TCONS_00016730 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016730
Unique NameTCONS_00016730
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2554

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016730 ID=TCONS_00016730|Name=TCONS_00016730|organism=Clytia hemisphaerica|type=transcript|length=2554bp
GACGACTACAAGAAGATGCATCCGATTTTACACATTTCCAATTGAAACCA
ACATCTGATGCACAAGTTGGGTTTGCTTCTCCAGTCCTAGATGTCAGCAG
TCTTAGTGCATTAGAAGTTACTTTCGATTATGTCTTATTTGGTAGAGATG
TTGGCTCTATTTATGTTGTCATGGACGGGAAACTGGCAACCGATAGTACT
GATACCTTCAACCAAATCAAACCTATCAACGCAAACGCATTGAAAAACAC
TCCAACACGTCAAGAAGTCTTTTTTAAAGGTGGTAACACAAACATCAACA
CGTGGAattatgatttcaaaaatattttcgatgTCACCAATTTAGTAGAA
GCACagATTACAATCCAATTTTTGAGATTGAATGTAACAACAAGAAGTAT
CCGTGATGATTTGAGTATCATTACAATTGATACATTTCAAGTAGCAGCTT
CAACTGTCCTTCCCTCTACCACTGCTCCTCCAACAACGGTAGCTCCAACC
ACAGCTGTCCCTACCACTGCTGCCCCTACAACTGCTGCCCCCACCACGGC
TGCCCCTACAACTGCTGCCCCTACCACGGCTGCCCCAACTACAGCTGCCC
CTACCACAGCTGCCCCTACCACGGCTGCTCCTACCACTGCAGCCCCAACA
ACGGCTGCCCCTACAACTGCTGCCCCCACCACGACTGCCCCTACAACTGC
TGCCCCCACCACGGCTGCCCCTACAACTGCTGCCCCCACCACGGCTGCCC
CTACAACTGCTGCCCCTACCACTGCTGCTCCAACTACAGCTGCTCCTACC
ACTGCAGCCCCTACAACTGCCCCTCCAACAACAGCTCCTCCAACGACGGC
TGCTCCTACCACTACAGATGCCTCAGGTTGGGAATCTTGGAGCGAATGGA
GCGTTTGTAATGTTGAATGTGGACCTGGTAACCAAACCAGAAATAGAACT
TGTCAATCAGGTCAAACTTGTACAGGTCTCTCTGAAGAAACTCAACCTTG
CGTAGGGGCAAGTGTTCTTTGCAATGGACAATGGGGACCTTGGGGTACAT
TTTCCGCATGCTCTGGTACATGTGGTAACCGGACACGTGTATCAAAGCGG
GTATGCCCGAATAGTGGAGTGCCACCATGCGATGGTAGTGATACAAAGAT
TGAAGCTTGTGTTGAAGGAGAATGCTTCAAAGAATCATGCGACGgtTATG
ATGGTCAATACAGCTGCACATTCGATGAAAGTTATAATCAAAATCAAGAT
GGATTTTGCCAAAGTAACAATTTCGATGGATGGGCTTCTTATGGATTCAT
GGTACACTCAGGAAACACACCAAGTGCTGATACAGGCCCATCAAATGACC
atactttcaaaaaaaGTTGTGGTAGTTACATTTATTACGAATCCTCCCAA
CAATCGTACGGTGTTTTGGCCTCCGGTACCTTCATGAGTACCTCGGGACA
GATGTGTCTATCCTTTGCATTATCAATGTACAGCAAGATCAAAACAGACA
TGGGAGTTTTAAATATTGCCTTACTAAAAGAAGACCTTAGCTTTGTCAAA
ACATTGTGGACTCAAGATGGGGCGGTTTCGGACACGCCTGAAGATTGGCG
AATGTTATCCGTTCCCGTTGATGGATTAACACAAAACATGAAATACCGAA
TTGCTTTTGTTGCAACTCGAATGAACGAAAACAGTGATATTGCAATCGAT
GACTTCAAACTGATGGAAGGAAATTGCACTCAAGAAGTGGATGGACAATG
GGCATCATGGGGCCAATGGGGCCAGTGTGATAAAGAATGTGGTGAATCAG
TTCGAACAAGAATGAGATTCTGTACAGAGCCAGCACCCTCCGCCAATGGT
AAACAATGTCCAAATCAACTGACTGATTGGTATCAAAATGAAGACTGTCA
TCTGCCTGCTTGTAAAGttCATGGCGCTTGGACAAACTGGTTCGATTGGG
GAGAGTGCGACAAAAAGTGTGGTAACGGAACACGTATTCGTGTCCGTGAA
TGTGCAAATCCTGCACCAGTCAATGGTGGTGATCATTGTTTGGATCTCAG
TGATAATGCACGAAAATTGAGTGATACTGAAGATGAGCCNATGTTTGGAT
CTCAGTGATAATGTACGAAAATTGAGTGATACTGAAGATGAGCCATGTAA
TACACACCCATGCAAAAAGTGTTAAGATTTTGAATTGAAATACTGTACAC
TTTTTTATACATAATAAGTCTACTTTGTCAACTATGCTATTTTTTCCTAT
TTTAAAACATTGAATTACAACTGACATTATTCTCcttttaaaaaccttta
