGTTCGATCGCAAGAT
TGCTTACGATGTGCCCGTTTTCGTTTCTACCAACACTGATTTGAATGATT
ATCTACACAAGTGCATCGAACAAATGAAAGGTTTTTGGtactttcttatt
ttgatttcaattctttgacAGTTTTATTCTTAGAAAAATGAACTTCATGG
CCTTACCTGGAGATCTACTTTGTCTGGTAGCGGGATGGGAGGGACGGGAA
TAGAGATAATATGGTTTTGCTGCTTCATTAccaggaaaaaaaataaaaaa
aataggcGAGCTAAAAACGAGTGcgttttttttagctgaaaaaaaattgt
gaggTAAAAAAGGGAAGAGCGCTAAAATTTACGATCTGAAGAGCTTTaga
attttaagaaatatatatcccattttttttttttcattaccaGATTGGTT
AGTAAAGAAGACGATTCAAAGGATTGTATTGGTGATCACTTCAGTTGCCA
AGAAAGTGGACGTTGAACGTTGGACATTCAACATCGAATGTGATAAAACT
GCTAATGAAAGCACGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009357XLOC_009357Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016735-exon-sc0000248-1491911889:395075..395097TCONS_00016735-exon-sc0000248-1491911889:395075..395097Clytia hemisphaericaexon
TCONS_00016735-exon-sc0000248-1510915933:395075..395097TCONS_00016735-exon-sc0000248-1510915933:395075..395097Clytia hemisphaericaexon
TCONS_00016735-exon-sc0000248-1575043694:395075..395097TCONS_00016735-exon-sc0000248-1575043694:395075..395097Clytia hemisphaericaexon
TCONS_00016735-exon-sc0000248-1491911889:397474..397604TCONS_00016735-exon-sc0000248-1491911889:397474..397604Clytia hemisphaericaexon
TCONS_00016735-exon-sc0000248-1510915933:397474..397604TCONS_00016735-exon-sc0000248-1510915933:397474..397604Clytia hemisphaericaexon
TCONS_00016735-exon-sc0000248-1575043694:397474..397604TCONS_00016735-exon-sc0000248-1575043694:397474..397604Clytia hemisphaericaexon
TCONS_00016735-exon-sc0000248-1491911889:397918..398043TCONS_00016735-exon-sc0000248-1491911889:397918..398043Clytia hemisphaericaexon
TCONS_00016735-exon-sc0000248-1510915933:397918..398043TCONS_00016735-exon-sc0000248-1510915933:397918..398043Clytia hemisphaericaexon
TCONS_00016735-exon-sc0000248-1575043694:397918..398043TCONS_00016735-exon-sc0000248-1575043694:397918..398043Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:395075..398043 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.0027	16.9396	48.2174	51.3821	7.02323	2.74124	7.84249	7.87804	12.1866	10.3534	6.10073	5.47031	4.55324	6.01965	6.38757	6.84422	12.2907	10.5462	0	1.61787	5.52457	3.49529	8.95257	12.6143	10.133	20.2789	3.77747	4.22691	5.50224	8.02661
Blast
[Close]
BLAST of TCONS_00016735 vs. Swiss-Prot (Human)
Match: MD2L1 (Mitotic spindle assembly checkpoint protein MAD2A OS=Homo sapiens GN=MAD2L1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.108e-26
Identity = 41/92 (44.57%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    1 FLEYGVNCILFQRGLYPMESFDRKIAYDVPVFVSTNTDLNDYLHKCIEQMKDWLVKKTIQRIVLVITSVAKKVDVERWTFNIECDKTANEST 276
            F  +G+N IL+QRG+YP E+F R   Y + + V+T+ +L  YL+  +EQ+KDWL K ++Q++V+VI+++     +ERW F+IECDKTA + +
Sbjct:   23 FFSFGINSILYQRGIYPSETFTRVQKYGLTLLVTTDLELIKYLNNVVEQLKDWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDS 114
The following BLAST results are available for this feature:
BLAST of TCONS_00016735 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MD2L18.108e-2644.57Mitotic spindle assembly checkpoint protein MAD2A ... [more]
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