cttatttttataaatattgtTTGTAAAATCGTTGAGACGTAGAGATGCGT
ACTCTCCcgattctttttaataataaaccttttaacttgcaataaataaa
atacataTATTAAAAGTTAGCAAATCTTTTCCAAATAATGATggtacacg
tcttttttttttaaagaaactagttttaccaagcagcctcaatgtttctt
aagaaatcggccttttgagccttaaatgtttcttacatgtttctaaactt
tttg
Run BLAST on NCBI

transcript from alignment at sc0000248:279613..292813+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016730 ID=TCONS_00016730|Name=TCONS_00016730|organism=Clytia hemisphaerica|type=transcript|length=13201bp|location=Sequence derived from alignment at sc0000248:279613..292813+ (Clytia hemisphaerica)
GACGACTACAAGAAGATGCATCCGATTTTACACATTTCCAATTGAAACCA
ACATCTGATGCACAAGTTGGGTTTGCTTCTCCAGTCCTAGATGTCAGCAG
TCTTAGTGCATTAGAAGTTACTTTCGATTATGTCTTATTTGGTAGAGATG
TTGGCTCTATTTGTAAGTGCAATTATCTACATTTCGCCTCCCTTTTTTAC
ATTTCGCCtcccttttttatattttcgacTCTCTACTTTACAGactttcg
cgaacagaaacttATACGAGATTGAAAAATCTACGATATATTATtcactt
tcgcgaatttaaagaaaaatatttcttgaattgGATTGAAACTTTTGCTT
TCTGACTTATAAGGATttaacaggctaaaaagtgccatgaaacttacata
ttattttttaagttagaaGTTTCTATTTTATCAAGAATTTCTCGCGAGCA
TTAAGTTTCGAGAATAGCACTTtctagaattttcaaagacatttactttc
gcaaaagCCGCGAAGTTTCTTCTCGCTAAAGTTTGTACCCCTAAAGTAAT
TTTCTTTAATTACAACTCTAAGACTTGGAGAAACATGAAGTTATTTCTGC
CCTGCTAggaccaatgaagtaaaagcccAAAAGGCTAGAACCGAACCTTT
accctttctcaggcaagagtgACGCCTTAGAATATACGCCCTATTTTTAT
TAGCGGTTTCTCTGTTTTCGAGtggtatatttttgaaatctagcgggaaa
ttttacttttaatttgTATAAAAGTCACGCGCGTCTTTCAAAGCCGCAta
acttaggtaggatttagTGGCTTCAAATCATACCTTGGAGATACCCTTCT
AGCCTTTCGGATTAATACTTCATTTTCtgagaaattgataaaaattttca
ttcctATACTGTGGGAAAAATTCTCACCGCGCCTGTGAGACAAAGGTGTC
AAAGGAAACCAAGCACTCATATTAAATCCTTTCCTTTTAGATGTTGTCAT
GGACGGGAAACTGGCAACCGATAGTACTGATACCTTCAACCAAATCAAAC
CTATCAACGCAAACGCATTGAAAAACACTCCAACACGTCAAGAAGTCTTT
TTTAAAGGTGGTAACACAAACATCAACACGTGGAattatgatttcaaaaa
tattttcgatgTCACCAATTTAGTAGAAGCACaggtaaaaatattgcaaa
tatctCAATTCTATTTGTGTACTTATTTGTTTAGAAACTCTACATTTTAC
CTCTCTCTACAATGAGTTAGAATATGTAGTTTTATTATTaagattttttc
tataaaaCTCGAACCAAAACTAGCTAAAATCTATGCTAGGCTGTCCCAGG
GTCTTTTGATAGCAGACATGGCAACAGACAGACAGGTCAGATGACTGTAG
TTGAATTTGGGAGCCAAAAGTAGTCAATGGCCTCAAATAAAAAGTAATGG
AACACCTTATAATGTTTAACACAAGAAGGGTCAGGCATTATCATAGTCTT
TTTCAGcacaatttatttattattgtaTTTACAGATTACAATCCAATTTT
TGAGATTGAATGTAACAACAAGAAGTATCCGTGATGATTTGAGTATCATT
ACAATTGATACATTTCAAGTAGCAGCTTCAACTGTCCTTCCCTCTACCAC
TGCTCCTCCAACAACGGTAGCTCCAACCACAGCTGTCCCTACCACTGCTG
CCCCTACAACTGCTGCCCCCACCACGGCTGCCCCTACAACTGCTGCCCCT
ACCACGGCTGCCCCAACTACAGCTGCCCCTACCACAGCTGCCCCTACCAC
GGCTGCTCCTACCACTGCAGCCCCAACAACGGCTGCCCCTACAACTGCTG
CCCCCACCACGACTGCCCCTACAACTGCTGCCCCCACCACGGCTGCCCCT
ACAACTGCTGCCCCCACCACGGCTGCCCCTACAACTGCTGCCCCTACCAC
TGCTGCTCCAACTACAGCTGCTCCTACCACTGCAGCCCCTACAACTGCCC
CTCCAACAACAGCTCCTCCAACGACGGCTGCTCCTACCACTACAGATGGT
AAGTTCCAGTCtatttaaaaaagctttttcgTTAATTGAAGAAACGTTCT
TATTTTGGACAGACAGACAagcagacagacagacagacagagaGCGGCAG
CGCCATTTCTTATCCTCTCTTCCAAAATCTCTGGCCTCAGATATTTCATT
ATTCGAACAAACCGGAGGCTAATTGTTACAAAGGGATATTTTAGTTAGCT
ACTGGGATAGCAATCAATGACGCTTTTCAGTTTTTACaatggaaaaatat
tattttttcaaatttttggttaAGCCTATTAACCCCaagcttttttcatt
tttgtatcccaaggggggggggggggggaatctACCACCCTCTATTACTT
Ttcatctagaagagctatggccatgaaatttggcacagattttcttcatc
aagacacaaatttccaggaagaaaaaaaatttatgacgtcattcaaaaag
cAATGAcatcatcacaaaatttccacctgtcggtaaaaaagcccaaatat
atggtttacaaaaatgtctgtcacagtcgaaccaataaagatatttagat
tcaGTTTGAAGATTCTGATAAAAGGCTTTCCTTTAAttataattgccggt
tttgtattttctatgaagattttttatttttcaaattcacattgtcaatt
tttatcacgtgtcaaaatttgaaaatgattgaataaatagttgccaagtt
atcagcactttaaaatgtTGAGTTTATAGCGATTTTAGCTGAGTtatatg
tcatgtttcacaataatgtcataaaacctgatctggacgaCCTATAACCC
TAAAATTTCGCACAattactcttaataagattttataaaaatcagaaagt
ttcatGTCGATTATATACACgagatatacacaaaagaactccagtATGGT
AGATTCccggggggcagctgggcaaaaggaccgacgggtatgtgcgggtc
ctacgggtaccttttccaatatgtttaaaatgcactgtaagggtcggaaa
aactagagatgcactgtaagggtagaaatttcagaaaattcttgaaaaat
ctagatattttgaccaaaaatgctagaatttttgCAGTTCAGTTCCagtt
tttgcacgaaagggatcgaaaatttgggggaaaatgcactctaagggtat
gattttcactgatttttgctgcactgtaggggtgcaattttaaaagccaa
tttttggcccgcacataccgtcagtccgcaaacccagtgccccccggggg
tagattctacccccccgggctaatagggttaagactGTGATGATTTTTAT
CATGTTATCGATATCATGGGGTAGGGTTGTTGCAATAGAAATACGTTATG
ATAATGTGTTTATTATTGGaatagaaaagagaaaagaggtaAGTCGAACC
TAGCCCAATTGTCAGCTGCCAGGGGGCATAAAAAGAATGTGAGAGATTAT
ttgtatcaaaaacaaaacacacgGTATTTACCAAGCTGCTAAAATGGTCA
AGTTGATGCGAACCAGAAAATCTCAACAACTCCAGTTTCAATGAAGCAAG
GTCTCTATATTTCTCTGTCGACATTAATTTTCAATAGATATAGTTCCTTC
CAATCGATAGCCCGATCATATCACACCATGTGCGATGCTTGCAAAACTTT
TTCTTGACTTTGAATTTGTGTACCATCTACATTTATTGTTGACATACATA
AAAAGTCACTCACTAAAAATAAAGTctaaaagttttttaagaacAAGGTA
AAGAGAGAAAACAATGAAAGCAATGCTTGAGAGATATCACTCATAGcctt
atgaaaacttgagcaaagatctagaagatttgaaaaatgttgaaagaGGC
TTCAAAGCAAAATTCACCACAGAataaaaatatgcttttcaaagaaaatg
ttaagaaagtATGATAAGCAACCTCGAtggcttcgaccgccatcttgaaa
aCTCTTGGTGTCTATGGAGCGCAGAAGtcgaaaatatagcttttatagcc
agtatcaaACTTTGGCCGGCTTCTTGCTTCTCCGGCAACATTAAGAAGTG
TGATACTGATTTTACGCAACGTTTCTAAAAAAACGGGCAGACTGACTGAC
ACACAAAAGGAAGGAAGGACAGAAACACAAATGAAAACCCTATCGCTAGC
GTTGGGCCAATTATTGCTTTGACGTACACAAAAATAGAAACAATTTATTG
CCATTCGAAGACAATATTGTAAGCTTGAACCCAATCTCTATGTCGATCTA
TTGATTTGATTGGCCAATGGTTTACAAACTAAAGCCTATTCGCTTTGAGT
TTGTATGTATTCTTTTTTGCTAACGTGTGGGAACCTCTCTTATCGTGATA
ACACTGGTATGGTTTCCACGTGATATCAAAGAAGAgcgtatacacgtttt
tttataagaacataaggctttcatggcaaaaatgttagagtaagttaaga
acattttaaggctttgtagactccAAAATACCTAACGCCTAATTTCTTAA
GGAaagggacaaaaatactcatggcaaaaataagaacatgctaataacac
ttttaggcttaaaactcaaaaagttacgaacatccgaaggtttcaaaaat
tttgaatgttataataaaaataaaatgtactCAAATTGAATGTACTTTAT
ATAATCATTATCTTCTTTCAGCCTCAGGTTGGGAATCTTGGAGCGAATGG
AGCGTTTGTAATGTTGAATGTGGACCTGGTAACCAAACCAGAAATAGAAC
TTGTCAATCAGGTCAAACTTGTACAGGTCTCTCTGAAGAAACTCAACCTT
GCGTAGGGGCAAGTGTTCTTTGCAGTAAGTCAAATCTTGGATTCCAACAT
TAAGTTAAACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
gaaaatgtataacatgccatagttttgttggttacatcagtcagaaaaca
cattttaaacacggcaattatgaaaaattcactatggtcagagcccttaa
cgtGTGGGAAACTCTCTTATCGTGATAACACTGGTATGGTTTCCACGTGA
TATCAAAGAAGAgcgcatacacgtttttttataagaacaaactatttaag
aacataaggcttcaatggccaaaatgttagagtaagttaagaacatttta
aggctttgtagactccAAAACACCTAACGCCTAATTTCTTAAGGAaaggg
acaaaaatactcatggcaaaaataagaacatgctaataACACTTTTaggc
gaggggtaaatcacttgaaaaaaggtgtacgatactttttgactttttga
cttttttttgacttttttcaaactttcattttgacttttttccgacaaaa
acgcccaccgccttcgGGCGCCCAACATCTTCCGcccaaatctgtccaaa
aacgccaaccgcccataaattttgctccacccatccgcccattcaagaaa
cttttttgactttttcaagactttttttggacttttatttgactttttga
cttttttctaagaatttttgactttttctttgactttttgactttttctt
tgactttttgactttttttttgacttttttgactttttttttgacttttt
gtagaggtgtacgataatttttcgagtgatttacccctcccttttaggct
taaaactcaaaaagttacgaacatccgaagatttcaaaaattttgaatgt
tataaaaaaaattaaatgtacTCAAAGTGAATGTACTTTATATAATTATT
ATCTTCTTTCAGCTTCAGGTTGGGAGCCTTGGAGCGAATGGAGCGTTTGT
AATGTTGAATGTGGACCTGGTAACCAAACAAGAAATAGAACTTGTCAATC
AGGTCAAACTTGTACAGGTCTCTCTGAAGAAACTCAACCTTGCGTAGGAG
CAAGTGTTCTTTGCAGTAAGTCAAATCTTGGATTCCAACATTAAGTTAAA
CTCTGGGCcggcgaatcaattttgaaagtggaggggccaaatagtaagtg
tctaaggaggcgtcaccatggttggcgccgacgggcctttcttagcaaaa
aagtgcccccccccccagtttcGCCGGTCCTGAAACTTAATAACTACTTT
GCCCTGTCTAAAATTTTCATCATAATTTTcgtaataacaataataatttg
TTACTTTTATCAAACTTTGTTTAAAACACTCACTTTTTGTCTCtctaaat
tcacttttttatacGAATTTAGTCTCTCAAAAATTTGTTAGTCAGCTTCG
CACATACATATTAGGGGTAAAACAATGACTTAAACAACTCACGAAAGACC
TCAAAAAACCATTAGAAAAATGATTAGAAATCTAAATTTGACAGTGCATT
CTTGCCGTCAAGTATTATAGACAGTCGTTATTTTCGAAATTGTCTGTAAC
TTTAAGGCTCATGACTATAGATGAAATAACTAATAACTAAATAAAGTGAT
GTTCTTTCTTGTTcatgttttgaatttcaagcctaacaagattttttact
ttttgtatTGAAAATATCGGCTGGTAAAGGATTCTGGTTTACACTCCTTT
AAAGcaaattaccttatcggccctttttaaaCCGGCCCTTATTGTCGTTC
GAGCTCgtggtgtaaaaagggccgataaggtaataagTTTATAGGTTAAA
GGGGAGTTAAACAGGTACAATCAGACAAGTAAATCGTCTACTTTGTGCAT
CGTTGCTTTTCAGATGGACAATGGGGACCTTGGGGTACATTTTCCGCATG
CTCTGGTACATGTGGTAACCGGACACGTGTATCAAAGCGGGTATGCCCGA
ATAGTGGAGTGCCACCATGCGATGGTAGTGATACAAAGATTGAAGCTTGT
GTTGAAGGAGAATGCTTCAAAGAATCATGCGACGGTAGGAGTTTGTTTAT
TGAAGGTCTATCGTGTTTATTTGAAAAGGAACTTTaatgaatttttatga
aatttttatttctacCGGGtggggtgcgccacaaaaaagtttctctcttt
aaagtgaattttctcgaagtctaaaaatttaaaaataaccaatccttttt
cattggaaagaagaaagataaagtgttcaaaaacgttgaaaatcgaccta
tcgtCGTTAATTCTATATTAACGAGCTCAGTATTCCCCAAGTTTGAGTgt
ggaaattcttttttcagattGAAATGACTCATTGAACCAAATATTATTTT
TCGGGTATTTCTACAATTTGAACGATTTTCTCACTAATAATATTCTTATA
TAATGTGATGTGATATCAgcggttaaaggttttgtttttacataagcgtt
cccgtttcatatcagacacatattttatatcaagacagtgtctacctatt
gttatactatgctgatataagcaaaaaaatgcttttcttttcctctttct
gagcAATCTTGCTTCACacccgtgtcaatccaatgtgaaaaagcttgtga
attaaaattgatgagtaagcaaacgatatcactcttatttaaaaacaaaa
cctttaatgtgACTCGTTTCATTATGACCCGTAAAGAAATGCAAAGCAAG
TTGAAAAAACCTTTACTTTTCGTATGGTTagaaaacaaagacaatagGCC
AGACATAGACGCTCTAATCAATTTGGATATTTCCAAAGACTGTATTTACC
CAAACTCGTGTCCAGCCCCCTAGTGTACATTTGACACCTATGGTTATGAC
AGTGTTTATGAAAAGTGTACCTCGTCCAtctgtaaaattaaaaaatgttt
caagtgtCTTTGAGGTAGGGTAAGAACTTtcacttttaacttttaacttt
tttaggtTATGATGGTCAATACAGCTGCACATTCGATGAAAGTTATAATC
AAAATCAAGATGGATTTTGCCAAAGTAACAATTTCGATGGATGGGCTTCT
TATGGATTCATGGTACACTCAGGAAACACACCAAGTGCTGATACAGGCCC
ATCAAATGACCatactttcaaaaaaagttagttttaaTCATGATTAAATC
CTTGAACCTAGCTTAATCATTGATTTTTGTAACAGATCTAGTTGTATTCT
ATCCGCAGACACGCGTTTCGTCCATCCTAGGACTCGTCAGTGAAGCTCAG
ACCAGAGTGCTCTAAATACTAAGTGTTGCATGATCGCTTTCGGTGAGCAG
AGTAGCAAAGCTTAATCCGGACAAGCagcagttgaccccctggacaaccc
aaattacccccggacagagcaaatttaccccccgaacaaggcaaattttg
atgatttttcgctaccccccggacaatatataaggttaatgtttttcttg
aaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtttgatgatttttcgctaccccccc
cccaacaatatatcctccatcctcctcattttctggaagagcaaATTGCT
TATGGTCATGACAATAATATTCTCTATTTGAATAATCGTTAAATTTCGAT
GCTCGGGGCgataaaatttttcattttaaactttaaatatTATTCCAGGT
TGTGGTAGTTACATTTATTACGAATCCTCCCAACAATCGTACGGTGTTTT
GGCCTCCGGTACCTTCATGAGTACCTCGGGACAGATGTGTCTATCCTTTG
CATTATCAATGTACAGCAAGATCAAAACAGACATGGGAGTTTTAAATATT
GCCTTACTAAAAGAAGACCTTAGCTTTGTCAAAACATTGTGGACTCAAGA
TGGGGCGGTTTCGGACACGCCTGAAGATTGGCGAATGTTATCCGTTCCCG
TTGATGGATTAACACAAAACATGAAATACCGAGTAAGTAGAGAAATAGTA
TCCCATTTTCGTAGATGTCATTATCAAGGGCTTACCATATTAATAATAAT
AGGGTAATATGGTGATAATTAGAGCGTTGAATATCGAAACGCGAAGTGTC
ATTCGCATCCCCTGTGGCACAATACATATAGATACAATGGCGCTGTTCCT
GAATGTACTCTCATTGGACTGGATAGCTCAGTCGGCAGAGCAATTGAAAT
AGTAATACTAAGTTCGAATCTCACTTCGGCCCTCAGTTTAGAAATTCGCT
AAAAAACTGAGGTCAATGCGCAGATGTATTGGCAAAATACctcaaaatca
atttatttaTTAGGCTTTGCAATAAAGAGACTTTAAAGTCTAACTCTAGA
AAACGTTccaatttataaaaaaactctGGGTTTGACAATCTACTATTGTA
TCATTGTCATGAAATTATATTGAATAGTGCTCGATGATAAACAAACAAGA
TACCAGAgccaagcaaaatttaaaagttttctttcaataaaagtacATAA
CTTAAAGTTTCGTGCTTCTGCACTTGTTCAAATGTACAAGAGATGTGGTT
GTGAAAAAAATCTGCgtgtaaaagtcaaaaaatgtttagaaaaatgAGAT
AATTGGATAATTAAAAACTGTTTAGACAAGGGGTTACAATCtattattgt
aaaatattttgctgtttctcatttAACTACTATTGGcgttgaaaaaaata
tatagatACCACTTTAATTATTCTATGGatggatttaaaaaattaatcaa
actaGGATTATTATCTATATCTTCAATTACATGTGACtccctctctctaa
ttcgatttttaaggagaCATAGGATTCGAATAGCAGAGAGTGGCATCGTT
GACGTTTGGACTATATAGATGAACCGTATTAGTAAACAGAGAAGgattaa
aggccggtctccacttgcacgcactgcaatcgcactttttcgaacaaagc
ttccacgctattggtcaaaagaaaaatgaagcaactccattggcgcgatc
tgacgtaacggttgaaaaaagttgaaatgtgttcaacttctttttcaagc
gcgctacatttttatgacgtaatcttttttccaagcaaaaaggattgaag
ccaaaaggtgcaaTCGCAAcgtgcgcaagtggagaccggcctttagtaAA
CAGAGAAGAACTAAAAACCACCTTACCTTTAGATTGCTTTTGTTGCAACT
CGAATGAACGAAAACAGTGATATTGCAATCGATGACTTCAAACTGATGGA
AGGAAATTGCACTCAAGAAGGTACGAGTTTCCagctgaaaaaaatattga
aaataaataagtACCGTAATTGTCCCCATTAAATACCCTGggcctttttt
tctcaaagtaGGGCGTTTATTATAGAGGAGGCGTTTATACGAAGCAATAC
ATATGGTATTTGAATAaacaaaagtaaattttatgCTCACTAAATGGTAA
CAGTattactacaatcatggtcaaaatctattgagaatttacctttttcc
tcgtttttcgaaattagGAGTTCgtgcgagaaagtcgattttttctgagc
cttattggaccatttttgagcttttggatcctcagatatATACTACAAAG
TCTTATATATCTAgcattaaaactctaccctaacttagagcacttccaaa
tcgtttgtggttttaAAGATTCGtggggatttcccttttttctataATAT
TACGAACATGATTGTAGTGGGGATACATATTTCGAAGTGCAACGCAGGGA
CCTCCATGATTAACTCAGCTAGAGGAGGAATAATGTTAGTATAAGGTGGT
AATGAGTGCTACAATTTAATTAACGCAAAAGGcaggattttcgaaaataa
cTTTAGCTCATAGTTTGTTAAAAGATTGTAATTAACGTGAGGATAACCGA
TTCGCGTTAATAACTTAAATTAGTCAATTGCATTCTTTTACATTGTATTT
CAGTGGATGGACAATGGGCATCATGGGGCCAATGGGGCCAGTGTGATAAA
GAATGTGGTGAATCAGTTCGAACAAGAATGAGATTCTGTACAGAGCCAGC
ACCCTCCGCCAATGGTAAACAATGTCCAAATCAACTGACTGATTGGTATC
AAAATGAAGACTGTCATCTGCCTGCTTGTAAAGGTTAGTCAATTCCTGat
atatgcaccactgcaatgacttcacgaaattatgcaggTTTTCTGTTTTT
ATTCCACCCAAtgcgtcactttttctattgtttaagtgacgtaagtggaa
aatttcaaaagttctcagaagacccTCCAGTGgcgtgcatatcatgaata
cactGCACTGGTTTCGAGATacagtctccttaactcgaacctctataact
cgaatgtttccTTTACTTGAACAAGCTTTCTATTCCTTCGGTAGAATGCC
TTTTATGAACCTTACTCAATAACTCGAAATGTCcttaatttgaataattt
tgtgTTCTCCATGCGTGCTGAGTTATGGAGGCTCccctgcaaattttttt
tgattccaTGATGATAGCATGAAAGAAGAAATTAAGTAAACGAGCTCCCT
NTCCTGCAGATTTTTTTGATTCCATGTGATTAGCATGAAAGAAGAAATTA
AGTAAACGAGCTCCCTGTTTGAATAGTATGACAAAATGTACAATTTTCAA
CCAACTAGATTttgtttattcaaaatttttgtttaccaTAGCATACATTA
TGAACATAAAAATTACCTGCCCAttttccccgggggggggggggNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccg
tcagtccgcaaacccagtgcccccccccgggccattttcattaaaaacta
ttTCTGAACAATATTGATGATCATGTTATGAAAATTCCCAACAcaaatca
actttttcttttagttCATGGCGCTTGGACAAACTGGTTCGATTGGGGAG
AGTGCGACAAAAAGTGTGGTAACGGAACACGTATTCGTGTCCGTGAATGT
GCAAATCCTGCACCAGTCAATGGTGGTGATCATTGTTTGGATCTCAGTGA
TAATGCACGAAAATTGAGTGATACTGAAGATGAGCCNATGTTTGGATCTC
AGTGATAATGTACGAAAATTGAGTGATACTGAAGATGAGCCATGTAATAC
ACACCCATGCAAAAAGTGTTAAGATTTTGAATTGAAATACTGTACACTTT
TTTATACATAATAAGTCTACTTTGTCAACTATGCTATTTTTTCCTATTTT
AAAACATTGAATTACAACTGACATTATTCTCcttttaaaaacctttactt
atttttataaatattgtTTGTAAAATCGTTGAGACGTAGAGATGCGTACT
CTCCcgattctttttaataataaaccttttaacttgcaataaataaaata
cataTATTAAAAGTTAGCAAATCTTTTCCAAATAATGATggtacacgtct
tttttttttaaagaaactagttttaccaagcagcctcaatgtttcttaag
aaatcggccttttgagccttaaatgtttcttacatgtttctaaacttttt
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009353XLOC_009353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016730-exon-sc0000248-1491911889:279613..279774TCONS_00016730-exon-sc0000248-1491911889:279613..279774Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1510915933:279613..279774TCONS_00016730-exon-sc0000248-1510915933:279613..279774Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1575043694:279613..279774TCONS_00016730-exon-sc0000248-1575043694:279613..279774Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1491911889:280603..280796TCONS_00016730-exon-sc0000248-1491911889:280603..280796Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1510915933:280603..280796TCONS_00016730-exon-sc0000248-1510915933:280603..280796Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1575043694:280603..280796TCONS_00016730-exon-sc0000248-1575043694:280603..280796Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1491911889:281147..281660TCONS_00016730-exon-sc0000248-1491911889:281147..281660Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1510915933:281147..281660TCONS_00016730-exon-sc0000248-1510915933:281147..281660Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1575043694:281147..281660TCONS_00016730-exon-sc0000248-1575043694:281147..281660Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1491911889:284334..284486TCONS_00016730-exon-sc0000248-1491911889:284334..284486Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1510915933:284334..284486TCONS_00016730-exon-sc0000248-1510915933:284334..284486Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1575043694:284334..284486TCONS_00016730-exon-sc0000248-1575043694:284334..284486Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1491911889:286476..286646TCONS_00016730-exon-sc0000248-1491911889:286476..286646Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1510915933:286476..286646TCONS_00016730-exon-sc0000248-1510915933:286476..286646Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1575043694:286476..286646TCONS_00016730-exon-sc0000248-1575043694:286476..286646Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1491911889:287568..287738TCONS_00016730-exon-sc0000248-1491911889:287568..287738Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1510915933:287568..287738TCONS_00016730-exon-sc0000248-1510915933:287568..287738Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1575043694:287568..287738TCONS_00016730-exon-sc0000248-1575043694:287568..287738Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1491911889:288311..288594TCONS_00016730-exon-sc0000248-1491911889:288311..288594Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1510915933:288311..288594TCONS_00016730-exon-sc0000248-1510915933:288311..288594Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1575043694:288311..288594TCONS_00016730-exon-sc0000248-1575043694:288311..288594Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1491911889:289795..289882TCONS_00016730-exon-sc0000248-1491911889:289795..289882Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1510915933:289795..289882TCONS_00016730-exon-sc0000248-1510915933:289795..289882Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1575043694:289795..289882TCONS_00016730-exon-sc0000248-1575043694:289795..289882Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1491911889:290566..290745TCONS_00016730-exon-sc0000248-1491911889:290566..290745Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1510915933:290566..290745TCONS_00016730-exon-sc0000248-1510915933:290566..290745Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1575043694:290566..290745TCONS_00016730-exon-sc0000248-1575043694:290566..290745Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1491911889:292177..292813TCONS_00016730-exon-sc0000248-1491911889:292177..292813Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1510915933:292177..292813TCONS_00016730-exon-sc0000248-1510915933:292177..292813Clytia hemisphaericaexon
TCONS_00016730-exon-sc0000248-1575043694:292177..292813TCONS_00016730-exon-sc0000248-1575043694:292177..292813Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:279613..292813 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0128318	0.00768733	0.00990601	0.0179581	0.0216938	0.00703494	0.273318	0.417539	0.0210551	0.080669	0.0556116	0.00507714	43.7891	62.0912	0.0229411	0.0203189	0.0399739	0.0266784	91.1733	160.639	0.0415067	0.0291401	0.017552	0.00727152	0.0610358	0.374657	0.378084	0.247506	0.00245385	0.0126113
Blast
[Close]
BLAST of TCONS_00016730 vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 6.457e-20
Identity = 43/116 (37.07%), Postives = 58/116 (50.00%), Query Frame = 3 
Query: 1701 DFKLMEGNCTQEVDGQWASWGQWGQCDKECGESVRTRMRFCTEPAPSANGKQCPNQLTDWYQNEDCHLPACKVHGAWTNWFDWGECDKKCGNGTRIRVRECANPAPVNGGDHCLDL 2048
            DF          V+G W++W  W QC ++C   +R R R C  P P   G  C   L    + ++C++  C V G W+ W  W +C   CG G  +R R C+NPAP  GGD CL L
Sbjct:  771 DFLRAGRYSAHTVNGAWSAWTSWSQCSRDCSRGIRNRKRVCNNPEPKYGGMPC---LGPSLEYQECNILPCPVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLGL 883
The following BLAST results are available for this feature:
BLAST of TCONS_00016730 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEM5A6.457e-2037.07Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3[more]
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